BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483701
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45650.1 | Symbols: AGL6 | AGAMOUS-like 6 | chr2:18804350-18... 1382 0.0
> AT2G45650.1 | Symbols: AGL6 | AGAMOUS-like 6 | chr2:18804350-18806522
FORWARD LENGTH=1093
Length=1093
Score = 1382 bits (748), Expect = 0.0
Identities = 823/857 (96%), Gaps = 13/857 (2%)
Strand=Plus/Plus
Query 1 aagaagaaatcagaatcaagagaaggagagagaaagatgggaagagggagagtggagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 AAGAAGAAATCAGAATCAAGAGAAGGAGAGAGAAAGATGGGAAGAGGGAGAGTGGAGATG 127
Query 61 aagaggatagagaacaagatTAATAGACAAGTGACCTTCTCAAAAAGAAGAAACGGTTTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 AAGAGGATAGAGAACAAGATTAATAGACAAGTGACCTTCTCAAAAAGAAGAAACGGTTTG 187
Query 121 CTGAAGAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCCGAAGTTGCTCTCATCATCTTC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 188 CTGAAGAAAGCTTATGAGCTTTCTGTTCTTTGCGATGCCGAAGTTGCTCTCATCATCTTC 247
Query 181 TCAAGCCGTGGCAAGCTCTACGAGTTCGGTAGTGTTGGAATTGCAAGAACAATCGAACGG 240
|||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||
Sbjct 248 TCAAGCCGTGGCAAGCTCTACGAGTTTGGTAGTGTTGGAATTGAAAGCACAATCGAACGG 307
Query 241 TATAACCGTTGTTACAACTG-TACTCTAAGCAATAATAAGCCTGAAGAGACTACACAGAG 299
||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 308 TATAATCGTTGTTACAACTGCT-CTCTAAGCAATAATAAGCCTGAAGAGACTACACAGAG 366
Query 300 TTGGTGTCAGGAGGTGACAAAGCTTAAATCCAAATACGAATCTCTTGTTCGCACTAATAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 367 TTGGTGTCAGGAGGTGACAAAGCTTAAATCCAAATACGAATCTCTTGTTCGTACTAACAG 426
Query 360 GAATTTGCTTGGAGAAGATCTTGGAGAAATGGGTGTGAAGGAACTGCAAGCGCTCGAGAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GAATTTGCTTGGAGAAGATCTTGGAGAAATGGGTGTGAAGGAACTGCAAGCGCTCGAGAG 486
Query 420 GCAGCTCGAAGCCGCTCTTACCGCGACTCGACAGCGCAAGACACAAGTTATGATGGAAGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GCAGCTCGAAGCCGCTCTTACCGCGACTCGACAGCGCAAGACACAAGTTATGATGGAAGA 546
Query 480 AATGGAAGATCTTAGGAAAAAGGAGAGGCAACTAGGAGACATAAACAAACAACTCAAGAT 539
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AATGGAAGACCTTAGGAAAAAGGAGAGGCAACTAGGAGACATAAACAAACAACTCAAGAT 606
Query 540 TAAGTTTGAGACGGAAGGCCATGCTTTCAAAACGTTTCAAGACTTATGGGCAAACTCGGC 599
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 607 TAAGTTTGAAACGGAAGGCCATGCTTTCAAAACCTTTCAAGACTTATGGGCAAACTCGGC 666
Query 600 GGC--CGG-GG------ATCGAAACAATTCTGAATTTCCGGTTGAGCCTTCTCATCCTAT 650
||| ||| || ||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 667 GGCATCGGTGGCCGGGGATCCAAACAATTCTGAATTTCCGGTAGAGCCTTCTCATCCTAA 726
Query 651 T-TCACTGGATTGCAACACCGAACCCTTTTTACAAATAGGGTTTCAACAGCATTACTACG 709
| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 727 TGT-ATTGGATTGCAACACCGAACCCTTTTTACAAATAGGGTTTCAACAACATTACTACG 785
Query 710 TGCAAGGTGAAGGGTCTTCAGTATCAAAGAGCAACGTGGCAGGTGAGACCAATTTCGTCC 769
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 786 TGCAAGGTGAAGGGTCTTCGGTATCAAAGAGTAACGTGGCAGGTGAGACTAATTTCGTCC 845
Query 770 AAGGTTGGGTTCTTTGACTCTCTGTTGATTAGACCACGATCCCACGGTCAGGCCAATTTC 829
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 846 AAGGTTGGGTTCTTTGACTCTCTGTTGATTAGACCACGATGCCACGGTCAGGCCAATTTC 905
Query 830 AGCTCTCTGCAGTCGTT 846
|||||||| |||| |||
Sbjct 906 AGCTCTCTACAGTTGTT 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46617288416
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5