BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483647
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45140.1 | Symbols: PVA12 | plant VAP homolog 12 | chr2:1861... 1794 0.0
AT3G60600.1 | Symbols: VAP27-1, VAP, (AT)VAP, VAP27 | vesicle a... 636 0.0
AT1G51270.3 | Symbols: | structural molecules;transmembrane re... 492 4e-138
AT2G23830.1 | Symbols: | PapD-like superfamily protein | chr2:... 309 4e-83
> AT2G45140.1 | Symbols: PVA12 | plant VAP homolog 12 | chr2:18610806-18613290
FORWARD LENGTH=1262
Length=1262
Score = 1794 bits (971), Expect = 0.0
Identities = 1118/1186 (94%), Gaps = 21/1186 (2%)
Strand=Plus/Plus
Query 1 AATAACAATAAGTGAGTCTCCGGTCT-AAATTAATTAATTA-A--G---GAGAAACAAGA 53
|||||||| ||||||||||||||||| ||| ||||||| | | | |||||||||||
Sbjct 1 AATAACAAGAAGTGAGTCTCCGGTCTGAAACTAATTAAGGAGACGGCAAGAGAAACAAGA 60
Query 54 CATACG-TTGCTGTCCCACGTTGTTCTT-TTGTTTActctctctctctcCTCCATCGTCG 111
|||||| |||||||||||||||| |||| |||||||||||||||||||||||||||| ||
Sbjct 61 CATACGTTTGCTGTCCCACGTTGATCTTGTTGTTTACTCTCTCTCTCTCCTCCATCGGCG 120
Query 112 ACTACCACCGGAGATCAGAGTCACCGTACCAAAA-ATTCATTTGCCTTCATAAAGATTTG 170
|| ||||||||||||||| ||||||||||||||| | |||||| ||||| | |||||||
Sbjct 121 ACGACCACCGGAGATCAGCGTCACCGTACCAAAACA-TCATTTACCTTCTTTTAGATTTG 179
Query 171 tt-ttttttAATCAATTGATTGAATCGGAAT-AAATATCTCATCAGAAATGAGTAACGAG 228
|| |||||||||| | | |||||||||||| ||||||| ||||||| ||||||||||||
Sbjct 180 TTGTTTTTTAATC-A--G-TTGAATCGGAATAAAATATCGCATCAGAGATGAGTAACGAG 235
Query 229 CTTCTCACCATCGATCCTGTCGACCTTCAATTCCCTTTTGAATTGAAGAAGCAGATCTCT 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CTTCTCACCATCGATCCTGTCGACCTTCAATTCCCTTTTGAATTGAAGAAGCAGATCTCT 295
Query 289 TGTTCTCTCTATTTGGGTAACAAGACCGATAATTATGTCGCCTTCAAGGTTAAAACGACG 348
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 296 TGTTCTCTCTATTTGGGTAACAAGACCGATAATTATGTCGCCTTCAAGGTTAAGACGACG 355
Query 349 AATCCAAAGAAGTACTGCGTTAGGCCTAATACTGGTGTTGTTCATCCCAGATCCTCTTCT 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AATCCAAAGAAGTACTGCGTTAGGCCTAATACTGGTGTTGTTCATCCCAGATCCTCTTCT 415
Query 409 GAAGTTTTAGTGACCATGCAAGCTCAAAAGGAAGCTCCCGCTGATATGCAGTGTAAAGAT 468
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 416 GAAGTTTTAGTGACCATGCAAGCTCAAAAGGAAGCTCCTGCTGATCTGCAGTGTAAAGAT 475
