BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483707
Length=2300
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45700.1 | Symbols: | sterile alpha motif (SAM) domain-cont... 3456 0.0
> AT2G45700.1 | Symbols: | sterile alpha motif (SAM) domain-containing
protein | chr2:18827000-18830528 REVERSE LENGTH=2411
Length=2411
Score = 3456 bits (1871), Expect = 0.0
Identities = 2173/2316 (94%), Gaps = 32/2316 (1%)
Strand=Plus/Plus
Query 1 AATGTCGAACACCGTCGAAGATGACGATGACGACTTCCAGATCCCTCCTTCCTCACAGCT 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 23 AATGTCGAACACCGTCGAAGATGACGACGACGACTTCCAGATCCCTCCTTCCTCACAGCT 82
Query 61 TTCCATTCGAAGACCTCTTCAACCTACCAACGCTAACAACTTCTCTCACCGCCGCCCTCC 120
||| ||||||| ||||||||| || ||||||||||||||| ||||||| |||||||||
Sbjct 83 TTCGATTCGAAAACCTCTTCACCCAACCAACGCTAACAACATCTCTCA---CCGCCCTCC 139
Query 121 AAACAAAAAGCCCAGACTCAGCCGTAATCCTGGTAAGGAGAATGTGACTCCGCCTCCGTC 180
|||||||||||||||||| ||||| | || ||||| || ||||||||||||||||| ||
Sbjct 140 TAACAAAAAGCCCAGACTCTGCCGTTACCCGGGTAAAGAAAATGTGACTCCGCCTCCTTC 199
Query 181 TCCGGGTGCAGATCTGTTATGCTCCTCTTCTACTCCACACTGTAGCTTAGATTGTATCCC 240
||||| | | ||||| || ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 200 TCCGGATCCGGATCTCTTCTGCTCCTCTTCTACTCCTCACTGTATCTTAGATTGTATCCC 259
Query 241 ATCTAGTGTTGATTG--CTCT-----A--T---TGGTCCAATTTCTTCTCTCGGTGAAGA 288
||||||||||||||| |||| | | |||||||||||||||||| ||||||||
Sbjct 260 ATCTAGTGTTGATTGCTCTCTAGGAGATTTCAATGGTCCAATTTCTTCTCTTGGTGAAGA 319
Query 289 CGATAAAGTGGATAAGGACGACTGTATAAAGATGAATCGTGAAGGTTATTTGTGTAATTC 348
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 320 AGATAAAGAGGATAAGGACGACTGTATAAAGGTGAATCGTGAAGGTTATTTGTGTAATTC 379
Query 349 GATGGAGGCTAGGTTATTGAAATCTAGAATTCGTCTCGGGTTGGATTGTGGAATCCATGA 408
|||||||||||||||||||||||| |||||| |||||||||| ||| |||||||||||||
Sbjct 380 GATGGAGGCTAGGTTATTGAAATCGAGAATTTGTCTCGGGTTTGATAGTGGAATCCATGA 439
Query 409 GGATGATGAAGAG-TTTGTTGAGTCCAACTCTGAGCTTGATGTGTTGATAAAGCTTTGCT 467
||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 440 GGATGATGAAG-GTTTTGTTGAGTCTAACTCTGAGCTTGATGTGTTGATAAACCTTTGCT 498
Query 468 CTGAGTCTGAGGGTAGGAGTGGAGAGTGTAGTTTAGGCAATGATGATTCGATTCAGTGTC 527
||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| || |
Sbjct 499 CTGAGTCTGAGGGTAGGAGTGGAGAGTTTAGTTTAGGCAAGGATGATTCAATTCAATGCC 558
Query 528 CATTGTGTTCAATGGATATTTCAGCTTTGAGTGAAGAGCAAAGGCAAGTTCATAGCAATA 587
|||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 559 CATTGTGTTCCATGGATATTTCATCTTTGAGTGAAGAGCAGAGGCAAGTTCATAGCAATA 618
Query 588 CTTGTCTTGATAAGTCATATGATCAGCCTCCTGAGCAAGACTCCTTGAGGAAATGCGATA 647
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
Sbjct 619 CTTGTCTTGATAAGTCATATAATCAGCCTTCTGAGCAAGACTCCTTGAGGAAATGCGAAA 678
Query 648 ATTCGTCTTCTCTTATTGAAGAATCGACTGATGATCCAGTTCAGCTTCCTCAGCTAGTTA 707
