BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483721
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45830.1 | Symbols: DTA2 | downstream target of AGL15 2 | ch... 2961 0.0
AT3G61270.1 | Symbols: | Arabidopsis thaliana protein of unkno... 1046 0.0
> AT2G45830.1 | Symbols: DTA2 | downstream target of AGL15 2 |
chr2:18866061-18868542 FORWARD LENGTH=2033
Length=2033
Score = 2961 bits (1603), Expect = 0.0
Identities = 1836/1947 (94%), Gaps = 22/1947 (1%)
Strand=Plus/Plus
Query 1 AAAAACTAAAAAGTAAACAAGATTCACACAAAAATATGAACTTCATTAACACAAAAGATG 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3 AAAAACTAAAAAGTAAACAAGATTCACACAAAAATATGAACGTCATTAACACAAAAGATG 62
Query 61 TGAACTCTGGTTAGTGTTGAAGAAAACGTGAAACAAGATTCAAATCCTCGTGGAAAAGCA 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 63 TGAACTCTGGTTAGTGTTGAAGATAACGTGAAACAAGATTCAAATCCTCGTGGAAGAGCA 122
Query 121 CCAATATTCGATCATCAGAATCAAACCTTTGAGCTTCCTCCTAGCTTCGGTAACGTTTAA 180
|| | | ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CC-A-A-TCGATCACCAGAATCAAACCTTTGAGCTTCCTCCTAGCTTCGGTAACGTTTAA 179
Query 181 TCTCGCCTGATTCTCGTTTTTCTTCTCTTCCTGTTGAATGTTTGTGAGCATATATATATA 240
|||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 180 TCTCACCTGATTCTCGTTTTTCTTCTCTTCCTGTTGAATGTTTGTGAACATAGATATATA 239
Query 241 CAAAGCTGAGATAGATATAGATTCATGCTTCACCGGATAAGCATGAAGAGGAACAACAAC 300
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 240 TAAAGCTGAGATAGATATAGATTCATGCTTCAACGGAAAAGCATGAAGAGGAACAACAAC 299
Query 301 AATCCTCAAACGAACAAGAATAAGTATGTCTGTCTTAAAACGGCGTCGCATCCAGCAAAA 360
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 AATCTTCTAACGAACAAGAATAAGTATGTCTATCTTAAAACGGCGTCGCATCCAGCAAAA 359
Query 361 AGCATCGCTAAAGCTACTCTGTTCCTCGTCACCTCTCTCTTCATATCTGCTGGTCTCTTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGCATCGCTAAAGCTACTCTGTTCCTCGTCACCTCTCTCTTCATATCTGCTGGTCTCTTA 419
Query 421 GATTTATTGGGTTGTTTCGATTTCACAACTTTTGCAGGTCTGATGCAAGTAACAACAACT 480
|| |||||||||||||||||||||||||||||| ||||||||| ||| |||||||| | |
Sbjct 420 GACTTATTGGGTTGTTTCGATTTCACAACTTTTACAGGTCTGAAGCAGGTAACAACTAGT 479
Query 481 ATCAGAAAATCACCAATCACAAACCGAAGATTCCCTAACCAATGCGACGTCGTAAAGAAC 540
|||||||||||||||||||||| || |||||||||||||||||||| |||||| |||||
Sbjct 480 ATCAGAAAATCACCAATCACAAGCCAAAGATTCCCTAACCAATGCGGCGTCGTTCAGAAC 539
Query 541 CAAACTCAATTATTTCCCGAAGATGGCTCCTCGAGAAACAACAACAAAAAACCCAGAAGC 600