Query 469 AAGTTCTTGCTTCAATGTGTAGTGGCTAGTCCCGGAGCCACCCCCAAGGATGTTACTCAT 528
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 476 AAGTTCTTGCTTCAATGTGTAGTCGCTAGTCCCGGAGCCACCCCCAAGGATGTTACACAT 535
Query 529 GAGATGTTTAGCAAAGAGGCAGGGCATCGAGTCGAAGAGACTAAATTGAGAGTTGTCTAT 588
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 536 GAGATGTTTAGCAAAGAGGCAGGGCATCGAGTTGAAGAGACTAAATTGAGAGTTGTCTAT 595
Query 589 GTTGCTCCACCACGACCACCATCACCGGTTCGAGAAGGATCTGAAGAGGGCTCTTCACCC 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GTTGCTCCACCACGACCACCATCACCGGTTCGAGAAGGATCTGAAGAGGGCTCTTCACCG 655
Query 649 AGGGCTTCTGTCTCCGATAATGGGAATGCTTCTGATTTCACTGCTGCTCCAAGATTTAGC 708
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 656 AGGGCTTCTGTCTCTGATAATGGGAATGCTTCTGATTTTACTGCTGCTCCAAGATTTAGC 715
Query 709 GCGGACAGGGTTGATGCTCAGGATAACTCATCTGAGGCAAGAGCTTTGGTCACAAGACTC 768
|| ||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||
Sbjct 716 GCAGACAGGGTTGATGCTCAGGATAATTCATCTGAGGCAAGAGCTCTGGTCACAAAACTC 775
Query 769 ACCGAGGAAAAGAACTCTGCAGTTCAATTGAACAACAGGCTTCAACAAGAATTGGACCAG 828
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 776 ACCGAGGAAAAGAACTCTGCGGTTCAACTGAACAACAGGCTTCAACAAGAATTGGACCAG 835
Query 829 TTGAAGCGCGAAAGCAAGAGAAGTCAGAGTGGTGGAATCCCGTTCATGTACGTTCTTCTG 888
|||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 836 TTGAGGCGCGAAAGCAAGAGAAGTAAGAGTGGTGGAATCCCTTTCATGTACGTTCTTCTG 895
Query 889 GTCGGACTAATCGGTTTAATCTTGGGATACATTATGAAGAGGACATGATCTGCTCGCTTC 948
||||| ||||||||||||||| |||||||||||||||||||||||||||| | || ||||
Sbjct 896 GTCGGCCTAATCGGTTTAATCCTGGGATACATTATGAAGAGGACATGATCAGATCCCTTC 955
Query 949 AACAAAATACTCCACAAGTCTCaaaagtgcttaaaaa-gcattgaaaaagaaagaaaatc 1007
|||||||||||||| |||||||||| ||||||||||| |||||||||| |||||||| ||
Sbjct 956 AACAAAATACTCCAAAAGTCTCAAA-GTGCTTAAAAAAGCATTGAAAAGGAAAGAAA-TC 1013
Query 1008 aaaTTGTGTGAGGAGGACACTCTTCTCTTCTGCCTTATCGTCGTCATGCACCTTTGATTA 1067
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1014 AAATTGTGTGAGGAGGACAATCTTCTCTTCTGCCTTATCGTCGTCATGCACCTTTGGTTA 1073
Query 1068 AAATTCTGAACTTAGTGCGTTAGAGGATTTGTATTACTGTTTCCACAAGACTTAGAATTT 1127
|||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1074 AAAT-CTGAACTTAGTGCGTTAGAGGATTTGTATTACGGTTTCCATAAGACTTAGAATTG 1132
Query 1128 TCACAAAGTCTCCTTTTTCATCTCTCTTTTTACAACTTTGTGTAGT 1173