||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 679 ATTTGTCTTCTCTTATAAAAGAATCGATTGATGATCCAGTTCAGCTTCCTCAGCTAGTTA 738
Query 708 CTGACCTGTCTCCAGTGCTTAAATGGCTTAGGAGTCTAGGTTTAGCTAAATATGAAGATG 767
| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 739 CCGACTTGTCTCCAGTGCTGAAATGGCTTAGGAGTCTAGGTTTAGCTAAATATGAAGATG 798
Query 768 TTTTTATTCGTGAAGAGATCGACTGGGATACCCTTCATTCACTCACTGAGGAGGATCTTC 827
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 799 TTTTTATTCGTGAAGAGATCGACTGGGATACCCTTCAGTCACTCACTGAGGAGGATCTTC 858
Query 828 TAAGCATAGGTATCACGTCACTTGGTCCCAGAAAGAAGATTGTGAATGCACTTTGCGGAC 887
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 859 TAAGCATAGGTATCACGTCACTTGGTCCCAGAAAGAAGATTGTGAATGCACTTAGCGGAG 918
Query 888 TTAGAGAACCCTTTGCATCTTCAGCTGAAGCACATGCACAGTCTCATTGTACAAGTGGCC 947
||||||| |||||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct 919 TTAGAGATCCCTTTGCATCTTCTGCTGAAGTGCAGGCACAGTCTCATTGTACAAGTGGCC 978
Query 948 ATGTTACAGAGAGACGGAGGGACAAGTCAACCAATCGTTGGGCAAGTGAACCCAAAAAAC 1007
||||||||||||||| ||| || |||||||||| |||| ||||||||| ||||||||||
Sbjct 979 ATGTTACAGAGAGACAGAGAGATAAGTCAACCACTCGTAAGGCAAGTGAGCCCAAAAAAC 1038
Query 1008 CAACTGCAAACAAGTTGATTACTGAATTTTTCCCTGGTCAGGCTACCGAGGGTA-TGAAG 1066
|||||||||||||||||||||| || |||||||||||||||||||||||||| | | |||
Sbjct 1039 CAACTGCAAACAAGTTGATTACAGAGTTTTTCCCTGGTCAGGCTACCGAGGGCACT-AAG 1097
Query 1067 ATCC-GAAAGGCCCCTAAAGAACCTGTCGTAGAAAGGAGTCCATCAGATT-TAAACTCTA 1124
|||| || | |||||| | ||||||||| ||||| |||||||||||||| | | |||||
Sbjct 1098 ATCCGGACA-GCCCCT--A-AACCTGTCGCAGAAAAGAGTCCATCAGATTCT-AGCTCTA 1152
Query 1125 GACGTGCTGTGAGAAGAAATGGCAACAATGGAAAATCTAAAGTCATTCCACATTGGAATT 1184
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1153 GACGTGCTGTGAGAAGAAATGGCAACAACGGAAAATCTAAAGTTATTCCACATTGGAATT 1212
Query 1185 GCATTCCAGGGACACCTTTTCGAGTGGACGCATTCAAGTACCTCACACGCGATTGTTGCC 1244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GCATTCCGGGGACACCTTTTCGAGTGGACGCATTCAAGTACCTCACACGCGATTGTTGCC 1272
Query 1245 ATTGGTTTCTTACACACTTTCATCTCGATCATTATCAAGGTCTGACAAAGTCATTTAGTC 1304
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1273 ACTGGTTTCTTACACACTTTCATCTCGATCATTATCAAGGTTTGACAAAGTCATTTAGTC 1332
Query 1305 ATGGGAAGATATACTGTTCCTTAGTTACCGCAAAGTTGGTAAATATGAAGATTGGGATCC 1364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1333 ATGGGAAGATATACTGTTCCTTAGTTACCGCAAAGTTGGTAAATATGAAGATTGGGATAC 1392
Query 1365 CTTGGGAGAGACTGCAAGTCCTGGACCTTGGCCAGAAGGTTAATATTGCGGGCATTGATG 1424
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1393 CTTGGGAGAGACTGCAAGTCCTGGACCTTGGCCAGAAGGTTAATATTTCAGGCATTGATG 1452
Query 1425 TGACATGCGTTGATGCAAACCACTGTCCGGGATCCATCATGATACTCTTTGAACCAGCCA 1484
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 TGACATGCTTTGATGCAAACCACTGTCCGGGATCCATCATGATACTCTTTGAACCAGCCA 1512
Query 1485 ACGGTAAGGCTGTTCTACATACGGGTGATTTTCGCTATAGGGAAGAGATGTCAGATTGGC 1544
