BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483683
Length=2946
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45460.3 | Symbols: | SMAD/FHA domain-containing protein |... 4591 0.0
> AT2G45460.3 | Symbols: | SMAD/FHA domain-containing protein
| chr2:18736839-18741841 REVERSE LENGTH=3117
Length=3117
Score = 4591 bits (2486), Expect = 0.0
Identities = 2782/2924 (95%), Gaps = 23/2924 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCTACGGCGGCTGAACAAGACGAGAGAAAAATTGCATCGGTAGCATCGAACGCG 60
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 152 ATGGCGTCTACAGCGGCTGAACAAGACGAGAGAAAAATTGTATCGGTAGCATCGAACGCT 211
Query 61 AGCCAGGACATCAAAACGGCTGCTGCTGCATCGCGGATCAATAGCCAAAACGGCACTTCT 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 212 AGCCAGGACATCAAAACGGCTGCTGCTGCATCGCGGATCAGTAGCCAAAACGGCGCTTCT 271
Query 121 CCATCTCCATCGCTCAACTCCAAGGATTTCATCGTCTCCTCCGCAGCTAACATCGCTTCT 180
|||||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 272 CCATCTCCGTCGCTCAACTCCAAGGACTTCATCGTCTCAGCAGCAGCTAACATCGCTTCT 331
Query 181 CAGCCGTTACAGAACTACGATTCGAACGTTTGGGGAGTCCTCACCGCAATTTCAAGCAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 CAGCCGTTACAGAACTACGATTCGAACGTTTGGGGAGTCCTCACCGCAATTTCAAGCAAT 391
Query 241 GCTCGCAAACGCCGGCAGGGCATAAACATACTTTTGACTTCTGATGAGCACTGCTTAGGA 300
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 392 GCTCGCAAACGCCGGCAGGGCATAAATATACTTTTGACTTCTGATGAGCATTGCTTAGGA 451
Query 301 CGGCTTCCATGTCACGCCAGCTATCAGATAGAATCAAATGCAATAAGCGGGAATCATTGT 360
||||| ||||||||||| || |||||| |||||||||||||||| ||||||||||| |||
Sbjct 452 CGGCTGCCATGTCACGCTAGTTATCAGGTAGAATCAAATGCAATTAGCGGGAATCACTGT 511
Query 361 AAGGTATACCGTAAGCGGGTCACAGGCGGTGATGGGGATGATGTATCTGTCTTTGTGGTA 420
||||||| |||||||| ||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 512 AAGGTATTCCGTAAGCCGGTAACAGGCGGTGATGGGGATGATGTAACTGTCTTTATGGTA 571
Query 421 GACACAAGCACAAATGGTACGTTTCTCAATTGGGAGAGGTTAAAAAAGAACGGCCCTGAA 480
||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 572 GACACAAGCACAAATGGTACGTTTCTCAATTGGGAAAGGTTAACAAAGAATGGCCCTGAA 631
Query 481 GTCAGGGTTCAGCACGGTGACATCATATCGCTTGCTGTTCCTCCAGAGCATGAGAAGGCA 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GTCAGGGTTCAACACGGTGACATCATATCGCTTGCTGTTCCTCCAGAGCATGAGAAGGCA 691
Query 541 TTTGCATTTGTATACCGCGAAGTACTTGGTAATAATCCTGCACTTTCCTGCATGAACAGA 600
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 692 TTTGCATTTGTATACCGCGAAGTACTTGGTAATAATCCTGCGCTGTCCTGCATGAACAGA 751
Query 601 AAAAGAAAAGCAGAGGATACTACATGTGAAATTAAGAGGCAGAAGGGCATAGGGATTGGT 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 752 AAAAGAAAAGCAGAGGATACTACTTGTGAAATTAAGAGGCAGAAGGGCATAGGCATCAGT 811