|||||||||||||||||| || |||||||||||||||||||| || ||||||||||||
Sbjct 540 CAAACTCAATTATTTCCCCAAAATGGCTCCTCGAGAAACAACGAC---AAACCCAGAAGC 596
Query 601 AGCCATTCACGACCATCCACGTGTCCTTCTTACTTCCGTTGGATCCACGAAGATCTACGG 660
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGCCATTCAAGAATATCCACGTGTCCTTCTTACTTCCGTTGGATCCACGAAGATCTACGG 656
Query 661 CCATGGAAAGAGACAGGTATAACGAGAGGGATGCTTGAAAAAGCGAGGAGGACGGCGCAT 720
|||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||
Sbjct 657 CCATGGAAAGAGACAGGTGTAACGAGAGGGATGCTTGAGAAAGCCAGGAGGACGGCGCAT 716
Query 721 TTCAGGGTAGTAATCCTCGACGGGAGAGTGTACGTTAAGAAGTACAGAAACTCAATCCAG 780
||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 717 TTCAGAGTAGTAATCCTCGACGGGAGAGTGTACGTTAAGAAATATAGAAAGTCAATCCAA 776
Query 781 ACTAGAGATGTTTTTACTCTGTGGGGTATCGTACAGTTGCTACGGTGGTACCCAGGTAGA 840
|| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 777 ACAAGAGACGTTTTTACTCTGTGGGGCATCGTACAGTTACTACGGTGGTACCCAGGTAGG 836
Query 841 CTGCCAGATCTTGAGCTTATGTTTGACCCAGATGATAGACCAACCGTCCGATCTAAAGAC 900
| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TTACCGGATCTTGAGCTCATGTTTGACCCAGATGATAGACCAACCGTCCGATCTAAAGAC 896
Query 901 TTTCAAGGTCAACAGCACCCGGCCCCGCCTCCTTTATTCCGTTATTGCTCTGATGACGCC 960
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 897 TTTCAAGGTCAACAACACCCGGCCCCGCCTCCTTTGTTCCGTTATTGCTCTGATGACGCC 956
Query 961 AGCTTGGATATCGTCTTCCCTGATTGGTCCTTCTGGGGCTGGGCTGAGGTTAATATAAAG 1020
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AGCTTGGATATTGTCTTCCCTGATTGGTCCTTCTGGGGCTGGGCTGAGGTTAATATAAAG 1016
Query 1021 CCTTGGGCTAAATCGCTAGTGGCGATAGAAGAAGGGAACAAGATGACGCAATGGAAAGAC 1080
||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1017 CCTTGGGATAAATCGCTAGTGGCGATAGAAGAAGGGAATAAGATGACTCAATGGAAAGAC 1076
Query 1081 CGCGTGGCGTATGCTTATTGGAGAGGAAATCCC-AATGTGGCTCCAACTAGAAGAGATCT 1139
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1077 CGCGTGGCGTATGCTTATTGGAGAGGAAA-CCCTAATGTGGCTCCAACTAGAAGAGATCT 1135
Query 1140 TCTTAGATGTAATGTCTCAGCTCAAGAAGATTGGAACACACGTCTCTACATTCAGGATTG 1199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TCTCAGATGTAATGTCTCAGCTCAAGAAGATTGGAACACACGTCTCTACATTCAGGATTG 1195
Query 1200 GGATAGAGAATCTAGAGAAGGATTCAAGAATTCAAACCTAGAGAACCAATGCAACCACAG 1259
||||||||| || ||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 1196 GGATAGAGAGTCAAGAGAAGGATTCAAGAACTCTAACCTAGAGAACCAATGCACCCACAG 1255
