BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483681 Length=1495 Score E Sequences producing significant alignments: (Bits) Value AT2G45440.1 | Symbols: DHDPS2 | dihydrodipicolinate synthase | ... 2161 0.0 > AT2G45440.1 | Symbols: DHDPS2 | dihydrodipicolinate synthase | chr2:18730840-18733015 FORWARD LENGTH=1700 Length=1700 Score = 2161 bits (1170), Expect = 0.0 Identities = 1401/1507 (93%), Gaps = 38/1507 (3%) Strand=Plus/Plus Query 1 TCTCTCGCCGCTTTGTCTTTGTAACAAATCCACATCAATCCATCTTATCGGAATCTTTCC 60 |||||||||||||| || |||| |||||||| |||| || | | || |||||||||| || Sbjct 216 TCTCTCGCCGCTTTATCCTTGTTACAAATCC-CATCGAT-C-T-TT-TCGGAATCTTCCC 270 Query 61 TCATTATGCTCAGCCACCATTACCAGAGCTCCATTGTTTCAGTTCTCTTTTCAACGATTA 120 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 271 TCATTATGCTCAGCCACCATTACCAGAGCTCCATTGTTTCAGTTCTCCGTTCAACGATTA 330 Query 121 TCGGAAGTATT--C-ACACTATTAGTATCATCATCGTCGCCAACTGGTTTTGATTACCAG 177 |||||| |||| | ||||||||||||||| | |||||||||| | ||||||||||||| Sbjct 331 TCGGAATTATTCACAACACTATTAGTATCA-C--CGTCGCCAACCGATTTTGATTACCAG 387 Query 178 CTTCGGTGACGTTTTAATACACGACGGTCGTGATTAAGGAGGTTTTGGTAAATATCTT-- 235 ||| ||||||| || | ||||||||||||||||||||||||||| |||| Sbjct 388 CTTTGGTGACG---------AC-A--GTCGTGATTAAGGAGGTTTTGGTAAATTTCTTCG 435 Query 236 TT--TGGTATGTTTTCAAAGATGGCTGCTTTGAAAGGTTATGGATTGTGTTCTATGGACT 293 || | || |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 436 TTCCT-GTTTGTTTTCAAAGATGGCTGCTTTGAAAGGTTATGGCTTGTGTTCTATGGACT 494 Query 294 CTGCTCTACAATTCCCCTGTCCAAAGTTATCCAATGGCTACAAGAGAAGGAGCCCGAAAT 353 ||||||| |||||||||||||| ||| ||| |||| ||||||||||||||||| |||||| Sbjct 495 CTGCTCTTCAATTCCCCTGTCCTAAGCTATTCAATAGCTACAAGAGAAGGAGCTCGAAAT 554 Query 354 GGGTCTCTCCAAAAGCAGCTGTTGTGCCCAATTTTCATCTCCCAATGCGCAGCTTGGAGG 413 |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 555 GGGTCTCTCCCAAAGCAGCTGTTGTACCCAATTTCCATCTCCCAATGCGCAGCTTGGAGG 614 Query 414 TTAAAAACAGGACAAACACAGATGACATTAAAGCTCTACGTGTGATCACTGCTATCAAAA 473 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 615 TTAAAAACAGGACAAACACAGACGACATTAAAGCTCTACGTGTGATCACAGCTATCAAAA 674 Query 474 CACCGTATCTACCTGATGGAAGATTCGACCTTGAAGCCTACGATGACTTAGTGAACATTC 533 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 675 CACCGTATCTACCTGATGGAAGATTCGACCTTGAAGCCTACGATGACTTGGTCAACATTC 734 Query 534 AGATACAAAACGGCGCTGAAGGTGTCATTGTTGGGGGTACAACTGGTGAAGGACAATTGA 593 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 735 AGATACAAAACGGTGCTGAAGGTGTCATTGTTGGTGGTACAACTGGTGAAGGACAACTGA 794 Query 594 TGAGCTGGGACGAACACATTATGCTTATAGGCCATACCGTTAACTGTTTTGGCGGAAGCA 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 795 TGAGCTGGGACGAACACATTATGCTTATAGGCCATACCGTTAACTGTTTTGGCGGAAGCA 854 Query 654 TCAAAGTCATTGGAAACACTGGAAGCAATTCGACTAGAGAAGCAATCCACGCAACTGAAC 713 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 855 TCAAAGTCATTGGAAACACTGGAAGCAATTCGACTAGAGAAGCAATCCACGCGACTGAAC 