BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483652
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45170.1 | Symbols: ATATG8E, ATG8E | AUTOPHAGY 8E | chr2:186... 1013 0.0
> AT2G45170.1 | Symbols: ATATG8E, ATG8E | AUTOPHAGY 8E | chr2:18624264-18625717
FORWARD LENGTH=683
Length=683
Score = 1013 bits (548), Expect = 0.0
Identities = 632/668 (95%), Gaps = 23/668 (3%)
Strand=Plus/Plus
Query 1 ATCCAATCATAGACGAAAAGCAAAAGGTTCCtttttttGACTTTGTATCCATCCGTAGat 60
|||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 1 ATCCAATCATAGACGAAAAGAAAAAGGTTCCTTTTTTTGACTTTG--T--ATCCGTAGAT 56
Query 61 catcatcatcatcatcTTCTTCTTCCAGAG---T-T--TTATCC-TT--ATCAAATTCTC 111
|||| | || | |||||||||||||||| | | |||||| || |||||||||||
Sbjct 57 CATC-T--TC-T--TCTTCTTCTTCCAGAGTTTTATCCTTATCCGTTCCATCAAATTCTC 110
Query 112 TCTCTAAGCAAAGATGAATAAAGGAAGCAGCTTTAAGATGGACAACGATTTCGAGAAGAG 171
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 111 TCTCTAAGCAAAGATGAATAAAGGAAGCATCTTTAAGATGGACAACGATTTCGAAAAGAG 170
Query 172 AAAGGCTGAAGCTGGAAGGATCAGGGAGAAATACCCTGATCGAATTCCTGTGATTGTGGA 231
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 AAAAGCTGAAGCTGGAAGGATCAGGGAGAAATACCCTGATCGAATTCCTGTGATTGTGGA 230
Query 232 AAAGGCTGAGAAAAGTGAAGTCCCAAATATAGACAAGAAGAAGTACCTTGTTCCATCAGA 291
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 231 AAAGGCTGAGAAAAGTGAAGTCCCAAATATAGACAAGAAGAAGTACCTTGTGCCATCAGA 290
Query 292 CCTAACAGTTGGTCAATTTGTGTATGTGATTCGGAAGAGAATCAAACTAAGTGCAGAGAA 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CCTAACAGTTGGTCAATTTGTGTATGTGATTCGGAAGAGAATCAAACTAAGTGCAGAGAA 350
Query 352 AGCTATCTTCATTTTCGTAGACAATGTTCTTCCTCCTACAGGAGAGCTAATGTCAAGCGT 411
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 351 AGCTATCTTCATTTTCGTAGACAATGTTCTTCCTCCAACAGGAGAGCTAATGTCAAGCGT 410
Query 412 TTACGAGGATAAGAAAGACGAAGATGGCTTCCTTTACATCACTTACAGTGGCGAGAACAC 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TTACGAGGATAAGAAAGACGAAGATGGCTTCCTTTACATCACTTACAGTGGCGAGAACAC 470
Query 472 ATTCGGTGCTTCTTCAATCTAATCTCTGACCT--GAGAAACGGCCACGTATTAATGCTTC 529
|||||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||
Sbjct 471 ATTCGGTGCTTCTTCAATCTAATCTCTGACCTCTGAGAATCCGCCACGTTTTAATGCTTC 530
Query 530 TTCCCAACTTTCAATTTGTGTGTATAGTTTGCTCTCAATCTTTATCATTTCTCAAATAAT 589
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 531 TTCCCAACTTTCAATTTGTGTGTATAGTTTGTTCTCAATATTTATCATTTCTCAAATAAT 590
Query 590 TGTGATTACTATCATCTTT-CACTTGTAAAAAATGTACATAGACTAATCTTATAATATTA 648
||||||||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||
Sbjct 591 TGTGATTACTATCTTCTTTTCACTTGTTAAAA-TGTACATAGACTAATCTTATAATATTA 649
Query 649 TCTTCCTT 656
||||||||
Sbjct 650 TCTTCCTT 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31697746757
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5