BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483709
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45730.1 | Symbols: | eukaryotic initiation factor 3 gamma ... 2366 0.0
> AT2G45730.1 | Symbols: | eukaryotic initiation factor 3 gamma
subunit family protein | chr2:18836264-18839160 REVERSE LENGTH=1633
Length=1633
Score = 2366 bits (1281), Expect = 0.0
Identities = 1379/1427 (97%), Gaps = 3/1427 (0%)
Strand=Plus/Plus
Query 1 AACTAACCAAACATAACTGCAGTCTCttttttttGTTTCGATGGAACTCGATAAAGATCA 60
|||||||||||||||||||||||||| || ||||||||||||||||| |||| |||||
Sbjct 1 AACTAACCAAACATAACTGCAGTCTC---TTCTTGTTTCGATGGAACTCAATAAGGATCA 57
Query 61 GACAGTCATGTCGGAGGATAAAAAGCCTCAAGATCCAAATCCCAGATTTGCTTGCGAAGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GACAGTCATGTCGGAGGATAAAAAGCCTCAAGATCCAAATCCCAGATTTGCTTGCGAAGG 117
Query 121 TTGCAGCGTTTTGCTCGACGTCAACGATGGTGACCGTCTCGTCTTCGCTCGTTTATCTGG 180
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 118 TTGCAGCGTTCTGCTCGACATCAACGATGGTGACCGTCTCGTCTTCGCTCGTTTATCTAG 177
Query 181 TGGCGCTATATTAAAAATTGGGAATAAGAATTATTCTTTAAAGCCATTGATCGGAGCTCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGGCGCTATATTAAAAATTGGGAATAAGAATTATTCTTTAAAGCCATTGATCGGAGCTCC 237
Query 241 TTTTGGATCTCTGTTCCAAGTCGAAACCGGAGAAGATGGTTCTTTCCTCTCTCGCATTTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 238 GTTTGGATCTCTGTTCCAAGTCGAAACCGGAGAAGATGGTTCTTTCCTCTCTCGCATTCT 297
Query 301 TCCCATTAAACAAGAAAATAACAGTAATAATGTTATGGACGATTCGAGAGATAATCGGGA 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 298 TCCCATTAAACAAGAAAGTAACAGTAATAATGTTATGGACGATTCGAGAGATAATCGAGA 357
Query 361 AATCGTCGACAACAATGAAGCCCAGAACCTTACTGGTGAAGAAATTGAAGCTATGCGGAG 420
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 358 AATCGTCGACAATAATGAAGCTCAGAATCTTACTGGTGAAGAAATTGAAGCTATGCGGAG 417
Query 421 AGAGGGTGCAAAAGGGGATGAAATTATTGAAGCTCTAATTGCAAACAGCAAAACATTTGA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 418 AGAGGGTGCAAAAGGGGATGAAATTATTGAAGCTCTAATTGCAAACAGCAAAACTTTTGA 477
Query 481 TAAGAAGTTTCAGTTGTCTCAGGAAAAATATAAGCTTAAAAAGCAGAAGAAATATGCGCC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 478 TAAGAAGTTTCAGTTGTCTCAGGAAAAATATAAGCTTAAAAAGCAGAAGAAATATGCACC 537
Query 541 AAAGCTGCTTCTTCGACGGCCTTTTGCTCGAAGTATATGTGAAGCTTATTTCAAGAAATA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAAGCTGCTTCTTCGACGGCCTTTTGCTCGAAGTATATGTGAAGCTTATTTCAAGAAATA 597
Query 601 CCCAGCCAGAATTGGATTCTTACGAGTAGATGCGTTATCTCTTCTGTTAACAATGGCTAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 CCCAGCCAGAATTGGATTCTTACGAGTAGATGCGTTATCTCTTCTGTTAACGATGGCTAA 657
