BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483673
Length=788
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45360.1 | Symbols: | Protein of unknown function (DUF1442)... 1077 0.0
AT3G60780.1 | Symbols: | Protein of unknown function (DUF1442)... 438 3e-122
> AT2G45360.1 | Symbols: | Protein of unknown function (DUF1442)
| chr2:18698592-18699514 FORWARD LENGTH=829
Length=829
Score = 1077 bits (583), Expect = 0.0
Identities = 687/734 (94%), Gaps = 20/734 (3%)
Strand=Plus/Plus
Query 1 ATCATCAAACTCCATTTCACTTTCACTATGAAGCTTGTCTGGTCGCCGGAAACTGCTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCATCAAACTCCATTTCACTTTCACTATGAAGCTTGTCTGGTCGCCGGAAACTGCTTCT 60
Query 61 GACGCCTACATCGACACCGTTAAATCGTGTAAGAGCTACAAAGAATCAGGAGTGGCGGAG 120
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 61 GACGCCTACATCGACACCGTTAAATCGTGTAAGAGCGACAAAGAGTCAGGAGTGGCAGAA 120
Query 121 TTTTTATCAGCTACGGCGGCTGGATGGAACGCGAGGCTGATCGTTGAGACATGGTCACGC 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTTATCAGCTACAGCGGCTGGATGGAACGCGAGGCTGATCGTTGAGACATGGTCACGC 180
Query 181 GGCGATCCAATCGCGACTAGCGTCGGACTCGCGGTTGCTGCAACTCACACGTGCGGAAGA 240
|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 181 GGCGATCCAATCACGACTAGCGTCGGACTCGCGGTTGCTGCAACTCACACGGGTGGAAGA 240
Query 241 CACGTGTGTATAGTACCTGACGAGCAATCTAAACTTGAGTACGTGTTGGCCATGAGAGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CACGTGTGTATAGTACCTGACGAGCAATCTAAACTTGAGTACGTGTTGGCCATGAGAGGA 300
Query 301 GTCGTTACGACGGAGACGACGGAGGTTGTGGTGGTCGGAGAATCTGTTGAGAACACGATG 360
| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 301 TTTGTTACGACGGAG--G-------TTGTGGTGGTCGGAGAATCTGTTGAGAACACGATG 351
Query 361 GAGGAGTTTCCCGGTGTGGATTTCTTGGTGGTGGACTCGAAACGGCGAGATTTCGTTAGA 420
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 352 GAGGAGTTTCCCGGTGTGGATTTCTTGGTGGTGGACTCGAAGCGGCGAGAGTTCGTCAGA 411
Query 421 ACGCTAAGGTTTGCGAAACTGAGCAACAAGGGTGCCGTTTTGGTGTGTAAAAACGCCACG 480
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 412 ACGCTGAGGTTTGCGAAGCTGAGCAACAAGGGTGCCGTTTTGGTGTGTAAAAACGCCATG 471
Query 481 CATAGAGCAATCTCTGGGTTTAAATGGCACGATGTGTTGAAAGGAGGGACACGTGTAGTT 540
||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| ||
Sbjct 472 CATAGAGCAATCTCTGGTTTTAAATGGCACGATGTGTTGAAAAGAGGAACACGTGTGGTG 531
Query 541 AGATCCGTGTTTTTACCGGTTGGGAGTGGGTTGGATATCGTACACGTGGGAGCTACTGGT 600
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 532 AGATCCGTGTTTTTACCGGTTGGTAGTGGGTTGGATATTGTACACGTGGGAGCTACTGGT 591
Query 601 GGCCACCAACGTGATGACTCGAGGA-TGCTTCGTAGCCGTTGGATTAGACACGTGGATCA 659
| ||| |||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 592 --C-------GTGGGGACTCGAGGAAT-CTTCGTAGCCGTTGGATTAGACACGTGGATCA 641
Query 660 TCTATCGGGAGAGGAGCATTTGTTCAGACGCTAAatttggatttccttttttaccctttt 719
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 642 TCTGTCGGGAGAGGAGCATTTGTTCAGACGCTAAATTTGGATTTCCTCTTTTACCCTTTT 701
