BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483663
Length=1831
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45300.1 | Symbols: | RNA 3'-terminal phosphate cyclase/eno... 2734 0.0
AT1G48860.1 | Symbols: | RNA 3'-terminal phosphate cyclase/eno... 2309 0.0
> AT2G45300.1 | Symbols: | RNA 3'-terminal phosphate cyclase/enolpyruvate
transferase, alpha/beta | chr2:18677311-18680072
FORWARD LENGTH=1974
Length=1974
Score = 2734 bits (1480), Expect = 0.0
Identities = 1680/1774 (95%), Gaps = 23/1774 (1%)
Strand=Plus/Plus
Query 33 CAAAAGTGTTTATATTTGCAAAGCCGCCAAA--GTAGTCGAGAGTTTATAAATTTCATTT 90
|||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||||
Sbjct 71 CAAAAGTGTTTATATTAGCAAAGCCGCCAAAGTGTAAACGAAAGTTTATAAATTTCATTT 130
Query 91 CTGTGATCTGTGCGTAATTGGAGGAAGAT--AGATTTCTCAAAACCCCATTTTTCGATTG 148
||||||||| | ||||||||||||||||| | |||| || || ||||||| ||||||||
Sbjct 131 CTGTGATCT-TACGTAATTGGAGGAAGATCAAAATTT-TC-AATCCCCATTCTTCGATTG 187
Query 149 CTTCAATTGAAG-TTCTCCAATGGCGCAAGTTAGCAGAATCTGCAGTGGTGTGCAGAACC 207
|||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 188 CTTCAATTGAAGTTTCTCCGATGGCGCAAGTTAGCAGAATCTGCAATGGTGTGCAGAACC 247
Query 208 CATGTGTTATCTCTAATCTCTCGAAATCCAGCCAACGCAAATCTCCGTTATCGGTTTCTC 267
||| | ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 248 CATCTCTTATCTCCAATCTCTCGAAATCCAGTCAACGCAAATCTCCCTTATCGGTTTCTC 307
Query 268 T------G-A--AGCATCCACGAGCTTATCCGA-TT--TCGTCGTGGGGATTGAAGAAGA 315
| | | ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 308 TGAAGACGCAGCAGCATCCACGAGCTTATCCGATTTCGTCGTCGTGGGGATTGAAGAAGA 367
Query 316 GTGGGATGACGTTAATTGGTTCTGAGATTCGTCCGGTTAAGGTTATGGCTTCTGTTTCCA 375
||||||||||||||||||| |||||| ||||||| ||||||| ||| ||||||||||||
Sbjct 368 GTGGGATGACGTTAATTGGCTCTGAGCTTCGTCCTCTTAAGGTCATGTCTTCTGTTTCCA 427
Query 376 CGGCGGAGAAAGCGTCGGAGATTGTGCTTCAACCCATTAGAGAAATTTCGGGTCTTATTA 435
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 428 CGGCGGAGAAAGCGTCGGAGATTGTACTTCAACCCATTAGAGAAATCTCCGGTCTTATTA 487
Query 436 AGCTCCCTGGCTCCAAGTCTCTGTCTAATCGGATCCTGCTTCTCGCTGCTCTATCTGAGG 495
|||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 488 AGCTTCCTGGCTCCAAGTCTCTATCAAATCGGATCCTGCTTCTCGCTGCTCTGTCTGAGG 547
Query 496 GAACTACTGTAGTGGACAACTTGTTGAACAGTGATGACATCAATTACATGCTTGATGCGT 555
|||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 548 GAACAACTGTAGTGGACAACTTGTTGAATAGCGATGACATCAATTACATGCTTGATGCGT 607
Query 556 TGAAGAGATTGGGACTTAATGTGGAAACTGACAGTGAAAACAATCGTGCCGTAGTTGAAG 615
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 608 TGAAGAGATTGGGACTTAATGTGGAAACTGACAGTGAAAATAATCGTGCTGTAGTTGAAG 667
Query 616 GATGTGGCGGCATATTCCCAGCTTCCATTGATTCAAAGAGTGATATCGAACTTTACCTCG 675
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 668 GATGTGGCGGGATATTCCCAGCTTCCATAGATTCAAAGAGTGATATCGAACTTTACCTCG 727
Query 676 GTAATGCAGGAACAGCAATGCGTCCACTTACCGCTGCGGTTACTGCTGCAGGTGGAAATG 735
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 728 GTAATGCAGGAACAGCAATGCGTCCACTTACCGCTGCGGTCACTGCTGCAGGTGGAAACG 787
Query 736 CGAGTTATGTGCTTGATGGGGTGCCTCGGATGAGAGAAAGACCTATAGGGGATTTGGTTG 795