Query 661 GGTCCCAATGGTCCAATATCTCTAGATGATTTTAAGAGCCTCCAGCGTTCAAACACAGAA 720
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 812 GGTCCCAATGGTCCAATATCTTTGGATGATTTTAAGAGCCTCCAGCGTTCAAACACAGAA 871
Query 721 CTGAGGAAGCAATTAGAAGCACAGGTGCTTACCATTGACACTCTGCGTAATGAGTCCCGC 780
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 872 CTGAGGAAGCAATTAGAAGCCCAGGTGCTTACCATTGACACTCTGCGTAATGAGTCCCGC 931
Query 781 TCAATTGTGGAGCACCATGAAAGTGATTATTTGAGTATCTTTACTGATATAACTTTGCAT 840
|||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 932 TCAATTGTTGAGCACCATGAAAGTGATTATTTGAGTATCTCTACTGAAATATCTTTGCAT 991
Query 841 TTGCAGGAAATAAAACAGATAAAAGAATCCACTGCAAAATCATTTCATAATGAACTGATT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 TTGCAGGAAATAAAACAGATAAAAGAATCCACTGCAAAATCATTTCATAATGAACTGATT 1051
Query 901 GAGCTGCGTGATCAATTAGATACTAAGCAGAAGGAACTGGCGCAGGTCAACAAATTATCA 960
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1052 GAGCTACGTGATCAATTAGATACGAAGCAGAAGGAACTGGCGCAGGTCAACAAATTATCA 1111
Query 961 GCTGAACAGAAGAATTCCATAGATGAACTTGGTGAGAGAGTAAGCGCTTCTTTGCAATCT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1112 GCTGAACAGAAGAATTCCATAGATGAACTTGGTGAGAGAGTAAGCGCTTCTTTGCAAACT 1171
Query 1021 CTCAGTGAAGCAAATGAAGTAATTAAAAGTCAAAAGGCATCCATAGCTGAGCTGAAGACA 1080
|||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||
Sbjct 1172 CTCAGTGAAGCAAATGAAGTAATTCAAAGTCAAAAGGCATCTATAGCTGAACTGAAGACG 1231
Query 1081 GGGTTGGATGAAGAGAGAAATCAAAGAAGAGAGGAAAGAGAAACTGCCGTTGCTGAACTC 1140
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1232 GGGTTGGATGAAGAGAGAAACCAAAGAAGAGAGGAAAGAGAAACTGCCATTGCTGAACTC 1291
Query 1141 AAAGCTGCGATGCATAGATGCCAAATTGAAGCTCAGGAAGAATTGAAAAGATTTTCTGAT 1200
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 AAAGCTGCGATACATAGATGCCAAATTGAAGCTCAGGAAGAATTGAAAAGATTTTCTGAT 1351
Query 1201 GCTGCTATGAGACACGAGAGGGAACAACAAGAAGTAATCAACAAAATGAAGGAATCAGAG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1352 GCTGCTATGAGACACGAGAGGGAACAACAAGAAGTAATCAACAAAATGAAGGAGTCAGAG 1411
Query 1261 AAAGAAAGGTCAATGCAAGTGGAAACATTGATGTCGAAATTGGAAGATACGAGGCAGAGG 1320
||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 1412 AAAGAAAAGTCAATGCAAGTCGAAACATTGATGTCAAAATTGGAAGATACAAGGCAGAGG 1471
Query 1321 TTGGTCG-ATTCTGACAATAGAAACCGTCAGCTAGAAGCTCAAGTGTCTGAGGAGCAGCT 1379
||||| | |||||| ||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1472 TTGGT-GTGTTCTGAGAATAGAAACCGTCTGCTAGAAGCTCAAGTTTCTGAGGAGCAGCT 1530
Query 1380 TGCTTCTGCTAATGCACaaaaaaaaTTGGAAGAACTTGACCTTGAAATAAAAAGACTGCA 1439
||||| |||| |||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1531 TGCTTTTGCTGATGCACAAAAAAAACTGGAAGAACTTGACCTTCAAGTAAAAAGACTGCA 1590
