BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483681
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45440.1 | Symbols: DHDPS2 | dihydrodipicolinate synthase | ... 2161 0.0
> AT2G45440.1 | Symbols: DHDPS2 | dihydrodipicolinate synthase
| chr2:18730840-18733015 FORWARD LENGTH=1700
Length=1700
Score = 2161 bits (1170), Expect = 0.0
Identities = 1401/1507 (93%), Gaps = 38/1507 (3%)
Strand=Plus/Plus
Query 1 TCTCTCGCCGCTTTGTCTTTGTAACAAATCCACATCAATCCATCTTATCGGAATCTTTCC 60
|||||||||||||| || |||| |||||||| |||| || | | || |||||||||| ||
Sbjct 216 TCTCTCGCCGCTTTATCCTTGTTACAAATCC-CATCGAT-C-T-TT-TCGGAATCTTCCC 270
Query 61 TCATTATGCTCAGCCACCATTACCAGAGCTCCATTGTTTCAGTTCTCTTTTCAACGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 271 TCATTATGCTCAGCCACCATTACCAGAGCTCCATTGTTTCAGTTCTCCGTTCAACGATTA 330
Query 121 TCGGAAGTATT--C-ACACTATTAGTATCATCATCGTCGCCAACTGGTTTTGATTACCAG 177
|||||| |||| | ||||||||||||||| | |||||||||| | |||||||||||||
Sbjct 331 TCGGAATTATTCACAACACTATTAGTATCA-C--CGTCGCCAACCGATTTTGATTACCAG 387
Query 178 CTTCGGTGACGTTTTAATACACGACGGTCGTGATTAAGGAGGTTTTGGTAAATATCTT-- 235
||| ||||||| || | ||||||||||||||||||||||||||| ||||
Sbjct 388 CTTTGGTGACG---------AC-A--GTCGTGATTAAGGAGGTTTTGGTAAATTTCTTCG 435
Query 236 TT--TGGTATGTTTTCAAAGATGGCTGCTTTGAAAGGTTATGGATTGTGTTCTATGGACT 293
|| | || |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 436 TTCCT-GTTTGTTTTCAAAGATGGCTGCTTTGAAAGGTTATGGCTTGTGTTCTATGGACT 494
Query 294 CTGCTCTACAATTCCCCTGTCCAAAGTTATCCAATGGCTACAAGAGAAGGAGCCCGAAAT 353
||||||| |||||||||||||| ||| ||| |||| ||||||||||||||||| ||||||
Sbjct 495 CTGCTCTTCAATTCCCCTGTCCTAAGCTATTCAATAGCTACAAGAGAAGGAGCTCGAAAT 554
Query 354 GGGTCTCTCCAAAAGCAGCTGTTGTGCCCAATTTTCATCTCCCAATGCGCAGCTTGGAGG 413
|||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 555 GGGTCTCTCCCAAAGCAGCTGTTGTACCCAATTTCCATCTCCCAATGCGCAGCTTGGAGG 614
Query 414 TTAAAAACAGGACAAACACAGATGACATTAAAGCTCTACGTGTGATCACTGCTATCAAAA 473
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 615 TTAAAAACAGGACAAACACAGACGACATTAAAGCTCTACGTGTGATCACAGCTATCAAAA 674
Query 474 CACCGTATCTACCTGATGGAAGATTCGACCTTGAAGCCTACGATGACTTAGTGAACATTC 533
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 675 CACCGTATCTACCTGATGGAAGATTCGACCTTGAAGCCTACGATGACTTGGTCAACATTC 734
Query 534 AGATACAAAACGGCGCTGAAGGTGTCATTGTTGGGGGTACAACTGGTGAAGGACAATTGA 593
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 735 AGATACAAAACGGTGCTGAAGGTGTCATTGTTGGTGGTACAACTGGTGAAGGACAACTGA 794
Query 594 TGAGCTGGGACGAACACATTATGCTTATAGGCCATACCGTTAACTGTTTTGGCGGAAGCA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TGAGCTGGGACGAACACATTATGCTTATAGGCCATACCGTTAACTGTTTTGGCGGAAGCA 854
Query 654 TCAAAGTCATTGGAAACACTGGAAGCAATTCGACTAGAGAAGCAATCCACGCAACTGAAC 713
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 855 TCAAAGTCATTGGAAACACTGGAAGCAATTCGACTAGAGAAGCAATCCACGCGACTGAAC 914