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 788 CAAGTTATGTGCTTGATGGGGTGCCTCGTATGAGAGAAAGACCTATAGGGGATTTGGTTG 847
Query 796 TTGGTCTTAAGCAGCTTGGTGCTGATGTTGAATGTACTCTTGGAACTAACTGCCCTCCTG 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TTGGTCTTAAGCAGCTTGGTGCTGATGTTGAATGTACTCTTGGAACTAACTGCCCTCCTG 907
Query 856 TTCGTGTCAACGCTAATGGTGGCCTTCCTGGTGGAAAGGTGAAGCTTTCTGGATCAATTA 915
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 908 TTCGTGTCAACGCTAATGGTGGCCTTCCCGGTGGAAAGGTGAAGCTTTCTGGATCAATTA 967
Query 916 GTAGTCAGTACTTGACTGCTTTGCTCATGGCAGCTCCCTTAGCTCTTGGAGACGTCGAGA 975
|||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 968 GTAGTCAGTACTTGACTGCTCTGCTCATGTCTGCTCCCTTAGCTCTTGGAGACGTCGAGA 1027
Query 976 TTGAGATAGTCGATAAATTGATTTCTGTTCCATATGTTGAAATGACATTGAAGTTGATGG 1035
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 TTGAGATTGTCGATAAATTAATTTCTGTTCCATATGTTGAAATGACATTGAAGTTGATGG 1087
Query 1036 AACGTTTTGGGGTTAGTACCGAGCATAGTGATAGCTGGGACCGTTTCTTTGTTAAGGGCG 1095
||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1088 AACGTTTCGGGGTTAGTGTCGAGCATAGTGATAGCTGGGATCGTTTCTTTGTCAAGGGCG 1147
Query 1096 GGCAAAAATACAAGTCGCCTGGTAATGCGTACGTAGAAGGTGATGCTTCTAGTGCTAGTT 1155
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1148 GGCAAAAATACAAGTCTCCGGGTAATGCGTATGTAGAAGGTGATGCTTCTAGTGCTAGTT 1207
Query 1156 ATTTCTTGGCTGGTGCTGCCATTACCGGTGAAACTGTCACTGTTGAAGGTTGTGGAACTA 1215
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1208 ATTTCTTGGCTGGTGCTGCCATTACCGGTGAAACTGTCACAGTCGAAGGTTGTGGAACTA 1267
Query 1216 CCAGCTTGCAGGGAGATGTAAAATTCGCCGAGGTCCTTGAGAAAATGGGATGTAAAGTGT 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 CCAGCTTGCAGGGAGATGTAAAATTCGCCGAGGTCCTTGAGAAAATGGGATGTAAAGTGT 1327
Query 1276 CCTGGACAGAGAACAGTGTGACTGTGACAGGACCACCTAGAGATGCTTTTGGAATGAGAC 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 CCTGGACAGAGAACAGTGTGACTGTGACAGGACCACCTAGAGATGCTTTTGGAATGAGAC 1387
Query 1336 ACTTGCGCGCTATTGATGTCAACATGAACAAAATGCCTGATGTAGCCATGACTCTTGCCG 1395
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1388 ACTTGCGGGCTATTGATGTCAACATGAACAAAATGCCTGATGTAGCCATGACCCTTGCCG 1447
Query 1396 TCGTTGCTCTCTTTGCTGACGGTCCAACTACCATTAGAGATGTGGCTAGCTGGAGAGTAA 1455
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1448 TCGTTGCTCTCTTTGCTGACGGTCCAACCACCATTAGAGATGTGGCTAGCTGGAGAGTAA 1507
Query 1456 AGGAGACAGAAAGGATGATTGCCATTTGCACAGAGCTTAGAAAGCTGGGAGCTACAGTGG 1515
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1508 AGGAGACAGAAAGGATGATTGCCATTTGCACAGAGCTTAGAAAACTGGGAGCTACAGTGG 1567
Query 1516 AAGAAGGTTCAGATTATTGTGTGATAACACCACCAAAAAAGGTGAAACCGGCAGAGATTG 1575
|||||||||||||||||||||||||||| || || |||||||||||| ||||||||||||
Sbjct 1568 AAGAAGGTTCAGATTATTGTGTGATAACTCCGCCCAAAAAGGTGAAAACGGCAGAGATTG 1627
Query 1576 ATACATATGATGATCATAGAATGGCAATGGCATTCTCTCTTGCAGCTTGTGCTGATGTTC 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 ATACATATGATGATCATAGAATGGCAATGGCATTCTCTCTTGCAGCTTGTGCTGATGTTC 1687
Query 1636 CAATCACCATCAATGATCCCGGTTGCACCAGGAAAACCTTCCCCGACTACTTCCAAGTCC 1695
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1688 CAATCACCATCAACGATCCTGGTTGCACCAGGAAAACCTTCCCCGACTACTTCCAAGTAC 1747