Query 661 TGTCACTGCATACTCGGATGTGCTTGTGGTGGATATGGTTGGTGGCCTTGTCACTGGTGC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TGTCACTGCATACTCGGATGTGCTTGTGGTGGATATGGTTGGTGGCCTTGTCACTGGTGC 717
Query 721 AGTGGCTGAAAGATTAGGAGGCACTGGTTATGTTTGCAATACATATAAGGGAAGTTCTCC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGTGGCTGAAAGATTAGGAGGCACTGGTTATGTTTGCAATACATATAAGGGAAGTTCTCC 777
Query 781 TTATCCTGTGGAGATGGTAAGGATGTTCAACTTTAGTGACAAGGTTTTAGAGAGGATCGT 840
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 778 TTATCCTGTGGAGATGGTAAGGATGTTCAACTTTAGTGACAAGGTTTTAAAGAGGATCGT 837
Query 841 GCAGTCATCGATAAACGAGCTCTCGTCAGCCAATACTGCGTCTCCTGAAGGAAACAATCA 900
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 838 GCAGTCATCGATAAACGAGCTCTCGTCAGCCAAAACTGCGTCTACTGAAGGAAACAATCA 897
Query 901 ACAAGAAGGAGTTTGTAACGCTGAGAACAATATTAATGCAACAGCTACATCTGATATTAT 960
||||||||||||||| || ||||||||||||||||||| |||||||||||||||| ||||
Sbjct 898 ACAAGAAGGAGTTTGCAAAGCTGAGAACAATATTAATGAAACAGCTACATCTGATGTTAT 957
Query 961 GGTAGAAGAAATATCTGCGACAACTGAGGCTGGAGTAGTAGATTTTGTTGTACCAGAGAG 1020
||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 958 GGTTGAAGAAATATCTGTGACAACTGAGGCTGGAGTAGTAGATATTGTTGTACCAGAGAG 1017
Query 1021 CAAAGTTATCAAAGCCGCAAAAGCTGGAGCCAAAGCTTCAAAAGAAACTATTGAGATGTG 1080
|||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1018 CAAAATTATCAAAGCCGCAAAAGCTGGAGCCAAAGCTTCAAAAGAAACAATAGAGATGTG 1077
Query 1081 GCGAGAAAACGGCTTTTCGAGCCTAATCATCGCTGCGCAAGACCAAGACCCATGGAGCAT 1140
|| ||||||||| |||||||| |||||||| ||||||||||||||||||||||||| | |
Sbjct 1078 GCAAGAAAACGGTTTTTCGAGTCTAATCATGGCTGCGCAAGACCAAGACCCATGGATCGT 1137
Query 1141 AGCTAAAGATGTATTGCCACTGCTGTCTTACTCTGCTCCCTTTGTAATATATCATCAGTA 1200
|||||| |||||||||||||| ||||| ||||||||||| |||| |||||||||||||||
Sbjct 1138 AGCTAAGGATGTATTGCCACTACTGTCCTACTCTGCTCCTTTTGCAATATATCATCAGTA 1197
Query 1201 TTTACAGCCGCTGGCGACATGTATGCACAAGCTTCAACAGGGGAAGATGGCGATCAATCT 1260
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1198 TTTACAGCCGCTGGCGACATGTATGCACAAGCTTCAACAGGGTAAAATGGCGATCAATCT 1257
Query 1261 GCAAATAACAGAACCATGGCTACGCGAATATCAGGTGCTTCCTTCAAGATCTCATCCTCA 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1258 GCAAATAACAGAACCATGGCTACGCGAATATCAGGTGCTTCCTTCAAGATCTCACCCTCA 1317
Query 1321 CATGCAGATGAGTTCTTTTGGAGGCTATGTTCTGAGTGGCATCAGAATCTCTACCACTTG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CATGCAGATGAGTTCTTTTGGAGGCTATGTTCTGAGTGGCATCAGAATCTCTACCACTTG 1377
Query 1381 ACTATTGTTTTCAAAACCAGAAACTGTGGTTTGATGTTTGGTCTTTT 1427
||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1378 ACTGTTGTTTTCATAACCAGAAACTGTGGTTTGATGTTTGGTCTTTT 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208438210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5