BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483698
Length=2472
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45620.1 | Symbols: | Nucleotidyltransferase family protein... 3600 0.0
> AT2G45620.1 | Symbols: | Nucleotidyltransferase family protein
| chr2:18792864-18795904 FORWARD LENGTH=2528
Length=2528
Score = 3600 bits (1949), Expect = 0.0
Identities = 2346/2524 (93%), Gaps = 81/2524 (3%)
Strand=Plus/Plus
Query 1 AACATTGAAAGATCTTCGACTT-GCCAAAGTGTTTCACTTTCGCTCT-AATACTTCTTCT 58
||||||| |||||||||||||| || ||| ||||||||||||||||| || ||||| |||
Sbjct 1 AACATTGTAAGATCTTCGACTTGGCAAAATTGTTTCACTTTCGCTCTAAAAACTTCATCT 60
Query 59 TCACTTTCTCTTCTCCTCCATGGCGGACGGTGGGGCTGACCCTCCAGCTCCA-C--CATC 115
||||||||||| ||||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 61 TCACTTTCTCTCCTCCTCCATGGCGGACGGTGGGGCTGAACCTCCAGCTCCACCATCATC 120
Query 116 GATAAACGCCGGTGAATTTCTGTTGTCTATTCTT-CACGGAAGTCCTTCGCCGTCGTCAC 174
||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct 121 GATAAACGCCGGTGAATTTCTCTTGTCTATT-TTGCACGGAAGTCCTTCGCCGTCGTCAC 179
Query 175 AAGGTCCTCAG---CATCAGTCATTCGCTCTCGATCCAGCCATCGCAGCCATTGGCCCTA 231
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 AAGGTCCTCAGCATCATCAGTCATTCGCTCTCGATCCAGCCATCGCAGCCATTGGTCCTA 239
Query 232 CCGTGAATAATCCTTTTCCTCCGTCGAATTGGCAATCTAACGGTCATCGATCCGGTAATC 291
|||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 240 CCGTCAATAATCCTTTTCCTCCGTCGAATTGGCAATCTAACGGTCATCGACCCAGTAATC 299
Query 292 ATAA---TCCTTCTTGGCCACTGGCCTTTTCACCTCCTCCTAATCTTTCCCCCAATTTCC 348
|||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 300 ATAACCCTCCTTCTTGGCCACTCGCCTTTTCACCTCCTCATAATCTTTCCCCCAATTTCT 359
Query 349 TAGGGTTTCCTCAATTCCCGCTTAACCCTTTTC-CTACGAACCAATTCGACGGTAATCAA 407
|||||||||||||||| |||| || ||| |||| | ||||||||||||||||||||||||
Sbjct 360 TAGGGTTTCCTCAATTTCCGCCTAGCCC-TTTCACGACGAACCAATTCGACGGTAATCAA 418
Query 408 AGAGTATCTCCGGAAGATGCTTTTAGATTAGGGTTTCCTGGTACTGCAAA-CCACGCAAT 466
||||||||||| |||||||||| |||||||||||||||||| ||| |||| || || ||
Sbjct 419 AGAGTATCTCCAGAAGATGCTTATAGATTAGGGTTTCCTGGAACTACAAATCC-TGCTAT 477
Query 467 TCAGTCCATGGTACAGCAACA--A-CAACAGCAGCTACCGCCGCCGCAATCTGAGAATCG 523
||||||||||||||||||||| | || ||||||||||||||||||||||| |||| |||
Sbjct 478 TCAGTCCATGGTACAGCAACAGCAGCAGCAGCAGCTACCGCCGCCGCAATCAGAGACTCG 537
Query 524 GAAGCTTGTTTTTGGTTCTTTCTCGGGAGATGCTACTCAAAGCCTTAATGGGTTACATAA 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAAGCTTGTTTTTGGTTCTTTCTCGGGAGATGCTACTCAAAGCCTTAATGGGTTACATAA 597
Query 584 CGGAAACTTGAAGTATGATTCTAATCAACAGGAACAGCTCATGAGGCATCCCCAATCTAC 643
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 598 CGGGAACTTGAAGTATGATTCTAATCAACACGAACAGCTCATGAGGCATCCCCAATCTAC 657
Query 644 TCTCTCGAATTCTAACATGGATCCAAAC----CTC--CAT--G----A--A---CC-T-- 683
|||||||||||||||||||||||||||| ||| ||| | | | || |
Sbjct 658 TCTCTCGAATTCTAACATGGATCCAAACTTGTCTCATCATCGGAATCATGATCTCCATGA 717
Query 684 --AGA--GGAAGTCACAGCGGAAGAGGAAACTGGGGTCATATTGGGAATAACGGCAGGGG 739
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACAGAGGGGAGGTCACAGCGGAAGAGGAAACTGGGGTCATATTGGGAATAACGGCAGGGG 777
