BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483669
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45330.1 | Symbols: emb1067 | RNA 2'-phosphotransferase, Tpt... 1513 0.0
AT5G23600.1 | Symbols: | RNA 2'-phosphotransferase, Tpt1 / Kpt... 987 0.0
> AT2G45330.1 | Symbols: emb1067 | RNA 2'-phosphotransferase, Tpt1
/ KptA family | chr2:18686336-18688035 FORWARD LENGTH=1035
Length=1035
Score = 1513 bits (819), Expect = 0.0
Identities = 954/1016 (94%), Gaps = 21/1016 (2%)
Strand=Plus/Plus
Query 40 cgtctctgtcgtcttcgtctt-c-c-aactctgACTTTGAGCAGCTCTGTCTTCTTCTCG 96
||||||||||||| ||| ||| | | ||||||||||||||||||||||||||||||||
Sbjct 14 CGTCTCTGTCGTCATCGACTTCCTCTTCCTCTGACTTTGAGCAGCTCTGTCTTCTTCTCG 73
Query 97 AAATCGTCTCCTG--T-TTCTGCTTTCATGGAAGCTTCAAATCCCAATTCTTCTAGAAAA 153
||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 74 AAATCGTCTCCTGTTTCTTCTGCTTTCATGGATGCTTCAAATCCCAATTCTTCTAGAAAA 133
Query 154 TCCAATTTCTCTTCCTTCGCTCAGTCCAGTCG-A--------AGAGGAGGAGGCTATGAG 204
|| ||| ||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 134 TCTAATGTCTCTTCCTTCGCTCAGTCCAGTCGAAGCGGTGGTAGAGGAGGAGGATATGAG 193
Query 205 AGAGATAACGATCGACGGAGACCTCAGGGACGT-G-G-CGGCGGAGGCGGAAAAGATAGA 261
||||||||||||||||||||||||||||| ||| | | ||| ||||||||||| ||||||
Sbjct 194 AGAGATAACGATCGACGGAGACCTCAGGGTCGTGGCGACGGTGGAGGCGGAAAGGATAGA 253
Query 262 ATCGATGCCCTTGGAAGACTCTTGACGAGAATATTGCGACACATGGCTACTGAGCTGAGA 321
|||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 254 ATCGATGCACTTGGACGACTCTTGACGAGAATATTGCGACATATGGCTACTGAGCTGAGA 313
Query 322 TTGAACATGCGAGGTGATGGTTTTGTTAAAGTTGAAGATTTACTTAACCTGAATTTGAAA 381
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 TTGAACATGAGAGGTGATGGTTTTGTTAAAGTTGAAGATTTACTTAACCTGAATTTGAAA 373
Query 382 ACTTCTGCAAATATTCAATTGAAGTCACACACGATTGATGAAATTAGAGAGGCTGTGAGA 441
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 374 ACTTCTGCAAATATTCAGTTAAAGTCACACACGATTGATGAAATTAGAGAGGCTGTGAGA 433
Query 442 AGGGACAATAAACAACGGTTTAGCCTCATCGATGAGAATGGAGAGCTCTTGATTCGCGCT 501
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 434 AGGGACAATAAGCAACGGTTTAGTCTCATCGATGAGAATGGAGAGCTCTTGATTCGCGCT 493
Query 502 AACCAAGGCCACTCGATCACGACGGTTGAGTCAGAAAAGTTACTTAAACCAATACTGTCA 561
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 494 AACCAAGGCCATTCGATCACGACGGTTGAGTCAGAGAAGTTACTTAAACCAATACTGTCA 553
Query 562 CCAGAAGAAGTTCCAGTGTGTGTACATGGAACTTATAGGAAGAATTTGGAATCCATCTTA 621
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 CCAGAAGAAGCTCCAGTGTGTGTACATGGAACTTATAGGAAGAATTTGGAATCCATCTTA 613
Query 622 GCATCGGGCTTAAAGCGCATGAATAGAATGCATGTTCACTTCTCTTGTGGATTACCAACA 681
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GCATCGGGCTTAAAGCGTATGAATAGAATGCATGTTCACTTCTCTTGTGGATTACCAACA 673
Query 682 GATGGTGAAGTGATTAGTGGCATGAGAAGGAATGTAAATGTTATCATCTTCCTCGACGTC 741
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 674 GATGGTGAAGTGATTAGTGGCATGAGAAGAAATGTAAATGTTATCATCTTCCTCGACATC 733
Query 742 AAGAAAGCTCTTGCAGATGGGATTGCGTTCTACATTTCAGACAACAAAGTGATTTTGACT 801
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 734 AAGAAAGCTCTTGAAGATGGGATTGCGTTCTACATATCAGACAACAAAGTGATTTTGACT 793
Query 802 GAAGGCATTGATGGAGTAGTGCCGGTCGATTACTTCCAGAAGATCGAGTCTTGGCCTGAT 861
