BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483695
Length=2114
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45590.1 | Symbols: | Protein kinase superfamily protein | ... 2972 0.0
> AT2G45590.1 | Symbols: | Protein kinase superfamily protein
| chr2:18786658-18788988 FORWARD LENGTH=2331
Length=2331
Score = 2972 bits (1609), Expect = 0.0
Identities = 1980/2149 (92%), Gaps = 65/2149 (3%)
Strand=Plus/Plus
Query 1 ACCTTCTTCTTCTTCAATGGAAACTCCCGTTTTTAATGACACTTCTTTAACTTTCTACAT 60
||| ||||||||||||||||||||| ||| || |||||||||||| |||||| ||| ||
Sbjct 1 ACCATCTTCTTCTTCAATGGAAACT-CCGGATTAAATGACACTTCTGTAACTTCCTATAT 59
Query 61 TTACTAAAATGCCATCTCG-----C-CAGCCAGAT-TT---TC-C-G---CCGACGCCGA 105
||||||||||||||||||| | | ||||||| || | | | |||||||| |
Sbjct 60 TTACTAAAATGCCATCTCGCCTCTCTCCGCCAGATATTCCGCCGCTGCAACCGACGCCTA 119
Query 106 CTGTTAGTGACGGCCACCACCATTTCCAGACTCTACCACTTATCATCGCCGGTTCTTTGA 165
| |||||||||||||| || | |||||||||||| ||||||||||| ||||||||| |||
Sbjct 120 CGGTTAGTGACGGCCATCATCGTTTCCAGACTCTTCCACTTATCATAGCCGGTTCTCTGA 179
Query 166 CTTTAACCGGAGTGTTACTCATCCTCTTCACTGTACTTATTTACCGGAGACTCTATCGAA 225
||||||||||||| |||||||||||| ||||| ||||||||||||| |||||||| ||||
Sbjct 180 CTTTAACCGGAGTTTTACTCATCCTCGTCACTTTACTTATTTACCGAAGACTCTACCGAA 239
Query 226 ACCGTACGGCTCCTTCAGATCTTATCTCCAACTCCAAATCTCCTCAACAGTACCAATGTC 285
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 240 ACCGTACGGCTCCTTCAGATCTTATCTCCAACTCCAAGTCTCCTCAACACTACCAATGTC 299
Query 286 GACGTTTCTCTTTCTCTCAGCTCCGCCGCGCTACAAACTCTTTCTCCGAGTCGACTCAGC 345
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 GACGCTTCTCTTACTCTCAGCTCCGCCGCGCTACAAACTCTTTCTCCGAGTCGACTCACC 359
Query 346 TCGGTCACGGCGGATTCGGCTCTGTTTACAAAGCTGATTTCTCC-AGTGGCGGTGACTCT 404
||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||
Sbjct 360 TCGGTCACGGCGGATTCGGCTCTGTTTACAAAGCTGATTTC-CCGAGTGGCGGCGATTCA 418
Query 405 CTCGCCGTCAAAGTCATGGATACATCCGCTGGTTCTTTACAAGGCGAGCGTGAGTTTCAC 464
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 419 CTCGCCGTCAAAGTCATGGATACCTCCGCTGGTTCTTTACAAGGCGAACGTGAGTTTCAC 478
Query 465 AATGAGCTTtctctctcttctcacttaatcggctctcctcatgtcgtctctctcctcgga 524
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 479 AACGAGCTTTCTCTCTCTTCTCACTTAATTGGCTCTCCTCATGTCGTCTCTCTCCTTGGA 538
Query 525 ttctcctccGATCGTCGTGGTCGGAAGCTTATCCTCGTTTACGAGCTTATGGCTAATCGT 584
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 539 TTCTCCTCCGATCGTCGTGGTCGGAAGCTTATCCTCGTCTACGAACTTATGGCTAATCGT 598
Query 585 AGTTTACAAGACGCGCTTTTGGATCGCAAATGTGAGGAGCTTATGGATTGGAACAAAAGG 644
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 599 AGTTTACAAGACGCGCTTTTGGATCGCAAATGTGTGGAGCTTATGGATTGGAACAAAAGG 658
