BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483677
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45420.1 | Symbols: LBD18 | LOB domain-containing protein 18... 1515 0.0
> AT2G45420.1 | Symbols: LBD18 | LOB domain-containing protein
18 | chr2:18718348-18720729 FORWARD LENGTH=1326
Length=1326
Score = 1515 bits (820), Expect = 0.0
Identities = 962/1026 (94%), Gaps = 27/1026 (3%)
Strand=Plus/Plus
Query 180 GGGAGATAGAGTAACAACTCGTTAATTGTGGGGTGGCCGGTCATGAGCGGTGGTGGGAAC 239
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 212 GGGAGATAGAGTAACAACTCGTTAATTGGGGGGTGGCCGGTCATGAGCGGTGGTGGGAAC 271
Query 240 ACAGTCACTGCCGTGGGAGGCGGAGGTGGTGGTTGTGGTGGAGGAGGCAGCACTgggggg 299
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 272 ACAATCACTGCCGTGGGAGGCGGAGGTGGTGGTTGTGGTGGAGGAGGCAGCAGTGGGGGA 331
Query 300 ggAGGAAGTAGTGGCGGTGGTGGTGGTGGGCCATGTGGTGCTTGTAAGTTTCTAAGGAGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 GGAGGAAGTAGTGGCGGTGGTGGTGGTGGGCCATGTGGTGCTTGTAAGTTTCTAAGGAGG 391
Query 360 AAGTGTGTGCCGGGATGTATATTTGCACCGTACTTTGACTCCGAGCAAGGCTCGGCTTAT 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 392 AAGTGTGTGCCGGGATGTATATTTGCACCGTACTTTGACTCCGAGCAAGGATCGGCTTAT 451
Query 420 TTTGCGGCGGTGCATAAAGTGTTCGGAGCCAGTAACGTCTCGAAGCTTCTCTTACACATA 479
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 452 TTTGCGGCGGTGCATAAAGTGTTCGGAGCCAGTAACGTCTCGAAGCTTCTATTACACATA 511
Query 480 CCGGTTCATCGAAGGTCCGATGCTGTCGTAACAATTTGCTATGAAGCTCAGGCTAGGATA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 CCGGTTCATCGAAGGTCCGATGCTGTCGTAACAATTTGCTATGAAGCTCAGGCTAGGATA 571
Query 540 AGGGATCCTATCTATGGTTGCGTCGCTCACATCTTTGCTCTTCAGCAACAGGTGGTGAAT 599
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 AGGGATCCTATCTACGGTTGCGTCGCTCACATCTTTGCTCTTCAGCAACAGGTGGTGAAT 631
Query 600 CTACAGGCAGAAGTTTCTTACTTACAAGCCCATTTGGCATCACTAGAGCTACCTCAACCG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 CTACAGGCAGAAGTTTCTTACTTACAAGCCCATTTGGCATCACTAGAGCTACCTCAACCG 691
Query 660 CAAACGCGGCCACAGCCTATGCCGCAACCGCT-C---T-TTTTT-ACTCCTCCTCCGCCT 713
||||||||||||||||||||||||||||||| | | ||||| ||||||||||| |||
Sbjct 692 CAAACGCGGCCACAGCCTATGCCGCAACCGCAACCGCTCTTTTTCACTCCTCCTCCCCCT 751
Query 714 CTTGCCATAACTGATTTACCTGCATCAGTCTCACCCTTACCCTCAACTTACGATCTAGCA 773
||||||||||| |||||||||||||||||||||||||| |||||||| || || ||||||
Sbjct 752 CTTGCCATAACCGATTTACCTGCATCAGTCTCACCCTTGCCCTCAACCTATGACCTAGCA 811
Query 774 TCCATCTTCGATCAAACGACGTCTTCTTCGGCGTGGGCCACGCAACAACGAAGATTCATT 833
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 812 TCCATCTTCGATCAAACGACGTCTTCTTCGGCATGGGCCACGCAACAACGAAGATTCATT 871
Query 834 GATCCACGTCACCAACACGGTGTATCATCGTCGTCTTCTTCTGTCGCCGCGGGGCTCGGT 893
||||||||||||||| |||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 872 GATCCACGTCACCAATACGGTGTATCATCGTCTTCCTCTTCTGTCGCCGTGGGGCTCGGT 931
Query 894 GGTGGAAACAGTCAGGACCTTCAAGCATTAGCACATGAACTCCTCCATAGACAAGGATCT 953
|||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 932 GGTGAAAACAGTCATGACCTCCAAGCATTAGCACATGAACTCCTCCATAGACAAGGATCT 991
Query 954 CCTCCACCGGCCGCTACAGACGATTCGCCGTCTCGAACTATGTCTAGATGAGTTGGTTTT 1013
||||| ||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 992 CCTCCCCCGGCAGCTACCGACCACTCGCCGTCTCGAACTATGTCTAGATGAGTTGGTTTT 1051
Query 1014 GATCAAATACATCTCCCCCTTTGTTATTAGGAAAATTAAATTACTACTCAATAAGGTTTA 1073
|||| | ||||||||| | || |||||||||||||||||||||| |||||||||| ||||
Sbjct 1052 GATCGA-TACATCTCCGCATT-GTTATTAGGAAAATTAAATTACAACTCAATAAGATTTA 1109
Query 1074 ATTTTCTTGGAATGTTGTAAGGAATATTGATTATAAATTTTCTAACATTTAAATTTGTAT 1133
|||||||| ||| | | || |||||||||||||||||||||||| ||| ||||
Sbjct 1110 ATTTTCTTTGAA------A-G---TACTGATTATAAATTTTCTAACATTTATATT-GTAT 1158
Query 1134 TACTACTGTATTTTCCCTTCGTTTT--CTGACGAGTATTT-CTT-CTT-T--GCCTTTAA 1186
||||||||||||||| |||| |||| ||||||||||||| ||| ||| | |||||||
Sbjct 1159 TACTACTGTATTTTCACTTC-TTTTGACTGACGAGTATTTTCTTTCTTCTTTGCCTTTAC 1217
Query 1187 TTTTTT 1192
||||||
Sbjct 1218 TTTTTT 1223
Score = 272 bits (147), Expect = 5e-72
Identities = 169/179 (94%), Gaps = 4/179 (2%)
Strand=Plus/Plus
Query 1 AAAGAGAAAATAGAGAGAGATCGTTTGTTTTTTGTTAGCTTTGTCGTCGCGTGGCTTTAA 60
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 4 AAAGAGAAAATAGAGAGAGATCGTTTTTTTTTTGTTAGCTTTGTCGTCGCTTGGCTTTAA 63
Query 61 AGACTTTTCTTCTCTGTACTCTCCTCTTACCAAACCCTAATTCTCCTCTCTTGATTCCCT 120
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 AGAC-TTTCTTCTCTATACTCTCCTCTTACCAAACCCTAATTCTCCTCTCTTGATTCCCG 122
Query 121 TTTCTCAAATCTTCCTCTCTTCTTCAAATTACAACACCAAACATAATCTCCATATTTTT 179
||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct 123 TTTCTCAAATCTTCCTCTCATCTTCAAA---CAATACCAAACATAATCTCCATATTTTT 178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60090052365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5