BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483690
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45530.1 | Symbols: | RING/U-box superfamily protein | chr2... 1445 0.0
> AT2G45530.1 | Symbols: | RING/U-box superfamily protein | chr2:18756478-18757513
FORWARD LENGTH=1036
Length=1036
Score = 1445 bits (782), Expect = 0.0
Identities = 881/926 (95%), Gaps = 17/926 (2%)
Strand=Plus/Plus
Query 1 AAAGTCaaaaaaaGTTGAATCTCTGTTTTTCGTCTGGTCCCATAGTGAATC---G-T--- 53
||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 18 AAAGTAAAAAAAAGTTGAATCTCTGTTTTTCGTCTGGTCCCATAGTGAATCGTGGCTCAG 77
Query 54 ATGGCTTCCTAGGGTTTGTGG-AAT-TGATAAGGGGAATACAGATTTGAGATGCAAAGTA 111
||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 78 ATGGCTTCCTAGGGTTTGTGGAAATCGGA-GAGGGGAATACAGATTTGAGATGCAAAGTA 136
Query 112 GCTCCAGCTCCGGTGGTGGTGACGACCTTG-AAA--agcagcagcagcagcagAAGGACA 168
||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 137 GCTCCAGCTCC---GGTGGTGACGACCTTGAAAAGCAGCAGCAGCAGCAGCAGAAGGACA 193
Query 169 AGGCTCACCAGAAGCAGAGCGAGTCAGCCAATGAATCCAACCACCTCACAATCGTTGTCT 228
|| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 194 AGTCTCCCCAGAAGCAGAGCGAGTCAGCCAATGAATCGAACCACCTCACAATCGTTGTCT 253
Query 229 GCAATGGAGATTCTAGTCGGGAAGAATTGGTGGCTCAGATCCCACCGAAAAAGGAGGTTA 288
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 254 GCAATGGAGATTCTAGTCGGGAAGAATTGGTGGGTCAGATCCCACCGGAAAAGGAGGTTA 313
Query 289 GCTTATCCAGAAACGGAAGCTCTCACGAGCAGTGCAGGGTTTGTCTACAAGAGAAAGAAG 348
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 314 GCTTATCCAGAAACGGAAGCTCGCACGAGCAGTGCAGGGTTTGTCTACAAGACAAAGAAG 373
Query 349 AGGTTTTGATTGAACTAGGTTGTCAATGTCGTGGTGGTCTTGCTAAAGCTCATAGGTCTT 408
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 374 AGGTTTTGATTGAACTAGGTTGTCAATGTCGTGGTGGTCTTGCTAAAGCTCACAGGTCTT 433
Query 409 GTATAGATGCTTGGTTTCGTACTAAAGGCTCTAATCAGTGTGAGATCTGTCAAGTTGTTG 468
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 434 GTATAGATGCTTGGTTTCGTACTAAAGGCTCTAACCAGTGTGAGATCTGTCAAGTTGTTG 493
Query 469 CTGTTAATGTCACACCTCCTGAGACTCAACCAACTACAAATTATTGGGTTTGGAGGATTG 528
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 494 CTGTTAATGTCACACCTCCTGAGACTCAACCAACTACAAACTATTGGGTTTGGAGGATTG 553
Query 529 ATCCTAGCTATAGACAAGAGGAGCGTGAGAGAGGATGTTTTAGTCCGCTTTGGGTTGCAT 588
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 554 ATCCTAGCTATAGACAAGAAGAGCGTGAGAGAGGATGCTTTAGTCCGCTTTGGGTTGCAT 613
Query 589 TCTCGATTCTGATTGGTGGTTTAATGCTTGATGTGTTGATATCTATCACACTCGGGGTCT 648
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 614 TTTCGATTCTGATCGGTGGTTTAATGCTTGATGTGTTGATATCTATCACACTTGGGGTCT 673
Query 649 CTGCGCTTCCCGTGAACATCATCATTGGAGTCATAGTGGTGCTTGGGCTAGGAACTGCTC 708
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 674 CTGCGCTTCCGGTGAACATCATTATTGGAGTCATAGTTGTGCTTGGGCTAGGAACAGCTC 733
Query 709 TAAGGCTGACTTTGGAGTTCTGTTATGAGTGGAGCTTGAGAAGAGCCGTCCACAGGGCGG 768
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 734 TAAGGCTGACTTTGGAGTTCTGTTATGAGTGGAGCTTGAGAAGAGCGGTTCACAGGGCGG 793
Query 769 TGCAGAGGGCGGAAGCAAACAACTTCAATAATATTGCGTACCCACCTGCCTTGTAGGGGG 828
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 794 TGCAGAGGGCGGAAGCGAACAACTTCAGTAATATTGCGTACCCACCTGCCTTGTAGGGGG 853
Query 829 GAAACTATGTCAAGTTAAAA-CTCGTGTGTATGTAAAAGTTGTGTGAGACGTGTACAACT 887
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct 854 GAAACTATGTCAAGTTAAAAACTCGTGTGTGTGTAAAAGTTGTGTGAGACGTGTAGAACT 913
Query 888 ACAATGCTGGATTTGTTGGGAAAGAA 913
||||||||||||||||||||||||||
Sbjct 914 ACAATGCTGGATTTGTTGGGAAAGAA 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48676888443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5