Query 645 TTTGAGATTGCGACGGATATCGCTAAAGGAATCGAGTTTCTTCACCATTGCTGTGATCCA 704
||||||||||| |||||||| || ||||| |||||||||||||||||||| |||||||||
Sbjct 659 TTTGAGATTGCCACGGATATAGCAAAAGGCATCGAGTTTCTTCACCATTGTTGTGATCCA 718
Query 705 ATTATCATCCATGGAGATATTAAACCTAGTAATATCCTTCTCGATTCTGATTTCAAGGCC 764
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 719 ATTATAATCCATGGAGATATTAAACCTAGTAACATCCTTCTCGATTCTGATTTCAAAGCC 778
Query 765 AAAATCGGAGATTTCGGTCTCGCGAGAGTAAAGTCCGAGGATTTAGATACTAGGATTCTG 824
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 779 AAAATCGGAGATTTCGGTCTCGCGAGAGTAAAGTCGGAGGATTTCGATACTAGGATTCTG 838
Query 825 ATTGAGGAAGATGAGAAGAGCAAGGATGTTTTTGAAGATAATGGGTCGATTCTTGAAGAG 884
||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 839 ATTGAGGAAGAAGATAAGAGCAAGGATGTTGTTGAAGATAATGGGTCGATTCTTGAGGAG 898
Query 885 ACTGAAAGCGTGATTACTGTGTTTGAAGAGGGTAATAATGTTGCCAATCTCTCGCCGGAG 944
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 899 ACTGAAAGCGTGATTACTGTGTTTGAAGAAGGTAATAATGTTGTCAATCTCTCGCCGGAG 958
Query 945 AATTGTGGGATCAGTGTCTTGACGGAGACGGCGGTGGCGTCTCCCGAG-GAAAAATCTGG 1003
| ||||||||| ||||||||||| ||||||| |||| ||||| | | |||||||||||
Sbjct 959 ACTTGTGGGATTAGTGTCTTGACAGAGACGG---TGGCCTCTCCGG-GTGAAAAATCTGG 1014
Query 1004 ACTTTCGCCTGAGAATTGTGCAGTTAGCGTTTTGACGGTGGAGGTGGGAGTAGCATCTCC 1063
||||||||| |||||||||||||| ||| ||||||||||||||||||||| |||||||||
Sbjct 1015 ACTTTCGCCAGAGAATTGTGCAGTGAGCATTTTGACGGTGGAGGTGGGAGCAGCATCTCC 1074
Query 1064 GGGGCTGACATCGATACCGTCGCCGGAAACTTGTGCGATTAGCGTCTTGACGGGGACTGG 1123
|| | || ||||||||||||| ||||| ||||||||||||||||| ||||||| |||||
Sbjct 1075 GGCGATGGCATCGATACCGTCACCGGAGACTTGTGCGATTAGCGTTTTGACGGATACTGG 1134
Query 1124 ATTGTCACCGGGAGCTGCATCGGGTTTATCGCCGGAGAGTAGTAAGATTAAAGTGGGATC 1183
||||||||||| | | | | | || | || | | |||||||||||
Sbjct 1135 ATTGTCACCGGAA-----A--G--T--A--GC---A-AGC--T----T-AAAGTGGGATC 1170
Query 1184 GAAGAGAGATTGGTGGTGGAGACAGGACAACAATGGTGGAAGCAGAGGAGGGATTGAATC 1243
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1171 GAAGAGAGATTGGTGGTGGAAACAGGACAACAATGGTGGAAGCAGAGGAGGGATTGAATC 1230
Query 1244 AGGGAGTGTGAAGGATTACGTGATGGAATGGATTGGGAGTGAGATTAAGAAAGAGA-AC- 1301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1231 AGGGAGTGTGAAGGATTACGTGATGGAATGGATTGGGAGTGAGATTAAGAAAGAGAGACC 1290
Query 1302 -A--A-CAATAAGGAATGGATCAACAATGG-G-T----CATCATCGGTCTCTaagaagaa 1351
| | |||||||||||||||||||||||| | | ||||||| ||||||||||||||
Sbjct 1291 TAGCAACAATAAGGAATGGATCAACAATGGTGATGGGTCATCATCAGTCTCTAAGAAGAA 1350
Query 1352 gaagaaagagaagaagagaaagcctagagaatggtggaaggaagagttttgtgaagagct 1411
