BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483706
Length=1442
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45690.1 | Symbols: SSE1, SSE, PEX16, ATPEX16 | shrunken see... 2015 0.0
> AT2G45690.1 | Symbols: SSE1, SSE, PEX16, ATPEX16 | shrunken seed
protein (SSE1) | chr2:18823171-18825735 REVERSE LENGTH=1532
Length=1532
Score = 2015 bits (1091), Expect = 0.0
Identities = 1346/1460 (92%), Gaps = 53/1460 (4%)
Strand=Plus/Plus
Query 24 GTGAATGGAATTTTCTTGTTTCCCAATTTCTTCTGTGAAATAG-AAA----A-------- 70
|||||||||||||| |||||||||||||||||||| ||||||| ||| |
Sbjct 56 GTGAATGGAATTTTGTTGTTTCCCAATTTCTTCTGAGAAATAGCAAAGTTCAGTTTTGTT 115
Query 71 TCT-T-TATCTGAAGCTCAATGGAAGCTTATAAGCAATGGGTTTGGAGAAATAGAGAGTA 128
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 TCTCTCTATCTGAAGCTCAATGGAAGCTTATAAGCAATGGGTTTGGAGAAATAGAGAGTA 175
Query 129 TGTACATTCCTTAGGATCCTTTGCCAACGGATTGACATGGCTGCTTCCTGAGAAGTTTTC 188
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TGTACAATCCTTTGGATCCTTTGCCAACGGATTGACATGGCTGCTTCCTGAGAAGTTTTC 235
Query 189 TGCTTCAGAGATTGGACCAGAAGCAGTAACGGCTTTTTTGGGCATATTCACAACTATCAA 248
||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 236 TGCTTCAGAGATTGGACCAGAAGCAGTAACGGCTTTTTTGGGCATATTCTCAACGATAAA 295
Query 249 TGAACACATCATTGAAAATGCTCCAACACCTCGTGGCCTTGTTGAATCTTCTGGGAATGA 308
||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||||||||
Sbjct 296 TGAACACATAATTGAAAATGCTCCAACACCTCGTGGCCATGTTGGATCTTCCGGGAATGA 355
Query 309 TCCATCCCTTTCTTATCCGCTACTCATCGCCATCCTAAAGGATTTGGAAACTGTTGTGGA 368
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 356 TCCATCCCTTTCTTATCCACTACTCATCGCCATCCTCAAGGATTTGGAAACTGTTGTGGA 415
Query 369 AGTGGCAGCTGAACACTTCTATGGAGACAAAAAATGGAACTACATTATTCTCACTGAAGC 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGTGGCAGCTGAACACTTCTATGGAGACAAAAAATGGAACTACATTATTCTCACTGAAGC 475
Query 429 TATGAAGGCTGTCATTAGGTTAGCCTTGTTTCGGAATAGTGGGTATAAGATGCTTCTTCA 488
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 476 TATGAAGGCTGTCATTAGGTTAGCCTTGTTCCGGAATAGTGGGTATAAGATGCTTCTTCA 535
Query 489 AGGAGGGGAAACACCTAACGAGGAGAAAGATTCTGACCAATCCGAGTCGCAAATTAGAGC 548
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||
Sbjct 536 AGGAGGGGAAACACCTAATGAGGAGAAAGATTCTAACCAATCCGAGTCGCAAAATAGAGC 595
Query 549 TGGTAATTTAGGTAGAAATCTCGGGCCTCATAGTCTTGGAAATCAAAATCATCATAATCC 608
|||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 596 TGGTAATTCGGGTAGAAATCTCGGGCCTCATGGTCTTGGAAACCAAAATCATCATAATCC 655
Query 609 ATGGAACTTGGAAGGACGGGCGATGTCAGCTTTAAGTTCATTTGGTCAGAATGCAAGAAC 668
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 656 ATGGAACTTGGAAGGACGGGCGATGTCTGCTTTAAGTTCATTTGGTCAGAATGCAAGAAC 715
Query 669 AACAACAACATCTTCTACCTCCGGTTGGTCTCGAAGAATTCAACATCAGCAAGCGGTTAT 728