||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||||
Sbjct 1513 ACGGTAAGGCTGTTCTACATACGGGGGATTTCCGCTATAGTGAAGAGATGTCAAATTGGT 1572
Query 1545 TCATTGGATCGCATATCAACTCTCTTATTCTTGATACTACATACTGTAACCCCCAGTATG 1604
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 TGATTGGATCGCATATCAGCTCTCTTATTCTTGATACTACATACTGTAACCCCCAGTATG 1632
Query 1605 ACTTTCCAAAGCAAGAGGCGGTAATACAGTTTGTTGTTGAGGCTATTCAAGCAGAAGCAT 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 ACTTTCCAAAGCAAGAGGCGGTAATACAGTTTGTTGTTGAGGCTATTCAAGCAGAAGCAT 1692
Query 1665 TTAATCCCAAGACCCTTTTCTTAATTGGAAGCTACACCATCGGAAAGGAGAGGCTGTTCT 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 TTAATCCCAAGACCCTTTTCTTAATTGGAAGCTACACCATCGGAAAGGAGAGGCTGTTCT 1752
Query 1725 TGGAAGTTGCACGTGTGCTACGGGAAAAGATATACATCAATCCTTCAAAACTAAAACTCC 1784
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1753 TGGAAGTTGCACGTGTGCTACGGGAAAAGATATACATCAATCCTGCGAAACTAAAACTCC 1812
Query 1785 TCGAGTGCTTGGGATTCTCAAAGGACGATATGCAGTGGTTTACAGTGAAGGAAGAGGAGA 1844
||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 1813 TCGAGTGTTTGGGATTCTCAAAGGATGATATACAGTGGTTTACAGTGAAGGAAGAGGAAA 1872
Query 1845 GCCACATTCACATTGTGCCCTTGTGGACGCTTGCCAGTTTCAAACGGCTGAAGCATATAG 1904
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1873 GCCACATTCACGTTGTGCCTTTGTGGACGCTTGCCAGTTTCAAACGGCTGAAGCATGTAG 1932
Query 1905 CTAACCGATACACAAACCGTTACAGCCTTATCGTTACCTTTTCTCCTACTGGTTGGACAT 1964
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1933 CTAACCGATACACAAACCGTTACAGCCTTATCGTTGCATTTTCTCCTACTGGTTGGACAT 1992
Query 1965 CTGGTAAGACTAAGAAGAAGTCCCCAGGAAGAAGGTTGCAACAGGGTACAATAATAAGGT 2024
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 CTGGTAAGACTAAAAAGAAGTCCCCAGGAAGAAGGTTGCAACAGGGTACAATAATAAGGT 2052
Query 2025 ACGAGGTTCCTTACAGTGAGCATAGCAGCTTCACAGAGCTAAAAGAGTTTGTGCAAAAAG 2084
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2053 ACGAGGTTCCTTACAGTGAGCATAGCAGCTTCACGGAGCTAAAAGAGTTTGTGCAAAAAG 2112
Query 2085 CGTCGCCTGAAGTTATCATACCGAGTGTAAACAACGATGGACCTGACTCTGCAGCTGCAA 2144
||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2113 TGTCACCTGAAGTCATCATACCGAGTGTAAACAATGATGGACCTGACTCTGCAGCTGCAA 2172
Query 2145 TGGTGTCTTTGTTGGTTACGTAGAACTGTGTTTTACATCTGCGATAAGCTTAAGTTTGCA 2204
||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 2173 TGGTGTCTTTGTTGGTTACGTAGAACTGTGTTT-ACATCTGCGATAAGCTT---T--GCA 2226
Query 2205 ACTAAAAGGCAGCCTCCTTGGCTACCAATTGAGCAGAGCCGTCAAAGATCTACGACGAAA 2264
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 2227 ACAAAAAGGCAGCCTCCTTGACTACCAATTGAGCAGAGACGTCAAAGATCTACAACGAAA 2286
Query 2265 TTAGATATGTTACGTTCTATCTAATTGTAGTTATGT 2300
| ||||||||| |||||||||||||||||||||||
Sbjct 2287 ATGGATATGTTATGTTCTATCTAATTGTAGTTATGT 2322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114156039330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5