BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483708
Length=1927
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45720.1 | Symbols: | ARM repeat superfamily protein | chr2... 2907 0.0
> AT2G45720.1 | Symbols: | ARM repeat superfamily protein | chr2:18833364-18836291
FORWARD LENGTH=2039
Length=2039
Score = 2907 bits (1574), Expect = 0.0
Identities = 1745/1830 (95%), Gaps = 2/1830 (0%)
Strand=Plus/Plus
Query 99 AACCCAGAAGCTAAAGCATAGATCTTTCTTTCCAGTGCTACAGAGTTCAAGGATTGTATT 158
|||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||||
Sbjct 145 AACCCAGAAGCTGAAGCATAGATCTTTGTTTCCAGTGCTACGGAGTGCAAGGATTGTATT 204
Query 159 TGTGTGTGATCATGGTGGAGCAGATAACTGGAAACGAAACTCTGGTTGACCCAACAGTTG 218
|||||||||||||||||||| ||| ||| ||||||| ||||| |||| | ||||||||
Sbjct 205 TGTGTGTGATCATGGTGGAGGAGAAAACGGGAAACGTGACTCTACTTGATCAAACAGTTG 264
Query 219 AAGATTTGTTATTACAGGCACAAGAGCTTGTACCGATGGCTTTGTCCAAAGCAAGAACAG 278
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 265 AAGATTTGTTATTACAGGCACAAGAGCTTGTACCGATCGCTTTGTCCAAAGCAAGAACAG 324
Query 279 TGAAAGGTTTCTCAAGCAGATGGAGAGTGATTATTTCAAGATTAGAGAAAATACCGACAT 338
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 325 TGAAAGGTTTCTCAAGCAGATGGAGAGTGATCATTTCAAGATTAGAGAAGATACCGACAT 384
Query 339 GTTTATCGGATTTGTCTAGCCATCCTTGCTTCTCTAAACACACTCTATGCAAAGAGCAAC 398
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 385 GTTTATCGGATTTGTCTAGCCATCCTTGCTTCTCTAAGCACACTCTATGCAAAGAGCAAC 444
Query 399 TTCAAGCGGTCTTAGAAACTTTGAAAGAAGCCATCGAGCTCGCTAATGTTTGCGTAAGTG 458
||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 445 TTCAAGCAGTCTTAGAAACTTTGAAAGAAACCATCGAGCTCGCGAATGTTTGCGTAAGTG 504
Query 459 CGAAGCAAGAGGGGAAGTTAAAGATGCAGAGTGATCTAGATTCTCTATCTGCCAAAATTG 518
||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||
Sbjct 505 AGAAGCAAGAGGGGAAATTGAAGATGCAGAGTGATCTAGATTCTCTATCTGCGAAGATTG 564
Query 519 ATCTTAGCTTGAAAGATTGTGGATTGCTTATGAAAACAGGTGTTCTTGGAGAAGTTACAA 578
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 565 ATCTTAGCTTGAAAGATTGTGGATTGCTAATGAAAACAGGTGTTCTTGGAGAAGTTACGA 624
Query 579 AAACTTTATCTTCTTCGACTGAAGACTTGGAAACGTTTAGCGTCAGAGAATTGCTTGCTC 638
|| ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct 625 AACCTTTATCTTCTTCGACTCAAGACTTGGAAACGTTCAGCGTTAGAGAATTGCTTGCTC 684
Query 639 GGCTTCAGATAGGTCACTTGGAGTCTAAACGCAAAGCGCTTGAGCAACTTGTAGAGGTAA 698
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 685 GGCTTCAGATAGGTCACTTGGAGTCTAAACGCAAAGCGCTTGAGCAGCTCGTCGAGGTAA 744
Query 699 TGAAAGAAGACGAAAAGGCGGTTATAACCGCTTTAGGTCGGACCAATGTCGCTTCTTTGG 758
|||||||||||||||||||||||||||||||| |||| || ||||| ||||| |||||||
Sbjct 745 TGAAAGAAGACGAAAAGGCGGTTATAACCGCTCTAGGCCGTACCAACGTCGCGTCTTTGG 804
Query 759 TGCAGCTTTTGACTGCTACTTCGCCTAGCGTAAGGGAAAACGCGGTGACTGTGATCTGCT 818
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TGCAGCTTTTGACGGCTACCTCGCCTAGCGTAAGGGAAAACGCGGTGACTGTGATCTGCT 864
Query 819 CTCTAGCGGAATCAGGCGGATGCGAAAACTGGCTTATCTCTGAGAACGCATTGCCTCCAT 878
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 865 CTCTAGCGGAATCAGGCGGATGCGAAAACTGGCTTATCTCTGAGAACGCATTGCCTTCAT 924
Query 879 TGATACGGCTACTAGAATCGGGAAGTCCTGTTGCTAAGGAGAAAGCGGTTATTTCGTTGC 938
||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 925 TGATAAGGCTACTAGAATCAGGAAGTATTGTTGCTAAGGAGAAAGCGGTTATTTCGTTGC 984
Query 939 AGAGAATGTCGATTTCATCAGAGACATCGCGTTCCATTGTTGGTCACGGCGGGGTTAGTC 998
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 985 AGAGAATGTCTATTTCATCAGAGACATCGCGTTCAATTGTTGGTCACGGCGGGGTTGGTC 1044
Query 999 CGTTGATCGAGATTTGCAAAACAGGGGACTCTGTTTCTCAATCAGCTTCTGCTTGTACTT 1058