Query 720 tccaccacttcatt 733
||||||||||||||
Sbjct 702 TCCACCACTTCATT 715
> AT3G60780.1 | Symbols: | Protein of unknown function (DUF1442)
| chr3:22462657-22463785 FORWARD LENGTH=850
Length=850
Score = 438 bits (237), Expect = 3e-122
Identities = 530/668 (79%), Gaps = 33/668 (5%)
Strand=Plus/Plus
Query 28 ATGAAGCTTGTCTGGTCGCCGGAAACTGCTTCTGACGCCTACATCGACACCGTTAAATCG 87
|||| ||| |||||||||||||||||||| ||| |||| |||||| ||||||||| |||
Sbjct 39 ATGAGGCTCGTCTGGTCGCCGGAAACTGCCTCTAACGCTTACATCCACACCGTTAGATCA 98
Query 88 TGTAAGAGCTACAAAGAATCAG-GAGTGGCGGAGTTTTTATCAGCTACGGCGGCTGGATG 146
||||| ||||||| ||| || | | ||||||||||||||||| ||||||||||| |||||
Sbjct 99 TGTAAAAGCTACAGAGACTC-GAGCGTGGCGGAGTTTTTATCGGCTACGGCGGCGGGATG 157
Query 147 GAACGCGAGGCTGATCGTTGAGACATGGTCACGCGGCGATCCAATCGCGACTAGCGTCGG 206
|||| ||||||||||||||||||| |||||||| || ||||| ||||| |||||||||||
Sbjct 158 GAACACGAGGCTGATCGTTGAGACTTGGTCACGTGGAGATCCGATCGCAACTAGCGTCGG 217
Query 207 ACTCGCGGTTGCTGCAACT-CACACGTGCGGAAGACACGTGTGTATAGTACCTGACG-AG 264
|||||| || || || | | ||||| || |||||||||||||| ||||| ||||||| ||
Sbjct 218 ACTCGCCGTGGCAGCGA-TACACACATGTGGAAGACACGTGTGCATAGTTCCTGACGAAG 276
Query 265 CAATCTAAACT-TGAGTACGTGTTGGCCATGAGAGGAGTCGTTACGACG-GAGACGACGG 322
| || | | ||||||| | || |||||||||| |||||||| | || | ||||
Sbjct 277 -AGTC-GAGGTCGGAGTACGAGGCGGTGATGAGAGGAGCCGTTACGA-GTGACTCAACGG 333
Query 323 AGGTTGTGGTGGTCGGAGAATCTGTTGAGAACACGATGGAGGAGTTTC-CCGGTGTGGAT 381
||| | | ||||| ||| || | ||| || | |||| ||| || |||| ||||||
Sbjct 334 AGG-T-T-ATGGTCTTAGACTCGGCGGAGGACGTGGTGGA-GAGAATCTCCGGCGTGGAT 389
Query 382 TTCTTGGTGGTGGACTCGAAACGGCGA-GATTTCGTTAGAACGC-TAAGG-TTTGCG-AA 437
||| ||||||| || ||||||| || | || |||| || ||||| | || || ||| ||
Sbjct 390 TTCATGGTGGTTGATTCGAAAC-GCCACGAGTTCG-TA-AACGCGTTGGGATTAGCGAAA 446
Query 438 ACTGAGCAACAA-GGGTGCCGTTTTGGTGTGTAAAAACGCCACGCAT-AGAGCAATCTCT 495
|| |||||| || ||| |||||||||||||||||||||||||||| | | | | ||| ||
Sbjct 447 AC-GAGCAA-AATGGGCGCCGTTTTGGTGTGTAAAAACGCCACGC-TGAAATCTATCCCT 503
Query 496 GGGTTTAAATGGCACGATGTGTTGAAAGGAGGGACACGTGTAGTTAGATCCGTGTTTTTA 555
|||||||||||||| | | | |||| | |||| |||||||| || ||||| ||||| |||
Sbjct 504 GGGTTTAAATGGCAAGGTCTTTTGAGACGAGGTACACGTGTCGTGAGATCGGTGTTCTTA 563
Query 556 CCGGTTGGGAGTGGGTTGGATATCGTACACGTGGGAGCTACTGGTGGCCACCAACGTGAT 615
|| || ||||| || || || ||||||||||||||||| | |||||| || | | |
Sbjct 564 CCCGTCGGGAGAGGATTAGAGATCGTACACGTGGGAGCCAGTGGTGGTGGT-AATG-GTT 621
Query 616 GACTCGAGGATGCTTCGTAGCCGTTGGATTAGACACGTGGATCATCTATCGGGAGAGGAG 675
| ||||| | ||| |||||||||||||| |||| | |||| || ||| ||||||||
Sbjct 622 ---T-GAGGAAGATTCCTAGCCGTTGGATTAAACACATAGATCCTCGATCTGGAGAGGAA 677
Query 676 CATTTGTT 683
|| |||||
Sbjct 678 CACTTGTT 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38328654161
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5