Query 740 TTTCAAGTCTA------CTCCTCCTCCTCCTGGATTTTCGAGTAACCAAAGAGGAAGGGA 793
||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 778 TTTAAAGTCTACTCCTCCTCCTCCTCCTCCTGGATTTTCGAGTAACCAAAGAGGATGGGA 837
Query 794 TATGAATTTAAAAAGTAAGGATGATGATAGAGGGATGGGTAGTTTCCATAGGAATCATGA 853
||||| |||| |||||||||||| ||||||||||| || | ||||||||||||
Sbjct 838 TATGAGTTTAGGAAGTAAGGATGACGATAGAGGGAT-GG--G------TAGGAATCATGA 888
Query 854 TCAAGCAATGGGTGAGCATTCT-AAGTTTTGGGATCAAAGTGTTAATTTTTCTGCTGAGG 912
|||||||||||| ||||||||| ||| ||||| ||||||||||| |||||||||||||||
Sbjct 889 TCAAGCAATGGGCGAGCATTCTAAAG-TTTGGAATCAAAGTGTTGATTTTTCTGCTGAGG 947
Query 913 CTGATAGATTAAGGGGATTATCAATCCAGAATGATAGCAAGTTCAATCTTAGTCAACAAA 972
|| |||||||||||||||| || |||||||| || |||||||||||||||||||||||||
Sbjct 948 CTAATAGATTAAGGGGATTGTCTATCCAGAACGAGAGCAAGTTCAATCTTAGTCAACAAA 1007
Query 973 TAGATCATCCTGGACTACCTAAGGGTACAAGTCTTCATTCTGTATCAGCAGCTGATGCTG 1032
||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1008 TAGATCATCCTGGACCACCTAAGGGTGCAAGTCTACATTCTGTATCAGCAGCTGATGCTG 1067
Query 1033 CGGATTCCTTTTCGATGTTGAAAAAGGAAGCTCGTGGTGGAAGTGAACGTAAAGAGGAAT 1092
|||||||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||
Sbjct 1068 CGGATTCCTTTTCGATGTTGAACAAGGAAGCTCGTCGTGGAGGTGAACGTAGAGAGGAAT 1127
Query 1093 TGGGGCAGCTCAGTAAGGGAAAGAGGGAAGGCAATGCAAACTCTGGCACTGTTGATGACG 1152
|||||||||||||||||| ||||||||||||||||||||| || | |||||
Sbjct 1128 TGGGGCAGCTCAGTAAGGCAAAGAGGGAAGGCAATGCAAA--CT----C------TGACG 1175
Query 1153 AGATTGAGGATTTTGGGGAAGATATTGTTAAGTCTTTATTGCTTGAAGATGAAACTGGCG 1212
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1176 AGATTGAGGATTTTGGAGAAGATATTGTTAAGTCTTTATTGCTTGAAGATGAAACTGGTG 1235
Query 1213 ATAAGGACGCCAAAGATGGGAAGAAGGATAGCAAGACTTCTCGCGAGAAGGAATCGAGAA 1272
| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1236 AGAAGGATGCCAATGATGGGAAGAAGGATAGCAAGACTTCTCGCGAGAAGGAGTCGAGAG 1295
Query 1273 TGGACAATCGGGGTCAACGGCTGCTTGGCCAAAAGGCAAGAATGGTTAAAATGTATATGG 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TGGACAATCGGGGTCAACGGCTGCTTGGCCAAAAGGCAAGAATGGTTAAAATGTATATGG 1355
Query 1333 CATGTCGAAATGACATCCACAGGTATGATGCTTCATTCATTGCAGTCTACAAGTCCCTGA 1392
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1356 CATGTCGAAATGACATCCACAGGTATGATGCTACATTCATTGCAATCTACAAGTCCCTGA 1415
Query 1393 TTCCCGCAGAAGAGGAGCTGGAGAAGCAGAGACAACTAATGGCACATCTAGAGAATCTAG 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 TTCCCGCAGAAGAGGAGCTGGAGAAGCAGAGACAACTAATGGCACATCTAGAGAATCTAG 1475
Query 1453 TTGCCAAAGAATGGCCTCATGCAAAGTTGTATCTTTACGGGTCCTGTGCTAACTCTTTTG 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 TTGCCAAAGAATGGCCTCATGCAAAGTTGTATCTTTACGGGTCCTGTGCTAACTCTTTTG 1535
Query 1513 GTTTTCCGAAGAGCGACATCGATGTTTGCCTTGCAATCGAAGGTGATGATATCAACAAAT 1572
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1536 GTTTCCCGAAGAGCGACATCGACGTTTGCCTTGCAATCGAAGGTGATGATATCAACAAAT 1595
Query 1573 CTGAGATGTTGTTAAAGTTGGCGGAGATGTTGGAATCAGATAATCTCCAAAATGTTCAGG 1632
||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1596 CTGAGATGTTGTTAAAGCTGGCAGAGATCTTGGAATCAGATAATCTCCAAAATGTTCAGG 1655
