BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483684
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45470.1 | Symbols: FLA8, AGP8 | FASCICLIN-like arabinogalac... 2473 0.0
AT3G60900.1 | Symbols: FLA10 | FASCICLIN-like arabinogalactan-p... 1142 0.0
> AT2G45470.1 | Symbols: FLA8, AGP8 | FASCICLIN-like arabinogalactan
protein 8 | chr2:18742540-18744111 REVERSE LENGTH=1572
Length=1572
Score = 2473 bits (1339), Expect = 0.0
Identities = 1487/1557 (96%), Gaps = 15/1557 (1%)
Strand=Plus/Plus
Query 1 CCACTTCCTCTGCTCCACGCTGACAC-T-CAAAAACTCAAAACCGTCTCATCATGGCGGC 58
|||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 1 CCACTTCCTCTGCTCCACACTGACACTTGAAAAAACTCAAAACCGTCTCATCATGGCGGC 60
Query 59 GTCACAGACCTTCTCACTCCTCGCCTTCACTTTTTCCCTCCTCGCCGTCGCTTCCACCGT 118
||||||||| ||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 61 GTCACAGACATTCTCACTCCTCGCCTTCACTTTCTCCCTCCTCGCCTTTGCTTCCACCGT 120
Query 119 GAGTAGCCACAACATCACTCAAATCCTCGCTGATTCTCCTGATTACTCTTCCTTCAACAG 178
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 GAGTAGCCACAACATCACTCAAATCCTCGCTGATTCTCCAGATTACTCTTCCTTCAACAG 180
Query 179 CTACCTTTCTCAGACGAAGCTCGCCGACGAGATCAACAGCCGCACGACGATTACAGTCCT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 CTACCTTTCTCAGACGAAGCTCGCCGACGAGATCAACAGCCGCACGACGATTACAGTTCT 240
Query 239 CGTCCTTAACAATGGCGCAATGTCTGCTCTCGCCGGAAAACATCCACTCTCCGTCATTAA 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 CGTCCTTAACAATGGCGCAATGTCTGCTCTCGCCGGAAAACATCCACTCTCCGTTATTAA 300
Query 299 AAGCGCTTTAAGCCTCCTCGTACTCCTCGATTACTACGATCCACTAAAACTCCACAAGAT 358
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 301 AAGCGCTTTAAGCCTCCTCGTCCTCCTCGATTACTACGATCCACAAAAACTCCACAAGAT 360
Query 359 CTCCAAAGGCACAACTCTCTCCACCACACTTTACCAAACCACCGGAAACGCTCCCGGAAA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCCAAAGGCACAACTCTCTCCACCACACTTTACCAAACCACCGGAAACGCTCCCGGAAA 420
Query 419 CCTAGGATTCGTCAACATCACCGATCTTAAAGGAGGCAAAGTCGGATTTGGCTCCGCCGC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTAGGATTCGTCAACATCACCGATCTTAAAGGAGGCAAAGTCGGATTTGGCTCCGCCGC 480
Query 479 TTCAGGTTCCAAACTCGATTCATCTTACACCAAATCCGTTAAACAAATCCCTTACAACAT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTCAGGTTCCAAACTCGATTCATCTTACACCAAATCCGTTAAACAAATCCCTTACAACAT 540
Query 539 CTCAATCCTCGAGATCGATGCTCCGATCATCGCTCCGGGAATTTTAACCGCTCCTGCTCC 598
||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 541 CTCAATCCTCGAGATTGATGCTCCGATCATCGCTCCCGGAGTTTTAACCGCTCCTGCTCC 600
Query 599 TTCCGCCGCCTTGTCAAACATCACCGGATTACTAGAGAAAGCCGGTTGCAAAACCTTTGC 658
||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 601 TTCCGCCTCCTTGTCAAACATCACCGGATTACTCGAAAAAGCCGGTTGCAAAACCTTTGC 660