||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 1133 TCACAAAATCTCCTTTTTCCTCTCTCTTATTACAACTTTGTGTAGT 1178
> AT3G60600.1 | Symbols: VAP27-1, VAP, (AT)VAP, VAP27 | vesicle
associated protein | chr3:22400395-22402702 FORWARD LENGTH=1207
Length=1207
Score = 636 bits (344), Expect = 0.0
Identities = 619/744 (83%), Gaps = 49/744 (7%)
Strand=Plus/Plus
Query 217 ATGAGT-A-A-CGAGCTTCTCACCATCGATCCTGTCGACCTTCAATTCCCTTTTGAATTG 273
|||||| | | ||||||||||||| |||| ||| |||| |||||||||||||||||||||
Sbjct 191 ATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTTCAATTCCCTTTTGAATTG 250
Query 274 AAGAAGCAGATCTCTTGTTCTCTCTATTTGG-GTAACAAGACCGATAATTATGTCGCCTT 332
||||||||||||||||| |||||||||||| | ||||||||||| ||| |||| |||||
Sbjct 251 AAGAAGCAGATCTCTTGCTCTCTCTATTTGACG-AACAAGACCGACAATAATGTTGCCTT 309
Query 333 CAAGGTTAAAACGACGAATCC-AAAGAAGTACTGCGTTAGGCCTAATACTGGTGTTGTTC 391
|||||||| ||||||||||| ||| ||||| || ||||||||||||||||| |||||||
Sbjct 310 TAAGGTTAAGACGACGAATCCGAAA-AAGTATTGTGTTAGGCCTAATACTGGAGTTGTTC 368
Query 392 ATCCC-AGATCCT-CTT-CTGAAGTT-TTAGTGACCATGCAAGCTCAAAAGGAAGCTCCC 447
|||| || || | ||| | |||||| || |||||||||||||||||||||||||||||
Sbjct 369 -TCCCGAGGTC-TACTTGC-GAAGTTCTT-GTGACCATGCAAGCTCAAAAGGAAGCTCCT 424
Query 448 GCTGATATGCAGTGTAAAGATAAGTT-CTTGCTTCAATGTGT-AGTGGCTAGTCCCGGAG 505
| ||||||||||| || || ||||| || ||||||| |||| | | |||||||| || |
Sbjct 425 TCCGATATGCAGTGCAAGGACAAGTTTCT-GCTTCAAGGTGTGA-TAGCTAGTCCTGGTG 482
Query 506 CCACCCCCAAGGATGTTACTCATGAGATGTTTAGCAAAGAGGCAGGGCATCGAGTCGAAG 565
||| ||||||| ||||||| ||||||||||||||||||||| || |||||||| || |
Sbjct 483 TCACAGCCAAGGAAGTTACTCCTGAGATGTTTAGCAAAGAGGCTGGACATCGAGTTGAGG 542
Query 566 AGACTAAATTGAGAGTTGTCT-ATGTTGCTCCACCACGACCACCATCACCGGTTCGA-GA 623
| |||||| |||||||| || ||||||||||||||||||||||||||||||||| | ||
Sbjct 543 AAACTAAACTGAGAGTTA-CTTATGTTGCTCCACCACGACCACCATCACCGGTTC-ACGA 600
Query 624 AGGATCTGAAGAGGGCTCTTCACCCAGGGCTTCTGTCTCCGATAATGGGA-ATGCTTCTG 682
||||||||||||||| ||||||||||||||||||||||| |||||||| | ||| |||||
Sbjct 601 AGGATCTGAAGAGGGTTCTTCACCCAGGGCTTCTGTCTCAGATAATGG-ACATGGTTCTG 659
Query 683 A-TTTCACTGCTGCTCCA-AGATTTAGCGCGGACAG---GGTTG-ATGCTCAGGATAACT 736
| ||| | | | | | ||||||| || ||||| || || | ||| || |||
Sbjct 660 AATTTT-C-GTT--TG-AGAGATTTATCGTGGACAACAAGGCTGGACA-TCAAGAAAACA 713
