BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483645 Length=1116 Score E Sequences producing significant alignments: (Bits) Value AT2G45120.1 | Symbols: | C2H2-like zinc finger protein | chr2:... 1256 0.0 AT3G60580.1 | Symbols: | C2H2-like zinc finger protein | chr3:... 62.1 1e-08 > AT2G45120.1 | Symbols: | C2H2-like zinc finger protein | chr2:18603618-18604751 FORWARD LENGTH=1134 Length=1134 Score = 1256 bits (680), Expect = 0.0 Identities = 939/1051 (89%), Gaps = 69/1051 (7%) Strand=Plus/Plus Query 1 GTttctctactctttgttcttctctctctatctctgttctGTAA--------AT-TT--- 48 ||||||||||||||| |||||||||||||||||||||||||||| | || Sbjct 1 GTTTCTCTACTCTTTCTTCTTCTCTCTCTATCTCTGTTCTGTAATTTTTGTCGTGTTGAA 60 Query 49 --ATGGAGAGATACAAGTGTAGATTTTGCTTCAAGAGCTTCATCAATGGAAGAGCTTTAG 106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAATGGAGAGATACAAGTGTAGATTTTGCTTCAAGAGCTTCATCAATGGAAGAGCTTTAG 120 Query 107 GTGGTCACATGAAATCTCACATGCTTAGTCTTTCTGCAAAACGT-GAACTTTA-TGAA-T 163 |||||||||||| |||||||||||||| |||||||||| ||||| | | || | || | Sbjct 121 GTGGTCACATGAGATCTCACATGCTTACTCTTTCTGCAGAACGTTG---TGTAAT-AACT 176 Query 164 --T-AA-CTGGTGAAGAAGCAGAGGAACGCCCGAGTCAACTCAGTGACGACGACGA---T 216 | || | | ||||||| ||||||||| |||||||||||| ||||||||||||| | Sbjct 177 GGTGAAGCAGAAGAAGAAGTAGAGGAACGGCCGAGTCAACTCTGTGACGACGACGACGAT 236 Query 217 ACAGAGTCAGATGCTTCTTCTTCTGGTGAGGAACAAGATCATTTGAATTGTGGTGAGTTT 276 || ||||| ||||||||||||||| | | | | ||| ||||| Sbjct 237 ACCGAGTCCGATGCTTCTTCTTCT--T------C----T-----G----GTG---AGTTT 272 Query 277 GATAATCTAAAGATGAAACTTCTTGATGATGAATTGGAGTTTGATTTCGCTGAAGACGAC 336 ||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 273 GATAATCAAAAGATGAATCGTCTTGATGATGAATTGGAGTTTGATTTCGCTGAAGACGAC 332 Query 337 GACGACGTTGAAAGTGAAACCGAGTCGTCGAGGATTAACCCAACTCGCCGACGATCTAAG 396 |||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 333 GACG---TTGAAAGTGAAACCGAGTCGTCCAGGATTAACCCAACTCGGCGACGATCTAAA 389 Query 397 CGAACTCGGAAACTTGGATCGTTCGATTTCGACTTTAAGAAGCTAAAAACGAGCCAACCC 456 ||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| Sbjct 390 CGAACTCGGAAACTTGGATCGTTTGATTTCGACTTTGAGAAGCTAACAACGAGCCAACCC 449 Query 457 AGTGAGTTAGTGACGGAGCCAGAGCATCACAGCTCAGCTTCTGATACAACAACGGAGGAA 516 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 450 AGTGAGTTAGTGGCCGAGCCAGAGCATCACAGCTCAGCTTCTGATACAACAACGGAGGAA 509 Query 517 GATCTCGCCTTTTGTCTCATTATGCTCTcaagagacaaatggaagcaacagaagaagaag 576 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 510 GATCTCGCCTTTTGTCTCATTATGCTGTCCAGAGACAAATGGAAGCAACAGAAGAAGAAG 569 Query 577 aagcaacgtgtagaagaagaagatgagacagaTCATGACAGCGAAGATTGCAAGCCG-GA 635 |||||||||||||||||||| |||||||||||||||||| ||||||| ||| | | Sbjct 570 AAGCAACGTGTAGAAGAAGA---TGAGACAGATCATGACAGTGAAGATTACAAATCAAG- 625 Query 636 CAAGAACAGAGGTAGATTCAAGTGTGAGACTTGTGGTAAAGTGTTTAAATCGTATCAAGC 695 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 626 CAAGAGCAGAGGGAGATTCAAGTGTGAGACTTGTGGTAAAGTGTTTAAATCGTATCAAGC 685 Query 696 ATTAGGAGGACACAGAGCAAGTCACAAGAAGAACAAGGCATGCATGACGAAAACAGAGCA 755 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 686 ATTAGGAGGACACAGAGCAAGCCACAAGAAGAACAAGGCATGCATGACGAAAACAGAGCA 745 Query 756 AGTTAAAACAGAGTACGTTCTTGGAGCCAAGGAGAAGAAAGTTCATGAATGTCCGATTTG 815 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 746 AGTTGAAACAGAGTACGTTCTTGGAGTAAAGGAGAAGAAAGTTCATGAATGTCCGATCTG 805 Query 816 TTTTAGGGTTTTTACTTCAGGACAAGCACTTGGAGGTCATAAGAGATCTCACGGAAGTAA 875 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 806 TTTTAGGGTTTTTACTTCAGGGCAAGCACTTGGAGGTCATAAGAGATCTCACGGAAGTAA 865 Query 876 CATCGGAGCAGGAAGAGGATTGTCAGTAAGTCAAATTGTCCAAATCGACAAGGAAGAAGA 935 |||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 866 CATCGGAGCAGGAAGAGGATTGTCAGTAAGTCAAATTGTCCAAATCGA-A-G-AAGAAGT 922 Query 936 AGAAGAATCAGTGAAACAGAGGATGATTGATCTTAATCTTCCTGCACTTAATGAAGAAGA 995 | |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 923 A------TCAGTGAAACAGAGGATGATTGATCTTAATCTTCCTGCACCTAATGAAGAAGA 976 Query 996 TGAAACTTCTTTGGTGTTCGATGAATGGTGA 1026 |||||||||||||||||| |||||||||||| Sbjct 977 TGAAACTTCTTTGGTGTTTGATGAATGGTGA 1007 Score = 110 bits (59), Expect = 4e-23 Identities = 70/75 (93%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 1042 tttgtttttttGGGGTTTGGTCAAATTTTATGTTAATGCAAAGGAGGCTACTTTTACATG 1101 |||| |||||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 1062 TTTG-TTTTTTGGGGTTTGAT-TACTTTTATGTTAATGCAAAGGAGGCTACTTTTACATG 1119 Query 1102 TTCTAACGCCAAGTT 1116 ||||||||||||||| Sbjct 1120 TTCTAACGCCAAGTT 1134 > AT3G60580.1 | Symbols: | C2H2-like zinc finger protein | chr3:22393939-22395044 FORWARD LENGTH=1106 Length=1106 Score = 62.1 bits (33), Expect = 1e-08 Identities = 38/40 (95%), Gaps = 1/40 (3%) Strand=Plus/Plus Query 1067 TTTTATGTT-AATGCAAAGGAGGCTACTTTTACATGTTCT 1105 |||||| || |||||||||||||||||||||||||||||| Sbjct 1067 TTTTATTTTAAATGCAAAGGAGGCTACTTTTACATGTTCT 1106 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54718594050 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5