Query 659 GAATTTGCTTGTCTCAAGTGGAGTTCTCAAGACTTACGAATCCGCCGTTGAAAAAGGCTT 718
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 TAATTTGCTTGTCTCAAGTGGAGTACTCAAGACTTACGAATCCGCCGTTGAAAAAGGCTT 720
Query 719 GACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCTGAAGGTGTACCAGATCTGACGAA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCTGAAGGTGTACCAGATCTGACGAA 780
Query 779 GCTCACACAAGCTGAGGTGGTCTCGCTCTTAGAGTATCACGCCCTCGCTGAGTATAAACC 838
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCTCACACAAGCTGAGGTAGTCTCGCTCTTAGAGTATCACGCCCTCGCTGAGTATAAACC 840
Query 839 TAAAGGCTCATTGAAGACTAACAAGAACAATATCTCCACGTTAGCCACTAGCGGCGCCGG 898
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 TAAAGGCTCATTGAAGACTAACAAGAACAATATCTCCACGTTAGCCACTAACGGCGCCGG 900
Query 899 GAAATTCGATCTAACTACCTCTACCTCCGGCGATGAAGTTATTCTCCACACCGGCGTTGC 958
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 901 AAAATTCGATCTAACGACCTCTACCTCCGGCGACGAAGTTATTCTCCACACCGGCGTTGC 960
Query 959 TCCGTCGAGACTCGCGGACACTGTACTCGACGCGACTCCGGTTGTGATATTCACCGTGGA 1018
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 961 TCCGTCGAGACTCGCGGACACTGTGCTCGACGCGACTCCGGTTGTGATATTCACTGTGGA 1020
Query 1019 TAATGTCCTCCTCCCTGCTGAGCTATTCGGAAAATCTAAATCTCCTTCTCCGGCACCGGC 1078
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1021 TAATGTCCTTCTCCCTGCTGAGCTATTCGGAAAATCTAAATCTCCATCTCCGGCACCGGC 1080
Query 1079 GCCGGAGCCAGTTACCGCACCGACACCATCTCCGGCGGATGGACCTTCACCCACCGCGGC 1138
||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||
Sbjct 1081 GCCTGAGCCAGTTACCGCACCGACACCATCTCCAGCGGATGCACCTTCACCCACCGCAGC 1140
Query 1139 TTCACCACCGGCACCTCCGACGGATGATTCACCTGAAAGTGCTCCTTCAGACTCGCCGAC 1198
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||
Sbjct 1141 TTCACCACCGGCACCTCCGACGGACGAGTCACCGGAAAGTGCTCCTTCAGACTCGCCAAC 1200
Query 1199 AGGTTCAGCGAACAGTAAGTCGGCTAACGCGGCGGTTGGCGTGAGTACACCGTCGTTGTT 1258
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 1201 AGGTTCAGCGAACAGTAAGTCAGCTAACGCAGCGGTTGGCGTGAGCACACCGTCGTTGTT 1260
Query 1259 CACCGCATTGGTCACTATCGCCGCCGTTGTCGTCTCCGTGTCTCTCTGCTCTTAGAACCT 1318
||||||||||||||| ||||||||| | | |||||||||||||||||||||||| |||||
Sbjct 1261 CACCGCATTGGTCACGATCGCCGCCATAGCCGTCTCCGTGTCTCTCTGCTCTTAAAACCT 1320
Query 1319 TTCGTAATTACGCAGACTGCCACTCCCtttgtttatttttaatttattt-tctttt-aat 1376
||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||
Sbjct 1321 TTCGTAATTACGCAGGCTGCCACTCCCTTTGTTTATTTTTAATTTAATTATCTTTTCAAT 1380
Query 1377 ttttatttttGTGGTTATGCGTTGTTGAGTTTGAAAACATGGGATTAGTGAGTGAGGTTT 1436
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TTTTATTTTTGTGGTTATGTGTTGTTGAGTTTGAAAACATGGGATTAGTGAGTGAGGTTT 1440