||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 716 AACAACA---TCTTCTACCCCCGGTTGGTCTCGAAGAATTCAACATCAGCAAGCAGTTAT 772
Query 729 AGAGCCTCCAATGATCAAGGAGAGGCGAAGAACGCTCTCCGATCTACT-ATCTGAAAAGG 787
|||||||||||||||||||||||||||||||||| | ||||| ||||| | |||| ||||
Sbjct 773 AGAGCCTCCAATGATCAAGGAGAGGCGAAGAACGATGTCCGAGCTACTTA-CTGAGAAGG 831
Query 788 GTGTTAATGGAGCGTTGTTTGCAATGGGTGAGGTTCTTTACATAACGAGACCGCTCATTT 847
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 832 GTGTTAATGGAGCGTTGTTTGCGATTGGTGAGGTTCTTTACATAACGAGACCGCTCATTT 891
Query 848 ACGTTCTTTTCATCAGAAAATATGGAGTCAGATCTTGGATTCCTTGGGCTATATCGCTTT 907
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 892 ACGTTCTTTTCATCAGAAAATATGGAGTCCGATCTTGGATTCCTTGGGCTATATCGCTTT 951
Query 908 CTGTGGACACATTGGGAATGGGTATTCTTGCAAATTCGAAATGGTGGGGAGAGAAGAGCA 967
||||||||||| |||| |||||| |||||||||||||||| |||||||||||||||||||
Sbjct 952 CTGTGGACACACTGGGGATGGGTCTTCTTGCAAATTCGAAGTGGTGGGGAGAGAAGAGCA 1011
Query 968 AGCAAGTCCATTTCTCAGGACTTGAAAGGGATGAGCTGAGGAGACGAAAGCTGCTATGGG 1027
||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||
Sbjct 1012 AGCAAGTCCATTTCTCAGGACCTGAAAAGGATGAGCTGAGGAGACGAAAACTGATATGGG 1071
Query 1028 CATTGTACCTCATGAGAGATCCATTCTTCACCAAGTACACAAGGCAGAAGCTGGAAAGCT 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 CATTGTACCTCATGAGAGATCCATTCTTCACCAAGTACACAAGGCAGAAGCTGGAAAGCT 1131
Query 1088 CTCAAAAGAAGCTGGAACCAATTCCATTGATCGGATTCCTCACAGAGAAGATTGTGGAGC 1147
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1132 CTCAAAAGAAGCTGGAACTAATTCCATTGATCGGATTCCTCACAGAGAAAATTGTGGAGC 1191
Query 1148 TTTTGGAGGGAGCTCAGTCACGGTACACTTACATATCGGGATCGTGAGGCTAAGCGTTT- 1206
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1192 TTTTGGAGGGAGCTCAGTCACGGTACACTTACATATCGGGATCGTGAGGTTAAGCGTTTT 1251
Query 1207 ACTTATGGTTTTTACGCAACTGAAGAATATCCCCATTGTTGGAATGCTTTT-CTAGATCT 1265
||||||||||| || ||||| ||||||||| ||||||||||||||||||| | |||||
Sbjct 1252 ACTTATGGTTTATATGCAACGGAAGAATATTGCCATTGTTGGAATGCTTTTTC-AGATCA 1310
Query 1266 TTGAAGGCTCCT---G-TTTC--AGG---------C----TTTTGTAAGAAATTGTGTTT 1306
| ||||||||| | |||| ||| | |||||| |||||||||||||
Sbjct 1311 TCAAAGGCTCCTACAGATTTCTTAGGGAATGGTTTCAGGCTTTTGTTAGAAATTGTGTTT 1370
Query 1307 ATTGCA---GTTAGAGAACATAACAATGGACAGATGCATCTGATGAGATAAGCTTCTCTG 1363
|||||| | ||||||||||||| || |||||||| |||||| |||||||||||||||
Sbjct 1371 ATTGCAACAGGTAGAGAACATAACCATAGACAGATGTATCTGAAGAGATAAGCTTCTCTA 1430
Query 1364 TGTCTAAAGAAACG-ACCAATACGAACAAAACAAGCATCATTAATGCAGGATGATTAAAT 1422
|||||||||||| | ||| ||||||| ||||||||||||||||| || || | ||||
Sbjct 1431 TGTCTAAAGAAATGGACCGATACGAATAAAACAAGCATCATTAA---AG-AT--T-AAAT 1483
Query 1423 GGTTTGTCAGAAATACTACA 1442
||||||| ||||||||||||
Sbjct 1484 GGTTTGTAAGAAATACTACA 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71083971720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5