BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483714
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45760.1 | Symbols: BAP2, BAL | BON association protein 2 | ... 952 0.0
> AT2G45760.1 | Symbols: BAP2, BAL | BON association protein 2
| chr2:18847007-18847821 REVERSE LENGTH=815
Length=815
Score = 952 bits (515), Expect = 0.0
Identities = 632/684 (92%), Gaps = 25/684 (4%)
Strand=Plus/Plus
Query 40 ACATAAAACACACCATGTCGTATTCAACAGTGAAACGATCACTGGAGATTGAGGTAATCT 99
||| ||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 60 ACACAAAACACACCATGTCGTATTCAACATTCAAAAGATCACTGGAGATTGAGGTAATCT 119
Query 100 CAGCGGAAGGACTCAAGGTAGATCGAAAACCATTGAAGAAGAAAACATACAGCGTAGTGA 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 CAGCGGAAGGACTCAAGGTAGATCGAAAACCATTGAAGAAGAAAACATACAGCGTTGTGA 179
Query 160 GAATCGATGAGAAATCTTGGGCTTCCAAATTGGACGAATTAGGAGGGAGTTACCCAATTT 219
||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |||||||
Sbjct 180 GAATCGATGAGAAATCTTGGGCTTCCAAAGTGGATGAACTAGGAGGGAGTTATCCAATTT 239
Query 220 GGAAAGATAAATTCGATATGGAGATGCCAATAAACGCAAGTGTAAGGTTTATCTCCATTG 279
||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 GGAAAGATAGATTTGATATGGAGATGCCAATAAACGCAAGTGTAAGGTTTATATCCATTG 299
Query 280 AGGTTTATTATCGCACAAGTAG--G-GGGAGTGACAAAAATGTTGGTTACGCCAAGATTC 336
||||||| |||||||||||| | | ||||| |||||||| || ||||||||||||||||
Sbjct 300 AGGTTTACTATCGCACAAGTGGTAGTGGGAGGGACAAAAACGTAGGTTACGCCAAGATTC 359
Query 337 CGGTGACGGATTTCATCGGAGGTTTTGCTCCACAAGGGCATTTGAATTTCTTGAGTTACA 396
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGGTGACGGATTTCATGGGAGGTTTTGCTCCACAAGGGCATTTGAATTTCTTGAGTTACA 419
Query 397 GGTTGGGAGATGAGTATGGTGACAAATGTGGAATCGTCAATGTGTCTATCATGGTGAAAC 456
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 GGTTGAGAGATGAGTATGGTGACAAATGCGGAATCGTCAATGTGTCTATCATGGTGAAAC 479
Query 457 CTGACGGTAATGAT-A-AA-TC---GT--C-GTCGT--T--T--GCTGTGGCTCCGGTGG 501
|||||||||||||| | || || || | ||||| | | || |||||||||||||
Sbjct 480 CTGACGGTAATGATCATAAATCATCGTTGCCGTCGTCGTCGTTTGCGGTGGCTCCGGTGG 539
Query 502 ATTATGCTGCGTGTTCTTGGCAAGCTACCACGGCGTCGA--A-TAATCAAATGTGGAGAC 558
|||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||
Sbjct 540 ATTATGCTGCGTGTTCTTGGCAAGCTACGGCGGCGGCGAGGAATAATCAAATGTGGAGAC 599
Query 559 CGAGGACATCTTCATCAATGGCTTCGACTGCTGGTTATGGCGGTGGTCGTGTAGTCACCG 618
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 600 CGAGGACATCTTCATCAATGGTTTCGACTGCTGGTTATGGTGGTGGTCGTGTAGTCACCG 659
Query 619 GAGTTCCTGTTTGGTGTGCGTATCAACGGCCGTCTTAATTTT-Attt-ttttCTCGTATA 676
| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 660 GCGTTCCTGTTTGGTGTGCGTATCAACGGCCGTCTTAATTTTTATTTATTTTCTCGTATA 719
Query 677 TATATGCATGCACAGATTTATCTT 700
||| |||||||||||||||||||
Sbjct 720 TAT--GCATGCACAGATTTATCTT 741
Score = 82.4 bits (44), Expect = 6e-15
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1 AAACAATAAGGAATCTCCTGCAAAGAGGATTAGACTTATACATA 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAACAATAAGGAATCTCCTGCAAAGAGGATTAGACTTATACATA 45
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5