Query 714 AAGGATTCGCTGTTGGAATGCACGCTGCTCTTCACATAAACCCTTACTATGGCAAGACTT 773
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 915 AAGGATTCGCGGTTGGAATGCATGCTGCTCTTCATATAAACCCTTACTATGGCAAGACTT 974
Query 774 CGATTGAGGGTCTGATTGCACATTTCCAATCTGTTCTTCATATGGGACCGACGATTATAT 833
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 975 CTATTGAGGGACTGATTGCACATTTCCAGTCTGTTCTTCATATGGGACCGACGATTATAT 1034
Query 834 ACAATGTGCCTGGTCGAACAGGGCAAGATATACCGCCTCGTGCCATCTTCAAACTTTCTC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 ACAATGTGCCTGGTCGAACAGGGCAAGATATACCGCCTCGTGCCATCTTCAAACTTTCTC 1094
Query 894 AGAATCCTAATTTAGCCGGTGTGAAGGAATGTGTTGGGAACAAGCGGGTCGAAGAGTACA 953
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1095 AGAATCCGAATTTAGCTGGTGTGAAGGAATGTGTTGGGAACAAGCGAGTCGAAGAGTACA 1154
Query 954 CTGAGAATGGGGTTGTTGTGTGGAGTGGGAATGATGATGAGTGTCATGATTCAAGATGGG 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1155 CTGAGAATGGGGTTGTTGTGTGGAGTGGGAATGATGATGAGTGTCATGATTCCAGATGGG 1214
Query 1014 ATTATGGAGCAACAGGAGTTATATCGGTTACTAGTAATTTAGTGCCAGGTTTGATGAGGA 1073
||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1215 ATTATGGAGCAACAGGAGTTATATCAGTTACTAGTAATTTAGTTCCGGGTTTGATGAGGA 1274
Query 1074 AATTGATGTTTGAAGGAAGGAATTCATCTTTGAACTCAAAGCTACTACCTTTAATGGCTT 1133
| |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1275 AGTTGATGTTTGAAGGTAGGAATTCATCTTTGAACTCAAAGCTTCTACCTTTGATGGCTT 1334
Query 1134 GGCTATTCCACGAGCCAAACCCGATTGGAATTAACACTGCTTTGGCTCAGCTTGGAGTGT 1193
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1335 GGCTGTTCCACGAGCCAAACCCGATTGGAATCAACACTGCTTTGGCTCAGCTTGGAGTTT 1394
Query 1194 CGAGGCCAGTTTTTAGGTTACCGTATGTACCATTGCCACTGTCTAAGAGGCTTGAGTTTG 1253
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1395 CGAGGCCGGTTTTTAGGTTACCATATGTACCATTGCCACTGTCTAAGAGGCTTGAGTTTG 1454
Query 1254 TGAAACTGGTGAAGGAGATTGGACGAGAGCATTTTGTTGGTGAGAAAGATGTTCAGGCTC 1313
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1455 TGAAACTGGTGAAGGAGATTGGACGAGAGCATTTTGTGGGTGAGAAAGATGTTCAGGCTC 1514
Query 1314 TTGATGACGATGATTTTATCCTTATTGGTCGATATTAGCATTACCtttttttttcgaatt 1373
||||||| ||||||||||||||||| ||||||||||||||| || ||||||||| ||||
Sbjct 1515 TTGATGATGATGATTTTATCCTTATCGGTCGATATTAGCAT-ACTTTTTTTTTTTTAATT 1573
Query 1374 tttggtttctttt-gtttGGTGTTAAAAAAGAAGAGACGGTTCTATACTTCTATCTGTTT 1432
||||||| ||||| |||||||||||| ||||||||| |||||||| | | | | ||||
Sbjct 1574 TTTGGTTCCTTTTTGTTTGGTGTTAATGAAGAAGAGATGGTTCTAT-CAT-T-TG-GTTT 1629
Query 1433 TATGTAGCTGATGAATGAA--AA--CTCACGGAATGATTTCATCATATTTCTTATCATGT 1488
||||||||||||||||||| || |||| |||||||||||||||||||||||| | |||
Sbjct 1630 TATGTAGCTGATGAATGAATGAAAACTCAAGGAATGATTTCATCATATTTCTTAGCTTGT 1689
Query 1489 TTTGGTC 1495
|||||||
Sbjct 1690 TTTGGTC 1696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73744600605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5