BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483710
Length=1064
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45740.1 | Symbols: PEX11D | peroxin 11D | chr2:18839716-188... 1421 0.0
> AT2G45740.1 | Symbols: PEX11D | peroxin 11D | chr2:18839716-18841403
FORWARD LENGTH=1161
Length=1161
Score = 1421 bits (769), Expect = 0.0
Identities = 924/992 (93%), Gaps = 37/992 (4%)
Strand=Plus/Plus
Query 110 AGTAGGTAGAAGAAGATGGGGACGACATTAGATGTGTCAAGAGCAGAGCTAGCACTTGTG 169
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 135 AGTAGGTAGAAGAAGATGGGGACGACGTTAGATGTATCAAGAGCAGAGCTAGCACTTGTG 194
Query 170 GTAATGTATTTGAACAAAGCAGAGGCAAGGGATAAGTTATGCAGAGCGATACAGTATGGT 229
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 195 GTAATGTATTTGAACAAAGCAGAGGCAAGAGATAAGTTATGCAGAGCTATACAGTATGGT 254
Query 230 TCCAAGTTCTTGAGTGGTGGACAACCTGGTACTGCTCAAAATGTTGACAAATCTACTAGC 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TCCAAGTTCTTGAGTGGTGGACAACCTGGTACTGCTCAAAATGTTGACAAATCTACTAGC 314
Query 290 TTAGCCAGAAAAGTCTTTCGTCTTTTCAAGTTTGTGAATGACTTGCATGGTCTCATCAGT 349
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 315 TTAGCAAGAAAAGTCTTCCGTCTTTTCAAGTTTGTGAATGACTTGCATGGTCTTATCAGT 374
Query 350 CCTGTGCCTAAAGGGACTCCTCTTCCTCTTGTTTTACTTGGAAAGTCGAAAAACGCACTT 409
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 375 CCTGTGCCTAAAGGAACTCCTCTTCCTCTTGTTTTACTTGGAAAGTCGAAGAACGCACTT 434
Query 410 TTATCTACATTCTTGTTCCTGGATCAAATTGTCTGGCTTGGGAGATCAGGAATATATAAG 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 TTATCTACATTCTTGTTCCTGGATCAAATTGTCTGGCTTGGGAGATCAGGAATATATAAG 494
Query 470 AACAAAGAACGAGCTGAGTTACTTGGACGTATATCTCTTTTCTGCTGGATGGGATCTTCT 529
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 495 AACAAAGAACGAGCTGAGTTACTTGGACGTATATCTCTCTTCTGCTGGATGGGATCTTCT 554
Query 530 GTATGTACAACTTTAGTCGAGGTTGGTGAGATTGGAAGGCTTTCTTCATCAATGAAGAAG 589
|| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 555 GTCTGCACAACTTTAGTCGAGGTTGGTGAGATGGGAAGGCTTTCTTCATCAATGAAGAAG 614
Query 590 ATCGAAAAGGGACTCAAGCATGGAAACAAGTATCAAGATGAGGAATATCGTGCTAAGCTA 649
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 615 ATCGAAAAGGGACTCAAGAATGGAAACAAGTATCAGGATGAGGATTATCGTGCTAAGCTA 674
Query 650 AAACAATCAAACGAGAGGTCACTTGCTTTGATCAAATCGGCTATGGACATTGTTGTAGCA 709
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 675 AAAAAATCAAACGAGAGGTCACTTGCTTTGATCAAATCAGCTATGGACATTGTTGTAGCA 734
Query 710 GCTGGTCTTCTTCAGTTAGCTCCAAAGAAGATCACTCCTCGTGTCACCGGAGCTTTTGGA 769
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 735 GCTGGTCTTCTTCAGTTAGCTCCAACGAAGATCACTCCTCGTGTCACCGGAGCTTTTGGA 794
Query 770 TTCATCACCTCCATCATTTCTTGTTACCAGTTGCTTCCGACACGCCCCAAGATCAAAACA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TTCATCACCTCCATCATTTCTTGTTACCAGTTGCTTCCGACACGCCCCAAGATCAAAACA 854
Query 830 CCCTGAAGTCGATCGAGGAAGCTGGTGTTAAGGAGAAAGTCATTTCAGAAAG-TTATGTT 888
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 855 CCCTGAAGTCAATCGAGGAAGCTGGTGTTAAGGAGAAAGTCATTTCAGAAAGTTTCTGTT 914
Query 889 GGTCTT-TTATTAAGGAAATTTGCTGCTGTTAT-AAA-A-C-------AT-CGTA--T-- 932
|||| |||||||||||||| |||||||||| ||| | | || | || |
Sbjct 915 CTTCTTATTATTAAGGAAATTCACTGCTGTTATAAAACATCGTATAAAATACTTATTTGC 974
Query 933 A--AA--A----TACT-T---TTTATGCCTCAGATTCTTGATACACAAG-TT---T--T- 973
| || | || | | |||||||||||||||||||||||||||| || | |
Sbjct 975 AGGAATTACGGTTATTATAAATTTATGCCTCAGATTCTTGATACACAAGTTTCAATACTC 1034
Query 974 AATAGTATTGCATTATTATGAGATGTTGTTTCTGCAAAGCAAAAACTAGA-GCAAAATCC 1032
||||||||||||||||||||||||||||||||||| | |||| ||||||| |||||||||
Sbjct 1035 AATAGTATTGCATTATTATGAGATGTTGTTTCTGCTACGCAATAACTAGAGGCAAAATCC 1094
Query 1033 AACTACATATGTGTTTTGATCTGATTATTATA 1064
|||||||||| |||||||||||||||||||||
Sbjct 1095 AACTACATATATGTTTTGATCTGATTATTATA 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52108165710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5