Query 1696 TTGAAAGAATCACAAAGCACTAAACAAAAAACTTCTGTGtttttttttCTGATCCAAGCT 1755
||||||||||||||||||||||||||| ||||| |||| ||||| || ||||||||||||
Sbjct 1748 TTGAAAGAATCACAAAGCACTAAACAATAAACT-CTGT-TTTTTCTT-CTGATCCAAGCT 1804
Query 1756 TATCTGTTTCCATATTTCTTGCCTCTGTAACATT 1789
||||||||||||| ||||||| |||||||| |||
Sbjct 1805 TATCTGTTTCCATTTTTCTTGTCTCTGTAATATT 1838
> AT1G48860.1 | Symbols: | RNA 3'-terminal phosphate cyclase/enolpyruvate
transferase, alpha/beta | chr1:18068707-18071466
REVERSE LENGTH=1886
Length=1886
Score = 2309 bits (1250), Expect = 0.0
Identities = 1421/1504 (94%), Gaps = 10/1504 (1%)
Strand=Plus/Plus
Query 296 GTCGTGGGGATTGAAGAAGAGTGGGATGACGTTAATTGGTTCTGAGATTCGTCCGGTTAA 355
||||||||||||||||||||||| ||| | ||| |||||||||||||||||| || ||
Sbjct 279 GTCGTGGGGATTGAAGAAGAGTGATCTGATGCTAAATGGTTCTGAGATTCGTCCTGTGAA 338
Query 356 GGTTATGGCTTCTGTTTCCACGGCGGAGAAAGCGTCGGAGATTGTGCTTCAACCCATTAG 415
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 339 GGTTAGGGCTTCTGTTTCCACGGCGGAGAAAGCTTCGGAGATTGTGCTTCAACCCATTAG 398
Query 416 AGAAATTTCGGGTCTTATTAAGCTCCCTGGCTCCAAGTCTCTGTCTAATCGGATCCTGCT 475
|||||| |||||||| |||||||| ||||||||||||||||| |||||||| || |||||
Sbjct 399 AGAAATCTCGGGTCTCATTAAGCTTCCTGGCTCCAAGTCTCTCTCTAATCGAATTCTGCT 458
Query 476 TCTCGCTGCTCTATCTGAGGGAACTACTGTAGTGGACAACTTGTTGAACAGTGATGACAT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 TCTCGCTGCTCTATCTGAGGGAACTACTGTAGTGGACAACTTGTTGAACAGTGATGACAT 518
Query 536 CAATTACATGCTTGATGCGTTGAAGAGATTGGGACTTAATGTGGAAACTGACAGTGAAAA 595
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 519 CAATTACATGCTTGATGCGTTGAAGATATTGGGACTTAATGTGGAAACTCACAGTGAAAA 578
Query 596 CAATCGTGCCGTAGTTGAAGGATGTGGCGGCATATTCCCAGCTTCCATTGATTCAAAGAG 655
||||||||| |||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct 579 CAATCGTGCTGTAGTTGAAGGATGTGGCGGGGTATTTCCAGCTTCCATTGATTCCAAGAG 638
Query 656 TGATATCGAACTTTACCTCGGTAATGCAGGAACAGCAATGCGTCCACTTACCGCTGCGGT 715
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 639 TGATATCGAACTTTACCTCGGCAATGCAGGAACAGCAATGCGTCCACTTACCGCCGCAGT 698
Query 716 TACTGCTGCAGGTGGAAATGCGAGTTATGTGCTTGATGGGGTGCCTCGGATGAGAGAAAG 775
||||||||||||||| || || |||||||| |||||||||||||||||||||||||| ||
Sbjct 699 TACTGCTGCAGGTGGCAACGCAAGTTATGTCCTTGATGGGGTGCCTCGGATGAGAGAGAG 758
Query 776 ACCTATAGGGGATTTGGTTGTTGGTCTTAAGCAGCTTGGTGCTGATGTTGAATGTACTCT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 ACCTATAGGGGATTTGGTTGTTGGTCTTAAGCAGCTTGGTGCTGATGTTGAATGTACTCT 818
Query 836 TGGAACTAACTGCCCTCCTGTTCGTGTCAACGCTAATGGTGGCCTTCCTGGTGGAAAGGT 895
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 TGGCACTAACTGCCCTCCTGTTCGTGTCAACGCTAATGGTGGCCTTCCTGGTGGAAAGGT 878
Query 896 GAAGCTTTCTGGATCAATTAGTAGTCAGTACTTGACTGCTTTGCTCATGGCAGCTCCCTT 955
||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 879 GAAGCTTTCTGGATCTATTAGTAGTCAGTACTTGACCGCTCTGCTCATGGCAGCTCCCTT 938
Query 956 AGCTCTTGGAGACGTCGAGATTGAGATAGTCGATAAATTGATTTCTGTTCCATATGTTGA 1015
|||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||
Sbjct 939 AGCTCTTGGAGACGTCGAAATTGAAATTGTCGATAAATTGATTTCTGTTCCGTATGTTGA 998
