BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483674

Length=1231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G45380.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   922    0.0  
  AT2G45360.1 | Symbols:  | Protein of unknown function (DUF1442)...  63.9    3e-09


> AT2G45380.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
cellular_component unknown; EXPRESSED IN: inflorescence meristem, 
flower, cultured cell; EXPRESSED DURING: petal differentiation 
and expansion stage; BEST Arabidopsis thaliana protein 
match is: Calcium-binding EF-hand family protein (TAIR:AT4G34070.1); 
Has 171 Blast hits to 170 proteins in 31 species: 
Archae - 2; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants 
- 94; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 
| chr2:18699428-18703093 REVERSE LENGTH=1645
Length=1645

 Score =  922 bits (499),  Expect = 0.0
 Identities = 598/645 (93%), Gaps = 10/645 (2%)
 Strand=Plus/Plus

Query  571   GCTGAGAGGAAGATTCAGAATGTGAATCAAAGGAGTGATTTTAACCGAAGAGAGGGTACG  630
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  961   GCTGAGAGGAAGATTCAGAATGTGAATCAAAGGAGTGATTTTAACCGAAGAGAGGGTACA  1020

Query  631   CAGTCTCGAGCTAACACATTCAGACATCACATCTCTAAGGTTACATATGGTGGCATAGAT  690
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1021  CAGTCTCGAGCTAACACATTCAGACATCACATCTCTAAGGTTACATATGGTGGCATACAT  1080

Query  691   GGTGCTTACTATACATCCACTAGAACCAGAAGAAAAGGCAGTGATGGAATGGTGGTAGAG  750
             ||||| ||||||||||| ||||||||||||||||||| | |||||||||||||||| |||
Sbjct  1081  GGTGCGTACTATACATCTACTAGAACCAGAAGAAAAGACGGTGATGGAATGGTGGTTGAG  1140

Query  751   GAAAGCAAAGAAGCCGATAAGACTACCGGTGAAGCCACTCATAGGATCTCCAGAGGAATC  810
             |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1141  GAAAGCAAAGAAGCTGATAAGACTACCGGTGAAGCCACTCATAGGATCTCAAGAGGAATC  1200

Query  811   AATGATAAGGGTCATTCAGTTACTAGGAAGCTTAACTCAAGTGGTGGTATAGAGTCAACA  870
             |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||
Sbjct  1201  AATGATAAGGGTCATTCAGTTACTAGGAAGCTCAACTCAAGTGGTGGTGTAGAGTCGACA  1260

Query  871   CAGACTCTTCACAACCTTGATAAAGACGAATTAAGTAGCTTTGAGGAAGCATGGAAAGAC  930
             ||||||||||||||||| ||| |||| ||||||||| ||||||| ||||||||||||| |
Sbjct  1261  CAGACTCTTCACAACCTCGATGAAGATGAATTAAGTGGCTTTGAAGAAGCATGGAAAGGC  1320

Query  931   AATTTATCTCTTGCCAAACAAGAATTCACTGGCTCTGATCATAGTTTTGGTGGGTGGCTT  990
             |||| |||||||| ||| || |||||||||||||||||| |||||||||| |||||| | 
Sbjct  1321  AATTCATCTCTTGGCAAGCATGAATTCACTGGCTCTGATAATAGTTTTGGAGGGTGGGTA  1380

Query  991   CTTCCAGCTCTTGACCAAAGTGGTCGCCAAACAGACCAAAGTCAGACTGGTTCGAGCCGA  1050
             |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct  1381  CTTCCATCTCTTGACCAAATTCGTCGCCAAACAGACCAAAGTCAGACTGGTTCGAGCCGA  1440

Query  1051  TCTGCAACTAGAGCTAAGAAGGTTGTTCGAATCAACATTGAATGAATCATCAGAAAACCA  1110
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1441  TCTGCAACTGGAGCTAAGAAGGTTGTTCGAATCAACATTGAATGAATCATCAGAAAACCA  1500

Query  1111  TGTATCAATCTATGTG--TGTAAATCTAATAATGTTGCAGATGCATCTTTGAAGTTGCA-  1167
             | ||||||||||||||  |||||||| |||||| ||| || ||  | |||||||||| | 
Sbjct  1501  TATATCAATCTATGTGCGTGTAAATCAAATAATTTTGTAGTTG--T-TTTGAAGTTGTAG  1557

Query  1168  -A-T-GTCAATAATTTTACATTCGTGTAAAAACACAACATACATA  1209
              | | | ||||| ||||||||||||||||||||||||||||||||
Sbjct  1558  TAATTGGCAATA-TTTTACATTCGTGTAAAAACACAACATACATA  1601


 Score = 87.9 bits (47),  Expect = 2e-16
 Identities = 49/50 (98%), Gaps = 0/50 (0%)
 Strand=Plus/Plus

Query  287  AGAGTACTCTGTCTCTGGAATTTCTGGGTTCTTCTCGGATTCTCTCAAAG  336
            ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  578  AGAGTACTCTGCCTCTGGAATTTCTGGGTTCTTCTCGGATTCTCTCAAAG  627


> AT2G45360.1 | Symbols:  | Protein of unknown function (DUF1442) 
| chr2:18698592-18699514 FORWARD LENGTH=829
Length=829

 Score = 63.9 bits (34),  Expect = 3e-09
 Identities = 37/38 (97%), Gaps = 1/38 (3%)
 Strand=Plus/Minus

Query  1172  CAATAATTTTACATTCGTGTAAAAACACAACATACATA  1209
             |||| |||||||||||||||||||||||||||||||||
Sbjct  823   CAAT-ATTTTACATTCGTGTAAAAACACAACATACATA  787



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 60491656725


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5