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1045 CGTTGATCGAGATTTGCAAAACAGGGGACTCTGTTTCTCAATCCGCTTCTGCTTGTACTT 1104
Query 1059 TAAAGAACATTTCCGCTGTGCCTGAAGTAAGACAGAATCTAGCTGAAGAAGGAATCGTTA 1118
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1105 TGAAGAACATTTCCGCTGTGCCTGAAGTAAGACAGAATCTAGCGGAAGAAGGAATCGTGA 1164
Query 1119 AAGTGATGATTAACATACTTAACTGCGGAATCCTATTGGGATCTAAAGAATACGCAGCGG 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 AAGTGATGATTAACATACTTAACTGCGGAATCCTATTGGGATCTAAAGAATACGCAGCGG 1224
Query 1179 AATGTCTTCAGAATCTCACTTCAAGCAACGAAACTCTTCGAAGATCGGTTATATCAGAGA 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 AATGTCTTCAGAATCTCACTTCAAGCAACGAAACTCTTCGAAGATCGGTTATATCAGAGA 1284
Query 1239 ATGGGATTCAAACTCTGCTAGCTTACTTAGACGGTCCTCTTCCTCAAGAATCAGGGGTTG 1298
| || || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1285 ACGGAATACAAACTCTGCTCGCTTACTTAGACGGTCCTCTTCCTCAAGAATCAGGAGTTG 1344
Query 1299 CAGCAA-TACGGAATCTTGTTGGCTCTGTTTCTGTAGAGACTTACTTCAAGATAATACCA 1357
|||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1345 CAGCAATTA-GGAATCTTGTTGGCTCTGTTTCTGTAGAGACTTACTTCAAGATAATCCCA 1403
Query 1358 AGTTTAGTCCATGTTCTTAAATCAGGATCAATCGGAGCTCAACAAGCGGCTGCATCAACT 1417
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 1404 AGTTTAGTCCATGTTCTTAAATCAGGTTCAATCGGAGCTCAGCAAGCGGCTGCGTCAACT 1463
Query 1418 ATCTGCAGGATAGCTACATCAAATGAGACGAAGAGAATGATCGGTGAATCAGGTTGTATC 1477
|| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1464 ATTTGCAGGATTGCTACCTCAAATGAGACAAAGAGAATGATCGGTGAATCAGGTTGTATC 1523
Query 1478 CCGTTGTTGATAAGAATGTTGGAGGCGAAAGCGAGTGGAGCTAGAGAGGTTGCTGCTCAA 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 CCGTTGTTGATAAGAATGTTGGAGGCGAAAGCGAGTGGAGCTAGAGAGGTTGCTGCTCAA 1583
Query 1538 GCTATAGCGAGTCTGGTTACGGTTCCAAGGAATTGCAGAGAAGTAAAGAGAGATGAGAAG 1597
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1584 GCTATAGCGAGTCTGGTTACGGTTCCAAGGAATTGCAGAGAAGTGAAGAGAGATGAGAAA 1643
Query 1598 AGTGTGACGAGTCTTGTGATGTTGCTTGAGCCGAGTCCGAGTAATTCTGCAAAGAAGTAT 1657
||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 1644 AGTGTGACGAGTCTTGTGATGTTGCTTGAGCCGAGTCCGGGTAACTCGGCAAAGAAGTAT 1703
Query 1658 GCGGTTTCGGGTTTGGCGGCTTTGTGTTCAAGCAGGAAGTGTAAGAAGCTGATGATCTCA 1717
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1704 GCGGTTTCGGGTTTGGCGGCTTTGTGTTCGAGCAGGAAGTGTAAGAAGCTGATGGTCTCA 1763
Query 1718 CATGGAGCTGTTGGTTATTTGAAGAAGTTGTCGGAGTTGGAGGTTCCTGGGTCAAAAAAG 1777
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 1764 CATGGAGCTGTTGGTTATTTGAAGAAGTTGTCGGAGTTGGAGGTTCCTGGTTCGAAGAAG 1823
Query 1778 CTTCTTGAAAGGATTGAGAAAGGGAAACTAAGAAGTTTCTTTAGTAGGAAGTAGAAGAAA 1837
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1824 CTTCTTGAAAGGATTGAGAAAGGGAAATTAAAAAGTTTCTTTAGTAGGAAGTAGAAGAAA 1883
Query 1838 ATGAAGCAACGTGGTATATATATAATGTATTTGATATGTTTCATACTCTGTATGAAACTC 1897
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1884 ATGAAGCAACGTGGTATATATATAATGTACTTGATATGTTTCATAATCTGTATGAAACTT 1943
Query 1898 GGCCAATGATATCTTGTTTGGTCACCGTAT 1927
||||||||||||||||||||| |||||||
Sbjct 1944 AGCCAATGATATCTTGTTTGGTGACCGTAT 1973
Score = 135 bits (73), Expect = 1e-30
Identities = 94/103 (91%), Gaps = 5/103 (5%)
Strand=Plus/Plus
Query 1 AAATCTAAAGCTGACTAAACGACCCTGACACAGCTC-CTTCTCTGTCTGAAAGAGAGT-T 58
||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||| |
Sbjct 1 AAATCTAAAGCTGACTAAACGACTCTGACACAGCTAACTTCTCTTTGTGAAAGAGAGTGT 60
Query 59 -T-CTGCTTTTGTTTTT-GATTCAATTTCGAAATTCAAAGTTC 98
| |||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CTTCTGCTTTTGTTTTTTGATTCAATTTCGAAATTCAAAGTTC 103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95431236045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5