Query 1440 AAAGGATCTGGACAGTG-AAA--AGGCAGCTCGAGAAGAAGCATGGGCGAAAGTGTCTGC 1496
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1591 AAAGGATCTGGACAGTGAAAAGCAGGCAGCTCGAGAAGAAGCATGGGCGAAAGTGTCTGC 1650
Query 1497 CTTAGAGCTAGAGATAAGTGCTGCTGTTCGAGACCTTGACGTCGAAAGACAGAGACACCG 1556
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 CTTAGAACTAGAGATAAGTGCTGCTGTTCGAGACCTTGACGTCGAAAGACAGAGACACCG 1710
Query 1557 TGGTGCAAGGGAAAGAATCATGCTCCGTGAAACTCAGATGCGGGCATTTTATTCTACGAC 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 TGGTGCAAGGGAAAGAATCATGCTCCGTGAAACTCAGATGCGGGCATTTTATTCTACGAC 1770
Query 1617 TGAGGAGATCTCGGCTCTGTTTGCAAAGCAGCAGGAACAGCTCAAGACTATGCAGAGAAC 1676
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 TGAGGAGATCTCGGCTTTGTTTGCAAAGCAGCAGGAACAGCTCAAGACTATGCAGAGAAC 1830
Query 1677 TCTGGAAGATGAGGATAATTGTGACAATACTTCACTAGATATTGATCTTAATCCAATAAA 1736
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 TCTAGAAGATGAGGATAATTGTGACAATACTTCACTAGATATTGATCTTAATCCAATAAA 1890
Query 1737 CAGAAGTCCCAACAGAGCTAATACGCAGGAAGATAAAAGAGCAACTTACCATTTGAATTG 1796
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1891 CAGAAGTCCCAACAGAGCTAATACGCAGGGAGATAAAAGAGCAACTTCCCATTTGAATTT 1950
Query 1797 TGCTGCCAGGGCAAGCTCGTCCACTTCAGGGCAAAGGTCTACCAGAAATGAAGTTTTGGA 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1951 TGCTGCCAGGGCAAGCTCGTCCACTTCAGGGCAAAGGTCTACCAGAAATGAAGTTGTGGA 2010
Query 1857 TACGTCATGTGAAGATGCAGATGCTACCCAAAAGCATGATTGTGAAATCATGAGTCAGGA 1916
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2011 TACGTCATGTGAGGATGCAGATGCTACCCAAAAGCATGATTGTGAAATCATGAGTCAGGA 2070
Query 1917 AGGCCAAAACACCCAAGAAGCAGAGTATCCAAGCTCTGA-AAAGGTCGCAAAGGGTGGCT 1975
||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 2071 AGGCCAAAACACCCAAGAAGCAGAGTATCCAAGCTCTGATAAAGTT-GCAAAGGGTGGCT 2129
Query 1976 TTGGCTCAGATATAGAAGGTGTTGGTACAGCACCCACTTCGGGAACAGACCCTGTAGGAA 2035
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2130 TTGGCTCAGATATAGAAGGTATTGGTACAGCACCCACTTCGGGAACAGACCCTGTAGGAA 2189
Query 2036 CAGAGCAAGTTAATGAAACTCAAAGTCCAGGAAATGATTATGAGAGAAATGGTCATCTGA 2095
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2190 CAGAGCAAGTCAATGAAACTCAAAGTCCAGGAAATGATTATGAGAGAAATGATCATCTGA 2249
Query 2096 GGAACTCGCTTATTTTAGCTGGTGATACAATGCAAATAGATTGTGAAACTCAGGTACATG 2155
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2250 GGAAGTCTATTATTTTAGCTGGTGATACAATGCAAATAGATTGTGAAACTCAGGTACATG 2309
Query 2156 AAAGTGTTCAGAATGATGGAGCTGTTCTCTTGTTAAGGAACCCGAACGATCAAAGGGATA 2215
|||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2310 AAAGTGTTCAGATTGAAGGAGCTGTTCTCTTGTTAAGGAACCCGAACGATCGAAGGGATA 2369
