BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483717
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45800.1 | Symbols: PLIM2a | GATA type zinc finger transcrip... 1338 0.0
AT2G45790.1 | Symbols: ATPMM, PMM | phosphomannomutase | chr2:1... 102 6e-21
> AT2G45800.1 | Symbols: PLIM2a | GATA type zinc finger transcription
factor family protein | chr2:18857941-18859129 REVERSE
LENGTH=1015
Length=1015
Score = 1338 bits (724), Expect = 0.0
Identities = 778/804 (97%), Gaps = 3/804 (0%)
Strand=Plus/Plus
Query 1 AAAAGaaaaaaaCACAAAACCTGGttttttttCTCTCGTCGTCGTTTGGTCGTGTCCTAA 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAGAAAAAAACACAAAACCTGGTGTTTTTTCTCTCGTCGTCGTTTGGTCGTGTCCTAA 60
Query 61 GACAAGAACCGGCGAACGAAGAACAAACTTTTTGAATCTAATTTCCGAAAGAAAGAGAGA 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GACAAGAACCGGCGAACGAAGAACAAACTTTTTGAATCTAACATCCGAAAGAAAGAGAGA 120
Query 121 AAATGTCGTTTACAGGAACATTGGATAAATGCAAGGCCTGTGACAAAACCGTGTACGTGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATGTCGTTTACAGGAACATTGGATAAATGCAAGGCCTGTGACAAAACCGTGTACGTGA 180
Query 181 TGGATTTGTTAACATTAGAGGGTAACACTTATCACAAATCATGTTTCAGATGCAGCCATT 240
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 181 TGGATTTGTTAACATTAGAGGGTAATACTTATCACAAATCATGTTTCAGATGCACCCATT 240
Query 241 GCAAAGGCACTCTCGTGATAAGCAATTACTCATCAATGGATGGAGTTCTTTATTGTAAGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GCAAAGGCACTCTCGTGATAAGCAATTACTCATCAATGGATGGAGTTCTTTACTGTAAGC 300
Query 301 CACACTTCGAACAGCTTTTCAAAGAATCTGGCAATTACAGCAAGAATTTTCAGACTGGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 301 CACACTTCGAACAGCTTTTCAAAGAATCTGGCAATTACAGCAAGAATTTTCAGGCAGGAA 360
Query 361 AGACCGAGAAGCCCAATGATCATCTGACTCGAACTCCAAGCAAGTTATCATCATTCTTCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGACCGAGAAGCCCAATGATCATCTGACTCGAACTCCAAGCAAGTTATCATCATTCTTCA 420
Query 421 GTGGAACACAAGACAAATGTGCGACTTGTAAGAAAACGGTTTACCCACTTGAGAAAGTAA 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 GTGGAACACAAGACAAATGTGCGACTTGTAAGAAGACGGTTTACCCACTTGAGAAAGTAA 480
Query 481 CAATGGAAGGAGAAAGTTACCACAAGACTTGCTTCAGGTGCAGTCACAGTGGTTGTCCTT 540
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 CAATGGAAGGAGAAAGTTACCACAAGACTTGCTTCAGGTGCACACACAGTGGTTGTCCTT 540
Query 541 TGACTCACTCTTCTTACGCTTCTCTTAATGGCGTCCTCTACTGTAAAGTCCATTTCAATC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 TGACTCACTCTTCTTACGCTTCTCTTAATGGCGTCCTCTACTGTAAAGTCCACTTCAATC 600
Query 601 AGCTCTTTCTCGAGAAAGGCAGTTACAATCACGTCCATCAAGCCGCTGCTAACCACCGTC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGCTCTTTCTCGAGAAAGGCAGTTACAATCACGTCCATCAAGCCGCTGCTAACCACCGTC 660
Query 661 GATCCGCCTCTTCTGGTGGCGCTTCTCCCCCTTCTGATGATCACAAACCTGAAGACAGCG 720
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct 661 GATCCGCCTCTTCTGGTGGCGCTTCTCCTCCTTCTGATGATCACAAACCTGACGACACCG 720
Query 721 CCTCAATTCCCGAGGGAAAAGAAGATGAATCTGTCGCTGAAGCTGCAGGAGA-G-G-AGC 777
||||||||||||| | |||||||||||| ||| | |||||||||||||||| | | |||
Sbjct 721 CCTCAATTCCCGAAGCAAAAGAAGATGACGCTGCCCCTGAAGCTGCAGGAGAAGAGGAGC 780
Query 778 CTGAGCCTGTGGTTGAGTCTTGAA 801
||||||| || |||||||||||||
Sbjct 781 CTGAGCCGGTCGTTGAGTCTTGAA 804
Score = 217 bits (117), Expect = 2e-55
Identities = 131/137 (96%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 821 TTTAATGAATATATAAATAC-AATTGTTGTTGTTTCTTCTTGTAAATTCTTGTAAAGTTT 879
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 865 TTTAATGAATATATAAATACAAATTGTTGTTGTTTCTTCTTGTAAATTCTTGTAAAGTTT 924
Query 880 -AAAGCTCTTTT-GGAGAGAATCTGTTGTAAACAAAATCTTTATTATCCAAttttttttG 937
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 925 TAAAGCTCTTTTTGGAGAGAATCTGTTGTAAACAAAATCTTTAACATCCAATTTTTTTTG 984
Query 938 AAGAGGATATCTTTAAC 954
|||||||||| ||||||
Sbjct 985 AAGAGGATATTTTTAAC 1001
> AT2G45790.1 | Symbols: ATPMM, PMM | phosphomannomutase | chr2:18855775-18858018
FORWARD LENGTH=1107
Length=1107
Score = 102 bits (55), Expect = 6e-21
Identities = 61/64 (95%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 891 GGAGAGAATCTGTTGTAAACAAAATCTTTATTATCCAAttttttttGAAGAGGATATCTT 950
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1107 GGAGAGAATCTGTTGTAAACAAAATCTTTAACATCCAATTTTTTTTGAAGAGGATATTTT 1048
Query 951 TAAC 954
||||
Sbjct 1047 TAAC 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46717756710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5