914 Query 714 AAGGATTCGCTGTTGGAATGCACGCTGCTCTTCACATAAACCCTTACTATGGCAAGACTT 773 |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 915 AAGGATTCGCGGTTGGAATGCATGCTGCTCTTCATATAAACCCTTACTATGGCAAGACTT 974 Query 774 CGATTGAGGGTCTGATTGCACATTTCCAATCTGTTCTTCATATGGGACCGACGATTATAT 833 | |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 975 CTATTGAGGGACTGATTGCACATTTCCAGTCTGTTCTTCATATGGGACCGACGATTATAT 1034 Query 834 ACAATGTGCCTGGTCGAACAGGGCAAGATATACCGCCTCGTGCCATCTTCAAACTTTCTC 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1035 ACAATGTGCCTGGTCGAACAGGGCAAGATATACCGCCTCGTGCCATCTTCAAACTTTCTC 1094 Query 894 AGAATCCTAATTTAGCCGGTGTGAAGGAATGTGTTGGGAACAAGCGGGTCGAAGAGTACA 953 ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1095 AGAATCCGAATTTAGCTGGTGTGAAGGAATGTGTTGGGAACAAGCGAGTCGAAGAGTACA 1154 Query 954 CTGAGAATGGGGTTGTTGTGTGGAGTGGGAATGATGATGAGTGTCATGATTCAAGATGGG 1013 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1155 CTGAGAATGGGGTTGTTGTGTGGAGTGGGAATGATGATGAGTGTCATGATTCCAGATGGG 1214 Query 1014 ATTATGGAGCAACAGGAGTTATATCGGTTACTAGTAATTTAGTGCCAGGTTTGATGAGGA 1073 ||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| Sbjct 1215 ATTATGGAGCAACAGGAGTTATATCAGTTACTAGTAATTTAGTTCCGGGTTTGATGAGGA 1274 Query 1074 AATTGATGTTTGAAGGAAGGAATTCATCTTTGAACTCAAAGCTACTACCTTTAATGGCTT 1133 | |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1275 AGTTGATGTTTGAAGGTAGGAATTCATCTTTGAACTCAAAGCTTCTACCTTTGATGGCTT 1334 Query 1134 GGCTATTCCACGAGCCAAACCCGATTGGAATTAACACTGCTTTGGCTCAGCTTGGAGTGT 1193 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1335 GGCTGTTCCACGAGCCAAACCCGATTGGAATCAACACTGCTTTGGCTCAGCTTGGAGTTT 1394 Query 1194 CGAGGCCAGTTTTTAGGTTACCGTATGTACCATTGCCACTGTCTAAGAGGCTTGAGTTTG 1253 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1395 CGAGGCCGGTTTTTAGGTTACCATATGTACCATTGCCACTGTCTAAGAGGCTTGAGTTTG 1454 Query 1254 TGAAACTGGTGAAGGAGATTGGACGAGAGCATTTTGTTGGTGAGAAAGATGTTCAGGCTC 1313 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1455 TGAAACTGGTGAAGGAGATTGGACGAGAGCATTTTGTGGGTGAGAAAGATGTTCAGGCTC 1514 Query 1314 TTGATGACGATGATTTTATCCTTATTGGTCGATATTAGCATTACCtttttttttcgaatt 1373 ||||||| ||||||||||||||||| ||||||||||||||| || ||||||||| |||| Sbjct 1515 TTGATGATGATGATTTTATCCTTATCGGTCGATATTAGCAT-ACTTTTTTTTTTTTAATT 1573 Query 1374 tttggtttctttt-gtttGGTGTTAAAAAAGAAGAGACGGTTCTATACTTCTATCTGTTT 1432 ||||||| ||||| |||||||||||| ||||||||| |||||||| | | | | |||| Sbjct 1574 TTTGGTTCCTTTTTGTTTGGTGTTAATGAAGAAGAGATGGTTCTAT-CAT-T-TG-GTTT 1629 Query 1433 TATGTAGCTGATGAATGAA--AA--CTCACGGAATGATTTCATCATATTTCTTATCATGT 1488 ||||||||||||||||||| || |||| |||||||||||||||||||||||| | ||| Sbjct 1630 TATGTAGCTGATGAATGAATGAAAACTCAAGGAATGATTTCATCATATTTCTTAGCTTGT 1689 Query 1489 TTTGGTC 1495 ||||||| Sbjct 1690 TTTGGTC 1696 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73744600605 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5