Query 1437 -ATTTAAATCTTTTGTTAATCACATTTTCATTATTGCTTTCAGTGTTGATCTGATTGAGA 1495
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1441 TATTTAAATCGTTTGTTAATCACATTTTCATTATTGCTTTCAGTGTTGATCTGATAGT-A 1499
Query 1496 TCTT-T-G---TCCTTCAACTT--ATTTTATTTAACTTCTTTTACATTTTTGGATAA 1545
|||| | | || || ||| | || |||||||||||||| |||||||||||||
Sbjct 1500 TCTTGTTGAGATCTTTGG-CTTTCACTT-ATTTAACTTCTTTTCCATTTTTGGATAA 1554
> AT3G60900.1 | Symbols: FLA10 | FASCICLIN-like arabinogalactan-protein
10 | chr3:22499360-22501239 REVERSE LENGTH=1880
Length=1880
Score = 1142 bits (618), Expect = 0.0
Identities = 1053/1261 (84%), Gaps = 38/1261 (3%)
Strand=Plus/Plus
Query 51 ATGGCGGCGTCACAGACCTTCTCACTC-C-TCGCCTTCACTTTTTCCCTCCTCGCCGTCG 108
|||||| | |||| || ||| |||||| | |||| ||||| || || |||||| |||| |
Sbjct 399 ATGGCGACATCAC-GAGCTT-TCACTCTCTTCGCTTTCACATTATCTCTCCTCACCGTAG 456
Query 109 CTTCCACCGTGAGTAGCCACAACATCACTCAAATCCTCGCTGATTCTCCTGATTACTCTT 168
|||| ||||| |||| ||||| |||||||||||| ||||| | || || || || |
Sbjct 457 CTTCTACCGTCTCCGGCCATAACATTACTCAAATCCTCTCTGATACGCCGGAATATTCCT 516
Query 169 CCTTCAACAGCTACCTTTCTCAGACGAAGCTCGCCGACGAGATCAACAGCCGCACGACGA 228
| ||||||| |||||||||||| || || ||||||||||| |||||||||||||| || |
Sbjct 517 CATTCAACAACTACCTTTCTCAAACAAAACTCGCCGACGAAATCAACAGCCGCACTACAA 576
Query 229 TTACAGTCCTCGTCCTTAACAATGGCGCAATGTCTGCTCTCGCCGGAAAACATCCACTCT 288
| || ||||| || || |||||||||||||||||| | |||||||||||||| |||||||
Sbjct 577 TCACCGTCCTTGTTCTCAACAATGGCGCAATGTCTTCCCTCGCCGGAAAACACCCACTCT 636
Query 289 CCGTCATTAAAAGCGCTTTAAGCCTCCTCGTACTCCTCGATTACTACGATCCACTAAAAC 348
||||| | |||| ||| | ||||||||||| |||||||| ||||||||||| ||||||
Sbjct 637 CCGTCGTCAAAAATGCTCTCAGCCTCCTCGTCCTCCTCGACTACTACGATCCTTTAAAAC 696
Query 349 TCCA-CAAGATCTCCAAAGGCACAACTCTCTCCACCACACTTTACCAAACCACCGGAAAC 407
|||| | || |||| ||||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 697 TCCATC-AGCTCTCTAAAGGCACAACTCTCACCACCACGCTTTACCAAACCACCGGACAC 755
Query 408 GCTCCCGGAAACCTAGGATTCGTCAACATCACCGATCTTAAAGGAGGCAAAGTCGGATTT 467
|||| ||| |||||||||||||| ||| |||||||||| ||||||||||||||||| |||
Sbjct 756 GCTCTCGGGAACCTAGGATTCGTTAACGTCACCGATCTCAAAGGAGGCAAAGTCGGCTTT 815
Query 468 GGCTCCGCCGCTTCAGGTTCCAAACTCGATTCATCTTACACCAAATCCGTTAAACAAATC 527
|||||||||||| | || ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 816 GGCTCCGCCGCTCCTGGCTCCAAGCTCGATTCCTCTTACACCAAATCCGTTAAACAAATC 875
Query 528 CCTTACAACATCTCAATCCTCGAGATCGATGCTCCGATCATCGCTCCGGGAATTTTAACC 587
|||||||||||||| | ||||| ||| | ||||||||||||||||| ||||| ||||||
Sbjct 876 CCTTACAACATCTCCGTTCTCGAAATCAACGCTCCGATCATCGCTCCCGGAATCTTAACC 935
Query 588 GCTCCTGCTCCTTCCGCCGCC-TTGTCA--AACATCACCGGA-TTACTAGAGAAAGCCGG 643