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1351 GAAGAAAGAGAAGAAGAGAAAGCCTAGAGAGTGGTGGAAGGAAGAGTTTTGTGAAGAGCT 1410
Query 1412 aactagaaagaagaggaaaaagaagaagaa-aaga---G-GG-TTAAGCTCAATCTCAAG 1465
||||||||||||||||||||||||||||| |||| | || |||||||||||||||||
Sbjct 1411 GACTAGAAAGAAGAGGAAAAAGAAGAAGAAGAAGAAAAGAGGGTTAAGCTCAATCTCAAG 1470
Query 1466 CATTGACTCTTGGTTTCATAGAGACGATGATGCTTCCTCTGTTCATGACCACAATCTTAA 1525
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1471 CATTGACTCTTGGTTTCATAGAGACGATGGTGCTTCCTCTGTTCATGACCACAATCTTAA 1530
Query 1526 CCCTACCAAGAGGAAGAAGAGGAATAGTATAGATTGGTGGGTAGATGGGTTAAGTGGGGA 1585
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 TCCTACCAAGAGGAAGAAGAGGAATAGTATAGATTGGTGGGTAGATGGGTTAAGTGGGGA 1590
Query 1586 TCTAAAGTCAGTCATTGGTaaaaaaaaCAGTCAAGATTCTGGTTTGTGGTGTGATGTGAA 1645
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 GCTGAAGTCAGTCATGGGTAAAAAAAACAGTCAAGATTCTGGTTTGTGGTGTGATGTGAA 1650
Query 1646 TGTTCAGAAGAGTGGCGGAGTCAGTAGCACACCGAGTATGAGAGGTACGGTGTGTTACAT 1705
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1651 TGTTCAGAAGAGTGGTGGAGTCAGCAGCACACCGAGTATGAGAGGTACGGTGTGTTACAT 1710
Query 1706 TGCACCAGAATGTGGCGGTGGAGGTGTGTTGTCTGAGAAATGTGATGTCTATAGTTTTGG 1765
||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1711 TGCACCAGAATGTGGAGGAGGAGGTGTGTTGTCTGAGAAATGCGATGTTTATAGTTTTGG 1770
Query 1766 GGTTCTGCTTTTGGTTCTTGTCTCAGGAAGACGGCCATTGCAGGTGACTGCATCACCGAT 1825
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1771 GGTTCTGCTTTTGGTTCTTGTCTCAGGAAGACGGCCATTGCAGGTGACTGCTTCGCCGAT 1830
Query 1826 GTCGGAGTTTGAGAGGGCTAATTTGATATCATGGGCGAAGCAATTGGCTTGCAATGGTAA 1885
||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct 1831 GTCGGAGTTTGAGAGGGCTAACTTGATTTCATGGGCTAAGCAATTAGCTTGCAATGGTAA 1890
Query 1886 ATTGTTGGAGTTAGTTGATAAATCTATACACTCTTTGGAGAAAGAGCAAGCGGTTCTTTG 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1891 ATTGTTGGAGTTAGTTGATAAATCTATACACTCTTTGGAGAAAGAGCAAGCGGTTCTTTG 1950
Query 1946 TATTACTATTGCATTGCTTTGTCTGCAAAGATCTCCAGTTAGGAGACCGACAATGAAGGA 2005
|||||||||||||||||||||||||||||||||||| |||| |||||| || ||||||||
Sbjct 1951 TATTACTATTGCATTGCTTTGTCTGCAAAGATCTCCGGTTAAGAGACCAACGATGAAGGA 2010
Query 2006 GATTGTTCAGATGCTTTCGGGTGCGTCCGAGCCACCGCATTTGCCGTTTGAGTTCTCACC 2065
||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 2011 GATTGTTGAGATGCTTTCGGGTGTGTCTGAGCCACCGCATTTGCCGTTTGAGTTCTCACC 2070
Query 2066 GTCGCCGCCTATGGGGTTTCCGTTTAAGTCAAGGAAGAAAGCAAGGTGA 2114
|||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 2071 CTCGCCGCCTATGGGTTTTCCGTTTAAGTCAAGGAAGAAAGCACGGTGA 2119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104818737960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5