Query 1016 AATGACATTGAAGTTGATGGAACGTTTTGGGGTTAGTACCGAGCATAGTGATAGCTGGGA 1075
||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||
Sbjct 999 AATGACATTGAAGTTGATGGAACGTTTTGGGGTAAGTGCTGAGCATAGTGAAAGCTGGGA 1058
Query 1076 CCGTTTCTTTGTTAAGGGCGGGCAAAAATACAAGTCGCCTGGTAATGCGTACGTAGAAGG 1135
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 1059 TCGTTTCTTTGTTAAGGGTGGGCAAAAATACAAGTCGCCGGGTAATGCTTACGTAGAAGG 1118
Query 1136 TGATGCTTCTAGTGCTAGTTATTTCTTGGCTGGTGCTGCCATTACCGGTGAAACTGTCAC 1195
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1119 TGATGCTTCTAGTGCTAGTTATTTCCTGGCTGGTGCTGCCATTACCGGTGAAACTGTCAC 1178
Query 1196 TGTTGAAGGTTGTGGAACTACCAGCTTGCAGGGAGATGTAAAATTCGCCGAGGTCCTTGA 1255
|||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| |||||
Sbjct 1179 TGTTGAAGGTTGTGGAACGACCAGTTTGCAGGGAGATGTGAAATTTGCCGAGGTTCTTGA 1238
Query 1256 GAAAATGGGATGTAAAGTGTCCTGGACAGAGAACAGTGTGACTGTGACAGGACCACCTAG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1239 GAAAATGGGATGTAAAGTGTCCTGGACAGAGAACAGTGTGACTGTGACAGGGCCGTCTAG 1298
Query 1316 AGATGCTTTTGGAATGAGACACTTGCGCGCTATTGATGTCAACATGAACAAAATGCCTGA 1375
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1299 AGATGCTTTTGGAATGAGACACTTGCGGGCTATTGATGTCAACATGAACAAAATGCCTGA 1358
Query 1376 TGTAGCCATGACTCTTGCCGTCGTTGCTCTCTTTGCTGACGGTCCAACTACCATTAGAGA 1435
|||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1359 TGTAGCAATGACTCTTGCCGTCGTTGCTCTCTTTGCCGATGGTCCAACCACCATTAGAGA 1418
Query 1436 TGTGGCTAGCTGGAGAGTAAAGGAGACAGAAAGGATGATTGCCATTTGCACAGAGCTTAG 1495
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1419 TGTGGCTAGCTGGAGAGTAAAGGAGACGGAAAGGATGATTGCCATTTGCACAGAGCTTAG 1478
Query 1496 AAAGCTGGGAGCTACAGTGGAAGAAGGTTCAGATTATTGTGTGATAACACCACCAAAAAA 1555
||| ||||||||||||||||||||||||||||||||||||||||| || || || |||||
Sbjct 1479 AAAACTGGGAGCTACAGTGGAAGAAGGTTCAGATTATTGTGTGATTACTCCGCCGAAAAA 1538
Query 1556 GGTGAAACCGGCAGAGATTGATACATATGATGATCATAGAATGGCAATGGCATTCTCTCT 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 GGTGAAACCGGCAGAGATTGATACATATGATGATCATAGAATGGCAATGGCATTCTCTCT 1598
Query 1616 TGCAGCTTGTGCTGATGTTCCAATCACCATCAATGATCCCGGTTGCACCAGGAAAACCTT 1675
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1599 TGCAGCTTGTGCTGATGTTCCAATCACCATCAATGACCCCGGTTGCACCAGGAAAACCTT 1658
Query 1676 CCCCGACTACTTCCAAGTCCTTGAAAGAATCACAAAGCACTAAACAAAAAA-CT-T---- 1729
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 1659 CCCCGACTACTTCCAAGTCCTTGAAAGAATCACAAAGCATTAAACAAAAAAACTCTAAAA 1718
Query 1730 -CTG---TGtttttttttCTGATCCAAGCTTATCTGTTTCCATATTTCTTGCCTCTGTAA 1785
|| |||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1719 TCTCCACTGTTTTTTCTTCTGATCCAAGCTTATCTGTTTCCATTTTTCTTGTCTCTGTAA 1778
Query 1786 CATT 1789
||||
Sbjct 1779 CATT 1782
Score = 63.9 bits (34), Expect = 5e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1789 TTTGCGTGTAACTGAACTGAGTGAGATTTGAGATGCAATTATT 1831
|||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 1807 TTTGTGTGTACCTGAACTGAGTGAGATTTGAGATGCAATCATT 1849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90611983725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5