Query 2216 CGCAAGACACAGAGGGAGTAGGCACTATAAGGACGTCGGATCTTCTAGCTTCTGAAGTTG 2275
| ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 2370 CTCAAGACATAGAGGGAGTAGGTACTATAGGGACGTCGGATCTTCTAGCTTCTGAAGTTG 2429
Query 2276 CGGGGAGTTGGGCTAATAGCACGGCTCCTTCTGTACATGGAGAAAACGAAACTGAAAGAA 2335
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2430 CGGGGAGTTGGGCTAATAGCACGAATCCTTCTGTACATGGAGAAAACGAAACTGAAAGAA 2489
Query 2336 GTAGAGAAGATGAAGAGAGTCAGACTCAAAAAATCAAGGAAGTGACCGTAGTACAGGATT 2395
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2490 GTAGAGAAGATGAAGAGAGTCAGACTCAAAAAATCAAGGAAGTGACCATAGTACAGGATT 2549
Query 2396 CTGCTGGTCAGATAGGCGAAAGCCAAACTAAACCGACAAGTCCAGGGGTCCTGGTGACTA 2455
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2550 CTGCTGGTCAGATAGGGGAAAGTCAAACTAAACCGACAAGTCCAGGGGTCCTGGTCACTA 2609
Query 2456 AGAAGGATGATGCTGAGCCTGAGCGTGGAGTTGTTAACGAGCCAGTGGGGATCATTGATC 2515
| ||||||||||| || ||||||||||| ||||||||||||||||||||| |||||
Sbjct 2610 ACAAGGATGATGC--AG----AGCGTGGAGTTATTAACGAGCCAGTGGGGATCACTGATC 2663
Query 2516 AAGGGAAGATAAAACATGGTACTGGTTCGGACTCAGAGACAGAGAGTTGTTCGGAATCTG 2575
||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 2664 AAGGGAAGATAAAACATGGTACTCGTTCGGACTCAGAGACAGAGAGTTGTTCTGACTCTG 2723
Query 2576 ATGTTGATCATGAGAATGAAAAACACAATCCTGTCTCAGACTCTGATACAGAGGGTTCTG 2635
||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2724 ATGATGATCATGAGAAGGAAAAACACAATCCTGTCTCAGATTCTGATACAGAGGGTTCTG 2783
Query 2636 ATATGAATGATGACAAGGGATCACTCTCTTTGGATCCCGATACAGAA-GAAAGCCATGAA 2694
|||||||||||||||||||||||||||| | |||||| ||||||||| ||| ||||||||
Sbjct 2784 ATATGAATGATGACAAGGGATCACTCTCGTCGGATCCTGATACAGAAAGAA-GCCATGAA 2842
Query 2695 GCTGATGGGGATCAGAA-A--CAAGTGGACACCATGGATGAAGACGATAAAGCTACTTAG 2751
| ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 2843 GTTGATGGGGATCAGAAGAAACAAGTGGACACCATGGACGAAGACGATAAAGCTACTTAG 2902
Query 2752 CAAGGTTTCCTTTTCAAAATCTCATTCTCAGTTAACA-GATTCATGATTTTACAGTCTTT 2810
|| | || || |||||| |||| ||| | ||| |||| | ||||||||||||||||||||
Sbjct 2903 CATGATTCCCGTTTCAAGATCTTATTATGAGT-AACATG-TTCATGATTTTACAGTCTTT 2960
Query 2811 -CCAAATCCCTCTTTGTTTTGTATTCGTACACACCGGGCTCATTTTTTCGTTTACATTAG 2869
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 2961 TCCAAATCCCTCTTTGTTTTGTATTCGCACACACCGGGCTCATTTTGTCGTTTACATTAG 3020
Query 2870 AAGTAGGATGTAGATAACGCAGGACAAATGGTAAGGAGTTGTAA 2913
||||||| ||||||||||||||| |||||||||||| ||||||
Sbjct 3021 AAGTAGGGTGTAGATAACGCAGGTCAAATGGTAAGGT-TTGTAA 3063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146437306617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5