BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483645
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45120.1 | Symbols: | C2H2-like zinc finger protein | chr2:... 1256 0.0
AT3G60580.1 | Symbols: | C2H2-like zinc finger protein | chr3:... 62.1 1e-08
> AT2G45120.1 | Symbols: | C2H2-like zinc finger protein | chr2:18603618-18604751
FORWARD LENGTH=1134
Length=1134
Score = 1256 bits (680), Expect = 0.0
Identities = 939/1051 (89%), Gaps = 69/1051 (7%)
Strand=Plus/Plus
Query 1 GTttctctactctttgttcttctctctctatctctgttctGTAA--------AT-TT--- 48
||||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 1 GTTTCTCTACTCTTTCTTCTTCTCTCTCTATCTCTGTTCTGTAATTTTTGTCGTGTTGAA 60
Query 49 --ATGGAGAGATACAAGTGTAGATTTTGCTTCAAGAGCTTCATCAATGGAAGAGCTTTAG 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATGGAGAGATACAAGTGTAGATTTTGCTTCAAGAGCTTCATCAATGGAAGAGCTTTAG 120
Query 107 GTGGTCACATGAAATCTCACATGCTTAGTCTTTCTGCAAAACGT-GAACTTTA-TGAA-T 163
|||||||||||| |||||||||||||| |||||||||| ||||| | | || | || |
Sbjct 121 GTGGTCACATGAGATCTCACATGCTTACTCTTTCTGCAGAACGTTG---TGTAAT-AACT 176
Query 164 --T-AA-CTGGTGAAGAAGCAGAGGAACGCCCGAGTCAACTCAGTGACGACGACGA---T 216
| || | | ||||||| ||||||||| |||||||||||| ||||||||||||| |
Sbjct 177 GGTGAAGCAGAAGAAGAAGTAGAGGAACGGCCGAGTCAACTCTGTGACGACGACGACGAT 236
Query 217 ACAGAGTCAGATGCTTCTTCTTCTGGTGAGGAACAAGATCATTTGAATTGTGGTGAGTTT 276
|| ||||| ||||||||||||||| | | | | ||| |||||
Sbjct 237 ACCGAGTCCGATGCTTCTTCTTCT--T------C----T-----G----GTG---AGTTT 272
Query 277 GATAATCTAAAGATGAAACTTCTTGATGATGAATTGGAGTTTGATTTCGCTGAAGACGAC 336
||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 273 GATAATCAAAAGATGAATCGTCTTGATGATGAATTGGAGTTTGATTTCGCTGAAGACGAC 332
Query 337 GACGACGTTGAAAGTGAAACCGAGTCGTCGAGGATTAACCCAACTCGCCGACGATCTAAG 396
|||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 333 GACG---TTGAAAGTGAAACCGAGTCGTCCAGGATTAACCCAACTCGGCGACGATCTAAA 389
Query 397 CGAACTCGGAAACTTGGATCGTTCGATTTCGACTTTAAGAAGCTAAAAACGAGCCAACCC 456
||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||
Sbjct 390 CGAACTCGGAAACTTGGATCGTTTGATTTCGACTTTGAGAAGCTAACAACGAGCCAACCC 449
Query 457 AGTGAGTTAGTGACGGAGCCAGAGCATCACAGCTCAGCTTCTGATACAACAACGGAGGAA 516
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 AGTGAGTTAGTGGCCGAGCCAGAGCATCACAGCTCAGCTTCTGATACAACAACGGAGGAA 509
Query 517 GATCTCGCCTTTTGTCTCATTATGCTCTcaagagacaaatggaagcaacagaagaagaag 576
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 510 GATCTCGCCTTTTGTCTCATTATGCTGTCCAGAGACAAATGGAAGCAACAGAAGAAGAAG 569
Query 577 aagcaacgtgtagaagaagaagatgagacagaTCATGACAGCGAAGATTGCAAGCCG-GA 635
|||||||||||||||||||| |||||||||||||||||| ||||||| ||| | |
Sbjct 570 AAGCAACGTGTAGAAGAAGA---TGAGACAGATCATGACAGTGAAGATTACAAATCAAG- 625
Query 636 CAAGAACAGAGGTAGATTCAAGTGTGAGACTTGTGGTAAAGTGTTTAAATCGTATCAAGC 695
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CAAGAGCAGAGGGAGATTCAAGTGTGAGACTTGTGGTAAAGTGTTTAAATCGTATCAAGC 685
Query 696 ATTAGGAGGACACAGAGCAAGTCACAAGAAGAACAAGGCATGCATGACGAAAACAGAGCA 755
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 686 ATTAGGAGGACACAGAGCAAGCCACAAGAAGAACAAGGCATGCATGACGAAAACAGAGCA 745
Query 756 AGTTAAAACAGAGTACGTTCTTGGAGCCAAGGAGAAGAAAGTTCATGAATGTCCGATTTG 815
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 746 AGTTGAAACAGAGTACGTTCTTGGAGTAAAGGAGAAGAAAGTTCATGAATGTCCGATCTG 805
Query 816 TTTTAGGGTTTTTACTTCAGGACAAGCACTTGGAGGTCATAAGAGATCTCACGGAAGTAA 875
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 806 TTTTAGGGTTTTTACTTCAGGGCAAGCACTTGGAGGTCATAAGAGATCTCACGGAAGTAA 865
Query 876 CATCGGAGCAGGAAGAGGATTGTCAGTAAGTCAAATTGTCCAAATCGACAAGGAAGAAGA 935
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 866 CATCGGAGCAGGAAGAGGATTGTCAGTAAGTCAAATTGTCCAAATCGA-A-G-AAGAAGT 922
Query 936 AGAAGAATCAGTGAAACAGAGGATGATTGATCTTAATCTTCCTGCACTTAATGAAGAAGA 995
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 923 A------TCAGTGAAACAGAGGATGATTGATCTTAATCTTCCTGCACCTAATGAAGAAGA 976
Query 996 TGAAACTTCTTTGGTGTTCGATGAATGGTGA 1026
|||||||||||||||||| ||||||||||||
Sbjct 977 TGAAACTTCTTTGGTGTTTGATGAATGGTGA 1007
Score = 110 bits (59), Expect = 4e-23
Identities = 70/75 (93%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 1042 tttgtttttttGGGGTTTGGTCAAATTTTATGTTAATGCAAAGGAGGCTACTTTTACATG 1101
|||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1062 TTTG-TTTTTTGGGGTTTGAT-TACTTTTATGTTAATGCAAAGGAGGCTACTTTTACATG 1119
Query 1102 TTCTAACGCCAAGTT 1116
|||||||||||||||
Sbjct 1120 TTCTAACGCCAAGTT 1134
> AT3G60580.1 | Symbols: | C2H2-like zinc finger protein | chr3:22393939-22395044
FORWARD LENGTH=1106
Length=1106
Score = 62.1 bits (33), Expect = 1e-08
Identities = 38/40 (95%), Gaps = 1/40 (3%)
Strand=Plus/Plus
Query 1067 TTTTATGTT-AATGCAAAGGAGGCTACTTTTACATGTTCT 1105
|||||| || ||||||||||||||||||||||||||||||
Sbjct 1067 TTTTATTTTAAATGCAAAGGAGGCTACTTTTACATGTTCT 1106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5