Query 1260 GTACAAGATTTATATAGAAGGATGGGCATGGTCAGTGAGTGAGAAATATATAATGGCATG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GTACAAGATTTATATAGAAGGATGGGCATGGTCAGTGAGTGAGAAATATATAATGGCATG 1315
Query 1320 TGATTCAATGACACTATACGTGAGACCTATGTTCTATGATTTTTACATACGAGGAATGAT 1379
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1316 TGATTCAATGACATTGTACGTGAGACCTATGTTCTATGATTTTTACGTACGAGGAATGAT 1375
Query 1380 GCCATTACAACATTATTGGCCCATCAGAGACAACTCTAAGTGTACTTCCCTCAAATTCGC 1439
||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1376 GCCATTACAACATTACTGGCCAATCAGAGACACCTCTAAGTGTACTTCCCTCAAATTCGC 1435
Query 1440 CGTACATTGGGGAAATACTCATTTGGACCAGGCGAGTAAGATAGGAGAAGAAGGAAGTAG 1499
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1436 CGTACATTGGGGGAATACTCATTTGGACCAGGCGAGTAAGATAGGAGAAGAAGGGAGTAG 1495
Query 1500 GTTTATTAGAGAGGAAGTGAAAATGGAATATGTGTATGACTACATGTTCCATTTGATGAA 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 GTTTATTAGAGAGGAAGTGAAAATGGAATATGTGTATGACTACATGTTCCATTTGATGAA 1555
Query 1560 CGAGTATGCAAAACTTTTGAAGTTTAAACCGGAGATTCCGTGGGGAGCCACCGAGATTAC 1619
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1556 CGAGTATGCAAAACTTTTGAAGTTTAAACCAGAGATTCCGTGGGGAGCCACGGAGATTAC 1615
Query 1620 GCCTGATAGTATGGGCTGC-CAAGCGACGGGGCGGTGGAGAGATTTCATGGCGGAGTCTA 1678
||| |||| |||||||||| | |||||||| ||||||||||||||||||| ||||||||
Sbjct 1616 GCCGGATATTATGGGCTGCTCG-GCGACGGGACGGTGGAGAGATTTCATGGAGGAGTCTA 1674
Query 1679 TGGTGATGTTTCCTAGTGAAGAGTCTCCTTGTGAGATGCCTTCTCCTTTTAACCCTCAGG 1738
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1675 TGGTTATGTTTCCTAGTGAAGAGTCTCCTTGTGAGATGCCTTCTCCTTTTAACCCTCATG 1734
Query 1739 ATTTAAGAGAGGTTCTTGAGAGAAAAGCTAATTTGACTCGTCAAGTTGAGTTGTGGGAAG 1798
|||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1735 ATTTAAAAGAGATTCTTGAGAGAAAAACTAATTTGACTCGTCAAGTTGAGTGGTGGGAAG 1794
Query 1799 ATCAATACTTTCATGATTTGGCTTTGGCCAATAGCAAGAAGCCTTGACCAAAGAGGCTCT 1858
||||||| ||||||||||| || | |||| |||||||||||||||||| |||||||
Sbjct 1795 ATCAATATTTTCATGATTTAGC-----C-AATATCAAGAAGCCTTGACCAAAAAGGCTCT 1848
Query 1859 TGT-TTTGTTTAGATGATTGATTTGCATTTAT-TATTGAAATTAGT-ATAAAGTAAACTA 1915
||| ||||||||||||||||| ||| ||| || ||||||||||||| | ||||||||| |
Sbjct 1849 TGTGTTTGTTTAGATGATTGAGTTGTATTCATATATTGAAATTAGTGA-AAAGTAAACGA 1907
Query 1916 GTAATTCtttttttCCGACTAGTGTGT 1942
|||||| |||||| ||||||||| |||
Sbjct 1908 GTAATT-TTTTTT-CCGACTAGTATGT 1932
