BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483646
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45130.1 | Symbols: ATSPX3, SPX3 | SPX domain gene 3 | chr2:... 992 0.0
> AT2G45130.1 | Symbols: ATSPX3, SPX3 | SPX domain gene 3 | chr2:18606410-18607853
FORWARD LENGTH=916
Length=916
Score = 992 bits (537), Expect = 0.0
Identities = 648/702 (92%), Gaps = 5/702 (1%)
Strand=Plus/Plus
Query 1 TTTATATTTTGATGAAGTTCGGGAAGAGGATTAAAGAACAGATACAAGAGTCGTTGCCGG 60
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 69 TTTATATTTTGATGAAGTTTGGAAAGAGGATTAAAGAACAGATACAAGAGTCGTTGCCGG 128
Query 61 AGTGGCGAGACAAGTTTCTCCGGTACAAGGAACTCAAGAATCTGATCTCTTCTCCGGCGC 120
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 129 AGTGGCGAGACAAGTTTCTTCGTTACAAGGAACTCAAGAATCTGATCTCTTCTCCGGCGC 188
Query 121 CGGCAGAATCTATTTTCGTTGGTTTGTTGAACACAGAGATTGACAAGTTTAATGCTTTCT 180
||| |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct 189 CGGTGGAATCTATTTTCGTCGGTTTGTTGAACGCAGAGATCGACAAGTTTAATGCTTTCT 248
Query 181 TTGTGGAACAAGAAGAAGATTTCATCATCCACCACAAGGAATTGCAATCTCGAATTCAGA 240
| || ||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 249 TCGTCGAACAAGAAGAAGATTTCATCATCCACCACAAGGAGTTGCAATATCGGATTCAGA 308
Query 241 GATTAGTAGGGAAATGTGGACACAATGATGAAATGTTTAGAGAGGAGATTAGTGAGATCA 300
|||| |||| |||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 309 GATTGGTAGAGAAATGTGGACACAATGATGAAATGTCTAGAGAGAATATTAGTGAGATCA 368
Query 301 GAAAAGATATTGTCAATTTCCACGGCGAAATGGTTCTTCTAGTAAATTACAGTAACATCA 360
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 369 GAAAAGATATTGTCAATTTCCATGGCGAAATGGTTCTGCTAGTAAACTACAGTAACATCA 428
Query 361 ATTATACTGGATTAGCAAAGATTTTAAAGAAGTACGACAAGAGAACAGGAGGAGGTTTAA 420
|||| |||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||
Sbjct 429 ATTACACTGGATTAGCAAAGATTCTAAAGAAGTACGACAAGCGAACAAGAGGAGGATTAA 488
Query 421 GATCGCCGTTTATACAGAAAGTTCTTCATCAACCATTTTTCAAGACTGATCTTGTTTCAA 480
|||| || ||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 489 GATCACCATTTATTCAAAAAGTTCTTCATCAACCGTTTTTCAAGACTGATCTTGTTTCAA 548
Query 481 GACTAGTGAGAGAGTGGGAGACGACAATGGACGCGGTGTTTCCGGTGACCATAGTGGAGG 540
||||||| ||||||||||||||||| |||||||||||| ||| |||| | | |||||
Sbjct 549 GACTAGTAAGAGAGTGGGAGACGACGATGGACGCGGTGGATCCAGTGAAGGTGGCGGAGG 608
Query 541 CGGAGG----CGGAGAGATGTGCGGCGGTGACTTCCGCAGCGGCGGGAGAAGGGATATTT 596
|||||| || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 609 CGGAGGGATACG-AGAGATGTGCGGCGGTGACTTCGGCAGCGGCGGGAGAAGGGATATTT 667
Query 597 AGGAATACCGTTGCGGCATTGTTGACAATGAAAGAGATGAGAAGAGGAAGTTCGACTTAT 656
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 668 AGGAATACGGTTGCGGCATTATTGACTATGAAAGAGATGAGAAGAGGAAGTTCGACTTAC 727
Query 657 AGTGCATTCTCACTACCACCGCTAAATATCTCCGATTCCGAT 698
|||||||||||||| || ||||||||||||||||||||||||
Sbjct 728 AGTGCATTCTCACTTCCGCCGCTAAATATCTCCGATTCCGAT 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35163902900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5