Query 1633 CACTAACACGAGCTAGGGTTCCAATTGTAAAACTTATGGATCCGGTTACTGGGATATCTT 1692
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 CTCTAACACGAGCTAGGGTTCCAATTGTAAAACTTATGGATCCGGTTACTGGGATATCTT 1715
Query 1693 GTGATATCTGCATCAACAATGTATTGGCTGTTGTGAACACAAAGCTTTTGCGAGATTATG 1752
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1716 GTGATATCTGCATCAACAATGTATTGGCTGTTGTGAACACAAAGCTCTTGCGAGATTATG 1775
Query 1753 CGCAGATAGATGTGCGTTTAAGGCAGTTGGCTTTCATTGTGAAACATTGGGCAAAGTCAA 1812
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 CTCAGATAGATGTTCGTTTAAGGCAGTTGGCTTTCATTGTGAAACATTGGGCAAAGTCAA 1835
Query 1813 GAAGGGTTAATGAAACATATCAAGGAACACTTTCCAGCTACGCGTACGTTCTGATGTGCA 1872
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1836 GAAGGGTTAATGAAACTTATCAAGGAACACTTTCCAGCTACGCGTACGTTCTGATGTGTA 1895
Query 1873 TCCATTTCTTGCAGCAGCGTAGGCCACCGATTCTTCCTTGCTTACAGGAAATGGAGCCGA 1932
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1896 TCCATTTCTTGCAGCAGCGTAGGCCGCCAATTCTTCCTTGCTTACAGGAAATGGAGCCGA 1955
Query 1933 CTTACTCAGTTCGGGTAGATAATATCCGGTGCGCATACTTTGATAATGTTGATAGACTCC 1992
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1956 CTTACTCAGTTCGGGTAGATAATATCCGGTGCACATACTTTGATAATGTTGATAGACTCC 2015
Query 1993 GTAACTTCGGATCAAGTAACAGGGAGACCATAGCTGAGCTGGTGTGGGGATTCTTCAACT 2052
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2016 GTAACTTCGGATCAAACAACAGGGAGACCATAGCTGAGCTGGTCTGGGGATTCTTCAACT 2075
Query 2053 ACTGGGCTTACGCTCATGACTATGCGTATAATGTTGTATCCGTCCGCACCGGTTCCATAC 2112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2076 ACTGGGCTTACGCTCATGACTATGCGTATAATGTTGTATCCGTCCGCACCGGTTCCATAC 2135
Query 2113 TTGGGAAGCGAGAGAAGGACTGGACGAGAAGGGTGGGGAACGACAGACACTTGATATGCA 2172
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2136 TTGGGAAGCGAGAGAAGGACTGGACGAGAAGGGTGGGGAACGATAGGCACTTGATATGCA 2195
Query 2173 TAGAGGATCCGTTTGAGACGAGCCATGATCTGGGTCGGGTGGTCGACAAGTTTAGTATCC 2232
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2196 TAGAGGATCCGTTTGAGACGAGCCATGATCTGGGTAGGGTGGTCGACAAGTTTAGTATCA 2255
Query 2233 GAGTGTTGAGGGAAGAGTTTGAACGAGCTGCAAGGATTATGCATCAAGAACCTAACCCAT 2292
||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 2256 GAGTGTTGAGGGAGGAGTTCGAAAGAGCTGCAAGGATTATGCATCAAGATCCTAACCCAT 2315
Query 2293 GTGCCAAGCTTTTCGAACCATATATTCCTGGAGATAATAATGGACAAGGCAACAACTAAA 2352
||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 2316 GTGCCAAGCTTTTGGAACCATATATTCCTGAAGATAATAATGGACAAGGCCACAACTGAA 2375
Query 2353 CCTTGAAAACATTTGAAT--CGGATTCGTGTGGCTTGTATATATTTATGTATGGGTAGAA 2410
| || ||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 2376 CTTTTAAAACATTTGAATGGCGGATTCGTGTGGCTTGTATATATTTATG---GG-TAGAA 2431
Query 2411 GGTTCCGGCTCTGTTCTTTTTGCTTTTT-GGTT-TGATTTGGAATCTTGCTTGTGACCCA 2468
| ||| ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||
Sbjct 2432 GATTCATGCTCTGTTCTTTTTGCTTTTTTGGTTGTGATTTGAAATCTTGCTTGTGACCCA 2491
Query 2469 ACAA 2472
||||
Sbjct 2492 ACAA 2495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122658175635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5