|||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 794 GAAGGCATTGATGGTGTATTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGGCCTGAT 853
Query 862 CGGCAATCCATACCTTTCTGATTCATGTAATTCAACATCATGCGAAGATTCACAGGATTC 921
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
Sbjct 854 CGGCAATCCATACCTTTCTGATTCATATAATTCAACATCATGCGAAGATTGACAGGATCC 913
Query 922 TATGACAATGATTGTGACGATTCTTGGTGAACCTTGATTATGTAATG--GTCTCACTGTC 979
||||||||||||||||| ||||||| |||||||||||||||||||| |||||| |||
Sbjct 914 TATGACAATGATTGTGAGGATTCTTC-TGAACCTTGATTATGTAATGTTGTCTCAGTGTT 972
Query 980 TTCAATTGCACATATGCCAGTTTATGGAAACTTTCAAGATTATGTTGTTTCCGTTG 1035
|||||||||||||||| || |||||| ||||||||||||||||||||||||| |||
Sbjct 973 TTCAATTGCACATATGACAATTTATGAAAACTTTCAAGATTATGTTGTTTCCTTTG 1028
> AT5G23600.1 | Symbols: | RNA 2'-phosphotransferase, Tpt1 / KptA
family | chr5:7955994-7956632 FORWARD LENGTH=639
Length=639
Score = 987 bits (534), Expect = 0.0
Identities = 596/627 (95%), Gaps = 0/627 (0%)
Strand=Plus/Plus
Query 256 GATAGAATCGATGCCCTTGGAAGACTCTTGACGAGAATATTGCGACACATGGCTACTGAG 315
||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||
Sbjct 13 GATAGAATCGATGCCCTTGGACGAATCTTGACGAGAATATTGCGACATATGGCTACTGAG 72
Query 316 CTGAGATTGAACATGCGAGGTGATGGTTTTGTTAAAGTTGAAGATTTACTTAACCTGAAT 375
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 73 CTGAGATTGAACATGAGAGGTGATGGTTTTGTTAAAGTTGAAGATTTACTCAACCTGAAT 132
Query 376 TTGAAAACTTCTGCAAATATTCAATTGAAGTCACACACGATTGATGAAATTAGAGAGGCT 435
|||||||||| |||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 133 TTGAAAACTTGTGCAAATATTCAGTTAAATTCACACACGATTGATGAAATTAGAGAGGCT 192
Query 436 GTGAGAAGGGACAATAAACAACGGTTTAGCCTCATCGATGAGAATGGAGAGCTCTTGATT 495
|||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 193 GTGACAAGGGACAATAAAAAACGGTTTAGCCTCATCGATGAGGATGGAGAGCTCTTGATT 252
Query 496 CGCGCTAACCAAGGCCACTCGATCACGACGGTTGAGTCAGAAAAGTTACTTAAACCAATA 555
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 253 CGCGCTAATCAAGGCCACTCAATCACGACGGTTGAGTCAGAGAAGTTACTTAAACCAATA 312
Query 556 CTGTCACCAGAAGAAGTTCCAGTGTGTGTACATGGAACTTATAGGAAGAATTTGGAATCC 615
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 313 TTGTCACCAGAAGAAGCTCCAGTGTGTGTACATGGAACTTATAGGAAGAATTTAGAATCC 372
Query 616 ATCTTAGCATCGGGCTTAAAGCGCATGAATAGAATGCATGTTCACTTCTCTTGTGGATTA 675
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 373 ATCTTAGCATCGGGCTTAAAGCGTATGAATAGAATGCATGTTCACTTCTCTTGTGGATTA 432
Query 676 CCAACAGATGGTGAAGTGATTAGTGGCATGAGAAGGAATGTAAATGTTATCATCTTCCTC 735
|| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 433 CCTACAGATGGTGAAGTGATTAGTGGCGTGAGAAGAAATGTAAATGTTATCATCTTCCTC 492
Query 736 GACGTCAAGAAAGCTCTTGCAGATGGGATTGCGTTCTACATTTCAGACAACAAAGTGATT 795
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CACATCAAGAAAGCTCTTGAAGATGGGATTGCGTTCTACATTTCAGACAACAAAGTGATT 552
Query 796 TTGACTGAAGGCATTGATGGAGTAGTGCCGGTCGATTACTTCCAGAAGATCGAGTCTTGG 855
|||||| ||||||||| ||| || |||| ||||||||||||||||||||||||||||||
Sbjct 553 TTGACTCAAGGCATTGTTGGTGTCTTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGG 612
Query 856 CCTGATCGGCAATCCATACCTTTCTGA 882
|||||||||||||||||||||||||||
Sbjct 613 CCTGATCGGCAATCCATACCTTTCTGA 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5