BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483649
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45150.1 | Symbols: CDS4 | cytidinediphosphate diacylglycero... 1229 0.0
> AT2G45150.1 | Symbols: CDS4 | cytidinediphosphate diacylglycerol
synthase 4 | chr2:18613305-18615717 FORWARD LENGTH=1760
Length=1760
Score = 1229 bits (665), Expect = 0.0
Identities = 778/831 (94%), Gaps = 13/831 (2%)
Strand=Plus/Plus
Query 24 AATGACACACACAAACACACTC-T-CTCCGACATGATGATGATTCAGAGATTTTGA-TTT 80
||||||| | || ||||||||| | ||| ||||||||||||||||||||||||||| |||
Sbjct 97 AATGACAAATACGAACACACTCTTCCTCAGACATGATGATGATTCAGAGATTTTGATTTT 156
Query 81 TCAAGAAAACTCTCTTTTTCCTC-TGtt-ttttt-CC-C-T--ATCATTTTGAAAGCAAT 133
||||||||||||| ||||||||| | || ||||| || | | ||||| || ||||||
Sbjct 157 TCAAGAAAACTCTGTTTTTCCTCTTTTTGTTTTTGCCTCTTGGGGCATTTGGAGAGCAAT 216
Query 134 GGCGTCTTTTGCTGAACTTGTTTTATCGACTTCTCGCTGTACATGCCCTTGCCGTTCATT 193
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 GGCGACTTTTGCTGAACTTGTTTTATCGACTTCTCGCTGTACATGCCCTTGCCGTTCATT 276
Query 194 CTCTAAAAAACCCTTAATTCTTCCCCCTTTATCTGGTCTGCGTCTCGTCGGTGGTGATAC 253
| ||| ||||||| |||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 277 CACTAGAAAACCCCTAATTCGTCCCCCTTTATCTGGTCTGCGTCTC--C-CCGGTGATAC 333
Query 254 CAAACCATTGTTTCGTTCCGGCCTTGGTCCGATTTCCGTTAAACGGCGTTTCCTCACTGC 313
||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||| ||
Sbjct 334 CAAACCATTGTTTCGTTCCGGACTTGGTCGGATTTCTGTTAGCCGGCGTTTCCTCACGGC 393
Query 314 CGTTGCTCGAGCTGAATCAGACCAGCTTGGTGATGATGACAACTCAAAGGGAATTGATAG 373
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 394 CGTTGCTCGAGCTGAATCAGACCAGCTTGGTGATGATGACCACTCAAAGGGAATTGATAG 453
Query 374 AATCCATGACTTGCAAAATGTGGAAGATAAGCAGAAGAAAGCAAGCCAGCTTAAGAAAAG 433
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AATCCATAACTTGCAGAATGTGGAAGATAAGCAGAAGAAAGCAAGCCAGCTTAAGAAAAG 513
Query 434 AGTGATCTTTGGTATTGGCATTGGATTACCTGTTGGATGTGTTGTGTTAGCTGGAGGATG 493
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 514 AGTGATCTTTGGTATTGGCATTGGTTTACCTGTTGGATGTGTTGTGTTAGCTGGAGGATG 573
Query 494 GGTTTTCACTGTAGCCTTAGCAGCTTCTGTTTTTATCGGTTCCCGCGAATATTTCGAGCT 553
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 574 GGTTTTCACTGTAGCTTTAGCATCTTCTGTTTTTATCGGTTCCCGCGAATATTTCGAGCT 633
Query 554 CGTTAGAAGTAGAGGCATAGCTAAAGGAATGACACCTCCTCCACGATATGTCTCTCGAGT 613
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 634 TGTTAGAAGTAGAGGCATAGCTAAAGGAATGACTCCTCCTCCACGATATGTATCTCGAGT 693
Query 614 TTGCTCAGTTATATGTGCCCTTATGCCCATACTTACACTGTACTTTGGTAACATTGATAT 673
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TTGCTCGGTTATATGTGCCCTTATGCCCATACTTACACTGTACTTTGGTAACATTGATAT 753
Query 674 ATTGGTGACATCCGCAGCATTTCTTGTTGCAATAGCATTGTTAGTACAGAGGGGATCCCC 733
|||||||||||| ||||||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 754 ATTGGTGACATCTGCAGCATTTGTTGTTGCAATAGCATTGTTAGTACAAAGAGGATCCCC 813
Query 734 ACGTTTTTCTCAGCTGAGTAGTACAATGTTTGGTCTATTTTACTGTGGTTATCTCCCTTG 793
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 814 ACGTTTTGCTCAGCTGAGTAGTACAATGTTTGGTCTGTTTTACTGTGGTTATCTCCCTTC 873