> AT3G61270.1 | Symbols: | Arabidopsis thaliana protein of unknown
function (DUF821) | chr3:22678151-22680379 FORWARD LENGTH=1783
Length=1783
Score = 1046 bits (566), Expect = 0.0
Identities = 1006/1216 (83%), Gaps = 39/1216 (3%)
Strand=Plus/Plus
Query 614 CATCCACGTGTCCTTCTTACTTCCGTTGGATCCACGAAGATCTACGGCCATGGAAAGAGA 673
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |
Sbjct 400 CATCCACGTGTCCTTCTTATTTCCGTTGGATCCATGAAGATCTACGGCCATGGAAACAAA 459
Query 674 CAGGTATAACGAGAGGGATGCTTGAAAAAGCGAGGAGGACGGCGCATTTCAGGGTAGTAA 733
| || ||||| ||||||||| | ||| ||||||| || ||||||||||| || | || |
Sbjct 460 CGGGGATAACTAGAGGGATGATCGAAGAAGCGAGTAGAACGGCGCATTTTAGATTGGTGA 519
Query 734 TCC-TCGACGGG-AGAGTGTACGTTAAGAAG-TA-CAGAAACTCAATCCAGACTAGAGAT 789
||| | ||||| || | |||||||||| || || || || ||||| || || ||||||
Sbjct 520 TCCGT-AACGGGAAG-GCGTACGTTAAG-AGATATAAG-AAGTCAATACAAACAAGAGAT 575
Query 790 GTTTTTACTCTGTGGGGTATCGTACAGTTGCTACGGTGGTACCCAGGTAGACTGCCAGAT 849
| |||||||||||||| ||| |||||||| ||||||||||||| |||| | | || |||
Sbjct 576 GAATTTACTCTGTGGGGAATCTTACAGTTGTTACGGTGGTACCCTGGTAAATTACCTGAT 635
Query 850 CTTGAGCTTATGTTTGACCCAGATGATAGACCAACCGTCCGATCTA-AAGACTTTCA-AG 907
|| ||||| ||||| ||| | |||||| | || ||||||||| | |||||| | |
Sbjct 636 CTCGAGCTAATGTTCGACGCTGATGATCGTCCCGTCGTCCGATC-AGTTGACTTT-ATTG 693
Query 908 GTCAACAGCACCCGGCCCCGCCTCC-TTTATTCCGTTATTGCTCTGATGACGCCAGCTTG 966
|||||||| | || || ||||| || |||||||| || || |||||||| ||||||
Sbjct 694 GTCAACAG-A--AGGAACCACCTCCAGTT-TTCCGTTACTGTTCAGATGACGCAAGCTTG 749
Query 967 GATATCGTCTTCCCTGATTGGTCCTTCTGGGGCTGGGCTGAGGTTAATATAAAGCCTTGG 1026
|| || |||||||||||||||||||| |||||||||||||| || || |||| || |||
Sbjct 750 GACATTGTCTTCCCTGATTGGTCCTTTTGGGGCTGGGCTGAAGTGAACGTAAAACCATGG 809
Query 1027 GCTAAATCGCTAGTGGCGATAGAAGAAGGGAACAAG-ATGACGCAATGGAAAGACCGCGT 1085
| |||||| | | ||| ||| ||||||||||| || |||||||||||||| ||||||||
Sbjct 810 GGGAAATCGTTGGAGGCAATAAAAGAAGGGAAC-AGTATGACGCAATGGAAGGACCGCGT 868
Query 1086 GGCGTATGCTTATTGGAGAGGAAATCCCAATGTGGCTCCAACTAGAAGAGATCTTCT-TA 1144
|||||| |||||||||||||| ||||| |||| | ||| ||| |||||||||| |
Sbjct 869 GGCGTACGCTTATTGGAGAGGTAATCCTTATGTTGATCCTGGAAGAGGAGATCTTCTCAA 928
Query 1145 GATGTAATGTCT-CAGCTCAAGAAGATTGGAACACACGTCTCTACATTCAGGATTGGGAT 1203
| ||||||| || ||| || ||||| ||||| || |||||||| |||||||||||||||
Sbjct 929 G-TGTAATG-CTACAGAACATGAAGAGTGGAATACTCGTCTCTATATTCAGGATTGGGAT 986