Query 737 CATCTGAGGCAAGAGCTTTGGTCAC-AAGACTCACCGAGGAAAAGA-ACTCTGC-AGTTC 793
|||||||||| || || | | || ||| || ||||| ||||| | | ||||| | |||
Sbjct 714 CATCTGAGGCGAGGGCACTCATTACCAAG-CTAACCGAAGAAAA-ACAGTCTGCCA-TTC 770
Query 794 AATTGAACAACAGGCTTCAACA-AGAATTGGACCAGTTGAAG-CGCGAAAGCAAGA-GAA 850
|| |||||||||| |||||| | |||| |||| ||||| ||| || |||||||| | ||
Sbjct 771 AACTGAACAACAGACTTCAA-AGAGAACTGGATCAGTT-AAGGCGTGAAAGCAAAAAGA- 827
Query 851 GTCAGAGTGGTGGAATCCCGTTCATGTACGTTCTTCTGGTCGGACTAATCGGTTTAATCT 910
| || |||||||| ||||| ||||||||||||||| |||||||||| |||||| |||| |
Sbjct 828 GCCAAAGTGGTGGTATCCCATTCATGTACGTTCTTTTGGTCGGACTCATCGGTCTAATTT 887
Query 911 TGGGATACATTATGAAGAGGACAT 934
||||||||||||||||||||||||
Sbjct 888 TGGGATACATTATGAAGAGGACAT 911
> AT1G51270.3 | Symbols: | structural molecules;transmembrane
receptors;structural molecules | chr1:19007510-19011272 FORWARD
LENGTH=2028
Length=2028
Score = 492 bits (266), Expect = 4e-138
Identities = 409/478 (86%), Gaps = 9/478 (2%)
Strand=Plus/Plus
Query 210 ATCAGAAATGAGTAACGAGCTTCTCACCATCGATCCTGTCGACCTTCAATTCCCTTTTGA 269
||||| ||||||| |||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct 575 ATCAG-AATGAGTGACGAGCTTCTCATCATCGATCCTGTCGACGTTCAATTCCCTATTGA 633
Query 270 ATTGAAGAAGCAGA-TCTCTTGTTCTCTCTATTTGGGTAACAAGACCGATAATTATGTCG 328
| |||| ||| | | | ||||| |||||| ||||| |||||||||||| |||||||| |
Sbjct 634 ACTGAACAAG-AAAGTGTCTTGCTCTCTCAATTTGACTAACAAGACCGAAAATTATGTGG 692
Query 329 CCTTCAAGGTTAAAACGACGAATCCAAAGAAGTACTGCGTTAGGCCTAATACTGGTGTTG 388
||||||||| ||||||||| ||| |||||||||| | || ||||||||| ||||||||
Sbjct 693 CCTTCAAGGCTAAAACGACCAATGCAAAGAAGTATTATGTCAGGCCTAATGTTGGTGTTG 752
Query 389 TTCATCCCAGATCCTCTTCTGAAGTTTTAGTGACCATGCAAGCTCAAAAGGAAGCTCCCG 448
||| ||| |||||||||| |||||| ||||||| ||||||||| | |||||||||||| |
Sbjct 753 TTCTTCCAAGATCCTCTTGTGAAGTGTTAGTGATCATGCAAGCACTAAAGGAAGCTCCGG 812
Query 449 CTGATATGCAGTGTAAAGATAAGTTCTTGCTTCAATGTGTAGTGGCTAG-TCCCGGAGCC 507
||||||||||||| | ||| ||||| ||| |||| ||| ||||| | | || | | ||
Sbjct 813 CTGATATGCAGTGCAGAGACAAGTTATTGTTTCAGTGTAAAGTGG-TGGAACCAGAAACC 871
Query 508 ACCCCCAAGGATGTTAC-TCATGAGATGTTTAGCAAAGAGGCAGGGCATCGAG-TCGAAG 565
|| ||||||||||||| || ||||||||||||||||||||||||||||| || | || |
Sbjct 872 ACGGCCAAGGATGTTACTTC-TGAGATGTTTAGCAAAGAGGCAGGGCATCCAGCT-GAGG 929