Query 794 TTTCTGGGTTAAGCTTCGCTGTGGTTTAGCTGCTCCTGCGCTTAACACTGG 844
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 TTTCTGGGTTAAGCTTCGCTGTGGTTTAGCTGCTCCTGCGCTTAACACTGG 924
Score = 931 bits (504), Expect = 0.0
Identities = 578/614 (94%), Gaps = 4/614 (1%)
Strand=Plus/Plus
Query 877 GTATTGGAAAGACATGGCCAATTCTTCTTGGTGGTCAAGCTCATTGGACAGTTGGACTTG 936
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 GTATCGGAAGGACATGGCCAATTCTTCTTGGTGGTCAAGCTCATTGGACAGTTGGACTTG 983
Query 937 TGGCAACATTGATTTCTTTTAGCGGTGTAATTGCGACGGACACATTTGCTTTTCTCGGTG 996
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 984 TGGCAACATTGATTTCTTTCAGCGGTGTAATTGCGACAGACACATTTGCTTTTCTCGGTG 1043
Query 997 GCAAGGCTTTTGGTAGGACACCTCTTACTAGTATTAGTCCCAAAAAGACATGGGAAGGGA 1056
| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1044 GAAAGACTTTTGGTAGGACACCTCTTACTAGTATTAGTCCCAAGAAGACATGGGAAGGAA 1103
Query 1057 CTTTTGTAGGACTTGTTGGTTGTATAGCCATTACCAT-TCTACTCTCTAAATCTCTTAGT 1115
|| |||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||
Sbjct 1104 CTATTGTAGGACTTGTTGGTTGTATAGCCATTACCATAT-TACTCTCTAAATATCTCAGT 1162
Query 1116 TGGCCTCAATCTCTGTTCAGCTCAATAGCTTTTGGGTTTCTTAACTTCTTTGGGTCAGTC 1175
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1163 TGGCCACAATCTCTGTTCAGCTCAGTAGCTTTTGGGTTTCTTAACTTCTTTGGGTCAGTC 1222
Query 1176 TTTGGTGATCTTACTGAATCAATGATCAAGCGTGATGCCGGCGTCAAAGACTCTGGTTCA 1235
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1223 TTTGGTGATCTTACTGAATCAATGATCAAGCGTGATGCTGGCGTCAAAGACTCTGGTTCA 1282
Query 1236 CTCATCCCAGGACACGGAGGAATATTAGATAGAGTTGATAGTTACATTTTCACCGGCGCA 1295
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 CTTATCCCAGGACACGGTGGAATATTAGATAGAGTTGATAGTTACATTTTCACCGGCGCA 1342
Query 1296 CTAGCTTATTCATTCATCAAAACATCCCTAAGACTTTATGGAGTTTGATGATCTACCGGA 1355
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1343 TTAGCTTATTCATTCATCAAAACATCCCTAAAACTTTACGGAGTTTGATGATCTACCGGA 1402
Query 1356 AATACCATAGCTTC-GGTAAACTTACAAGCATTTCCACGATAAAATCCGGCAATGTAGCT 1414
|| |||||| ||| || |||||||||||||| |||| | ||| ||||||||||||||||
Sbjct 1403 AAGACCATATCTTTAGG-AAACTTACAAGCATATCCATGGTAAGATCCGGCAATGTAGCT 1461
Query 1415 GTGAAACAAATGGTGCAGTGTTCACTGTTGTTGCCTTTGAAAGATGCAGAGGACTAGGAG 1474
||||||||||||||||||||||| |||||| | |||||||||||||||||||| | | ||
Sbjct 1462 GTGAAACAAATGGTGCAGTGTTCTCTGTTGCTACCTTTGAAAGATGCAGAGGATTTGAAG 1521
Query 1475 GTGAAAGCAGAGCC 1488
||||||||||||||
Sbjct 1522 GTGAAAGCAGAGCC 1535
Score = 126 bits (68), Expect = 6e-28
Identities = 116/136 (85%), Gaps = 15/136 (11%)
Strand=Plus/Plus
Query 1489 GTTTGGTTTATGTTTG--ATAGTTGACCCAAAAGGGCAG----T-CT-TTT-GAGGTGCA 1539
|||||||||||||||| |||||||||||| |||||||| | || ||| | ||||||
Sbjct 1594 GTTTGGTTTATGTTTGATATAGTTGACCCAGAAGGGCAGTCTTTACTCTTTAGGGGTGCA 1653
Query 1540 TAATTTGGTAGTCATACGAATTATTATTTTTAGATAAATTTTAAGCTTCTTAGGAACTCT 1599
|||||||||||| ||||| ||||||||||||||| ||||| | | ||||||||||||
Sbjct 1654 TAATTTGGTAGTTATACGGATTATTATTTTTAGACAAATT--A---T-CTTAGGAACTCT 1707
Query 1600 TTATTCTTATGAAAAA 1615
||||||||||||||||
Sbjct 1708 TTATTCTTATGAAAAA 1723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79768666005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5