Query 1204 AGAGAATCTAGAGAAGGATTCAAGAATTCAAACCTAGAGAACCAATGCAAC-CACAGGTA 1262
| |||| | | ||||||||||||||| ||||| ||||||||||| ||| || || || ||
Sbjct 987 AAAGAAACAAAAGAAGGATTCAAGAACTCAAATCTAGAGAACCAGTGC-ACTCATAGATA 1045
Query 1263 CAAGATTTATATAGAAGGATGGGCATGGTCAGTGAGTGAGAAATATATAATGGCATGTGA 1322
|||||| ||||||||||||||||||||||| || || |||||||| ||||||||||||||
Sbjct 1046 CAAGATATATATAGAAGGATGGGCATGGTCGGTTAGCGAGAAATACATAATGGCATGTGA 1105
Query 1323 TTCAATGACACTATACGTGAGACCTATG-TTCTATGATTTTTACATACGAGGAATGATGC 1381
||||||||| |||| || | ||| | | ||||| ||||| |||||||||||||||||||
Sbjct 1106 CTCAATGACATTATATGTAAAACC-AAGATTCTACGATTTCTACATACGAGGAATGATGC 1164
Query 1382 CATTACAACATTATTGGCCCATCAGAGACAACTCTAAGTGTACTTCCCTCAAATTCGCCG 1441
||||||||||||||||||| ||||||||| | || ||||||||||| |||||||||||||
Sbjct 1165 CATTACAACATTATTGGCCAATCAGAGACGATTCCAAGTGTACTTCTCTCAAATTCGCCG 1224
Query 1442 TACATTGGGGAAATACTCATTTGGACCAGGCGAGTAAGATAGGAGAAGAAGGAAGTAGGT 1501
|||||||||| ||||| || |||| |||| || |||||||||| | ||||||||| |
Sbjct 1225 TACATTGGGGCAATACACACGAGGACAAGGCTCGTGAGATAGGAGAGGTAGGAAGTAGAT 1284
Query 1502 TTATTAGAGAGGAAGTGAAAATGGAATATGTGTATGACTACATGTTCCATTTGA-TGAAC 1560
|||| |||||||| ||||| ||| | |||||||||||||| ||||| ||||| | | ||
Sbjct 1285 TTATAAGAGAGGAGGTGAATATGCAGTATGTGTATGACTATATGTTTCATTT-ACTCAAA 1343
Query 1561 GAGTATGCAAAACTTTTGAAGTTTAAACCGGAGATTCCGTGGGGA-GCCA-CCGAGATTA 1618
|||||||||| ||| ||||| ||||| ||||||||||||| || | || ||||| |
Sbjct 1344 GAGTATGCAACACTCTTGAAATTTAAGCCGGAGATTCCGT-TAGATG-CAGAGGAGATCA 1401
Query 1619 CGCCTGATAGTATGGGCTG-CCAAGCGACGGGGCGGTGGAGAGATTTCATGGCGGAGTCT 1677
|||| ||||||||||| || || ||||||| ||||||||||||| | |||||||||
Sbjct 1402 CGCCGGATAGTATGGGGTGTCC-CGCGACGGAAAGGTGGAGAGATTTTAAGGCGGAGTCA 1460
Query 1678 ATGGTGATGTTTCCTAGTGAAGAGTCTCCTTGTGAGATGCCTTC-TCCTTTTAACCCTC- 1735
||| | || | ||||||||||||||||||||||||||||| ||| ||||| | | ||||
Sbjct 1461 ATGATTATATCTCCTAGTGAAGAGTCTCCTTGTGAGATGC-TTCCTCCTTATGATCCTCT 1519
Query 1736 AGGATTTAAGAGAGGTTCTTGAGAGAAAAGCTAATTTGACTCGTCAAGTTGAGTTGTGGG 1795
|| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1520 AGC-TTTAAAAGAGGTTCTTGAGAGAAAAGCTAATTTAACTCGTCAGGTTGAGTTGTGGG 1578
Query 1796 AAGATCAATACTTTCA 1811
|| | |||||||||||
Sbjct 1579 AAAACCAATACTTTCA 1594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96334845855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5