|| ||||||||||| ||||| || | |||||||||||| || || |||||||||||
Sbjct 936 GCACCTGCTCCTTCTTCCGCCGGAGTTAGCAACATCACCGGACTT-CTCGAGAAAGCCGG 994
Query 644 TTGCAAAACCTTTGCGAATTTGCTTGTCTCAAGTGGAGTTCTCAAGAC-TTACGAATCCG 702
|||||||||||| ||||||||||| || || || || ||| | || || || |||||||
Sbjct 995 TTGCAAAACCTTCGCGAATTTGCTCGTATCGAGCGGTGTTATTAAAACATT-CGAATCCA 1053
Query 703 CCGTTGAAAAAGGCTTGACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCT-GAAGGT 761
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1054 CCGTTGAAAAAGGCTTGACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCTAGA-GGT 1112
Query 762 GTACCAGATCTGACGAAGCTCACACAAGCTGAGGTGGTCTCGCTCTTAGAGTATCACGCC 821
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1113 GTACCAGATCTGACGAATCTCACACAAGCTGAGGTGGTCTCGCTCCTAGAGTATCACGCC 1172
Query 822 CTCGCTGAGTATAAACCTAAAGGCTCATTGAAGACTAACAA-GAACAATATCTCCACGTT 880
|||||||| || ||||| ||||| || || ||||||||||| || | ||||||||| ||
Sbjct 1173 CTCGCTGAATACAAACCCAAAGGATCGTTAAAGACTAACAAAGA-CGCTATCTCCACTTT 1231
Query 881 AGCCACTAGCGGCGCCGGGAAATTCGATCTAACTACCTCTACCTCCGGCGATGAAGTTAT 940
|||||||| ||||||||| |||| |||| |||| || || || ||||| || || |||||
Sbjct 1232 AGCCACTAACGGCGCCGGTAAATACGATTTAACGACGTCAACTTCCGGTGACGAGGTTAT 1291
Query 941 TCTCCACACCGGCGTTGCTCCGTCGAGACTCGCGGACACTGTACTCGACGCGACTCCGGT 1000
|||||| |||||||||| ||||||||||||||| ||||| || |||| | ||| || ||
Sbjct 1292 TCTCCATACCGGCGTTGGTCCGTCGAGACTCGCCGACACGGTGGTCGATGAGACACCTGT 1351
Query 1001 TGTGATATTCACCGTGGATAATGTCCTCCT-CCCTGCTGAGCTATTCGGAAAATCTAAAT 1059
||| |||||||| ||||||||||| ||||| ||| |||||||| |||||||||||| ||
Sbjct 1352 TGTTATATTCACTGTGGATAATGTGCTCCTTCCC-GCTGAGCTTTTCGGAAAATCTTCAT 1410
Query 1060 CTCCTTCTCCGGCACCGGCGCC-G-GAGC-CA--GTTACCG-CACCG---A---CACCAT 1107
| || | |||||||||| ||| | ||| || | |||| | ||| | |||| |
Sbjct 1411 CGCCGGCGCCGGCACCGGAGCCAGTGAGTGCACCGACACCGACCCCGGCTAAGTCACCGT 1470
Query 1108 CTCCGGCGGATGGACCTTCACCCACCGCGGCTTCACCACCGGCACCTCCGACGGATGA-T 1166
|||| | ||| | |||||| || ||||| ||||| || || ||||| ||| |||||| |
Sbjct 1471 CTCCTGTGGAAGCACCTTCTCCAACCGCAGCTTCTCCGCCAGCACCACCGGTGGATGAAT 1530
Query 1167 -T-CACCTGAAAGTGCTCCTTCAGACTCGCCGACAGGTTCAGCGAACAGTAA-GTCGGCT 1223
| |||| ||| | ||||| ||||||||||||||| |||||| ||||||||| | ||
Sbjct 1531 CTTCACCGGAAGGAGCTCCGTCAGACTCGCCGACAAGTTCAGAGAACAGTAATG-CGAAA 1589
Query 1224 AACGCGGCGGTTGGCGTGAGTACACC-GTCGTTGTTCACCGCATTGGTCACTATCGCCGC 1282
||||||||| || ||| | | || | ||||||||||||||||||||||||| |||||
Sbjct 1590 AACGCGGCGTTTCACGTTAACGCTCCTG-CGTTGTTCACCGCATTGGTCACTATTGCCGC 1648
Query 1283 C 1283
|
Sbjct 1649 C 1649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76254627855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5