Query 566 AGACTAAATTGAGAGTTGTCTATGTTGCTCCACCACGACCACCATCACCGGTTCGAGAAG 625
|||||| ||||| |||| | |||||| ||||||||| ||||||||||||||||| |||||
Sbjct 930 AGACTAGATTGAAAGTTATGTATGTTACTCCACCACAACCACCATCACCGGTTCAAGAAG 989
Query 626 GATCTGAAGAGGGCTCTTCACCCAGGGCTTCTGTCTCCGATAATGGGAATGCTTCTGA 683
|| | ||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 990 GAACAGAAGAGGGCTCTTCACCAAGAGCTTCTGTCTCAGATAATGGGAATGCTTCTGA 1047
> AT2G23830.1 | Symbols: | PapD-like superfamily protein | chr2:10143646-10144511
FORWARD LENGTH=450
Length=450
Score = 309 bits (167), Expect = 4e-83
Identities = 346/429 (81%), Gaps = 25/429 (6%)
Strand=Plus/Plus
Query 223 AACGAGCTTCTC-ACCATCGATCCTGTCG-ACCTTCAATTCCCTTTTGAATTGAAGAAGC 280
|||||||||||| | ||||| ||| | | | ||||||||||||||||||||||||||||
Sbjct 10 AACGAGCTTCTCGA-AATCGAGCCTAT-GTATCTTCAATTCCCTTTTGAATTGAAGAAGC 67
Query 281 AGATCTCTTGTTCTCTCTATTTGG-GTAACAAGACCGATAATTATGTCGCCTTCAAGGTT 339
|||| ||||| ||||| || ||| | |||||||| || ||| | || ||||| ||||||
Sbjct 68 AGATGTCTTGCTCTCTTTACTTGACG-AACAAGACAGACAATAACGTGGCCTTTAAGGTT 126
Query 340 AAAACGACGAATCCAAAGAAGTACTGCGTTAGGCCTAAT-ACTGGTGTTGTTCATCCCA- 397
|| ||||| |||| || || || ||||||||||||||| | ||| || ||| ||| |
Sbjct 127 AAGACGACAAATCGGAACAACTATTGCGTTAGGCCTAATTA-TGGACTTATTCTTCCAAA 185
Query 398 GATCCTCTTCTGAAGTT-TTAGTGACCATGCAAGCTCAAAAGGAAGCTCCCGCTGATATG 456
| || ||| | ||||| || ||||||||||||||||||||||||| ||| ||||||||
Sbjct 186 G-TCGACTTGTAAAGTTCTT-GTGACCATGCAAGCTCAAAAGGAAGTTCCTTCTGATATG 243
Query 457 CAGTG-TAAAGATAAGTTCT-TGCTTCAATGTGTAGTGGCTAGTCCCGGAGCCACCCCCA 514
||| | | || ||||| | || ||||| ||||| |||||||||| |||| ||| |||
Sbjct 244 CAGAGCTTT-GAAAAGTT-TATGATTCAAAGTGTACTGGCTAGTCCTGGAGTCACAGCCA 301
Query 515 AGGATGTTACTCATGAGATGTTTAGCAAAGAGGCAGGGCATCG-AGTCGAAGAGACTAAA 573
| || ||||||| |||||||||||||||||| |||||||| | ||| || |||||||||
Sbjct 302 AAGAAGTTACTCGTGAGATGTTTAGCAAAGAATCAGGGCAT-GTAGTTGAGGAGACTAAA 360
Query 574 TTGAGAGTTGTCT-ATGTT-GCTCCACCACGACCACCATCACCGGTTCGAG-AAGGATCT 630
|||||||| || ||||| ||||||||||||||| |||||| |||| | ||||| ||
Sbjct 361 CTGAGAGTTA-CTTATGTTTGCTCCACCACGACCAACATCACTAGTTC-ACCAAGGA-CT 417
Query 631 -GAAGAGGG 638
||||||||
Sbjct 418 AGAAGAGGG 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59136242010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5