BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483725
Length=1712
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45850.1 | Symbols: | AT hook motif DNA-binding family prot... 2196 0.0
AT3G61310.1 | Symbols: | AT hook motif DNA-binding family prot... 99.0 1e-19
> AT2G45850.1 | Symbols: | AT hook motif DNA-binding family protein
| chr2:18871479-18873972 REVERSE LENGTH=1886
Length=1886
Score = 2196 bits (1189), Expect = 0.0
Identities = 1558/1717 (91%), Gaps = 102/1717 (6%)
Strand=Plus/Plus
Query 1 CATTAGGATTTTGAATTTCCAAATACATTTTCAGAAAAAAGAGAACTAAAAGATCCCATT 60
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1 CATTAGGATTTTGAATTTCCAAATACATTTTCAGAAAAAAAAGAATTAAAAGATCCCATT 60
Query 61 GTTGTTATCCTCACAGTAAATGCTTTTGCTTGAGAGAG-GTTCTGTTAGAGGTTTTTTGT 119
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 61 GTTGTTATCCTCACAGTAAATGCTTTTGCTTGAGAGAGAG-TCTGTTAGAGGTTTTTTGT 119
Query 120 TTGCTTCTGTTTCCTTCTGTCACCCAGAAAAC--AAAA--AAGCAAATTC----A-AGA- 169
||| |||||||||||||||||||||||||||| |||| || ||||||| | |||
Sbjct 120 TTGTTTCTGTTTCCTTCTGTCACCCAGAAAACTAAAAAGCAAACAAATTCAAGAAGAGAG 179
Query 170 AGAGAGAGAGATAG---C---ACTAA-----AACCATTGTT-ATAGAAGAGAAAGCTTTT 217
|||||||||||||| | || || |||||||||| ||||||||||||||||||
Sbjct 180 AGAGAGAGAGATAGCCTCAAAACCAAGTCCTAACCATTGTTGATAGAAGAGAAAGCTTTT 239
Query 218 C-TTTCTTGTTGCTTATGGTGAAAGAATG-AA-AGAGAGA-GAGGAGAAGTAAGAAGCTG 273
| ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
Sbjct 240 CTTTTCTTGTTGCTTATGGTGAAAGAATGAAAGAGAGAGAGGAGGAGAAGTAAGAAGCAG 299
Query 274 AGAAAGTGTTTAGAGCTTTGCATGTTCCTTTCTCGCCAAGTTTATATCTTCATCTGTTCC 333
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 300 AGAAAGTGTTTAGAGCTTTGCATGTTCCTTTCTCTCCAAGTTTATATCTTCATCGGTTTC 359
Query 334 ACAATTTCACTT----A----AAAAGAGTC--T-TTCTTCAACTACTGTAAATGCAAAAT 382
|||| ||||||| | ||||||||| | ||||||||||| ||||||||| ||||
Sbjct 360 ACAAGTTCACTTAAAAAGTTGAAAAGAGTCTTTCTTCTTCAACTATTGTAAATGCGAAAT 419
Query 383 GGATCGAAGAGATGCAATGGGATTATCCGGGTCGGGTTCTTACTATATCCATAGAGGATT 442
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 GGATCGAAGAGATGCAATGGGATTATCCGGGTCAGGTTCTTACTATATCCATAGAGGATT 479
Query 443 ATCCGGGTCGGGTCCTCCAACGTTTCACGGATCATCACAG---CAGCAAGGGCTTCGTCA 499
||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||
Sbjct 480 ATCCGGGTCGGGTCCTCCAACGTTTCATGGATCACCACAGCAACAGCAAGGTCTTCGTCA 539
Query 500 CTTACCTAATCAAAACTCTCCATTCGGGCCAGGCTCCACTGGTTTCGGA------TC--T 551
|||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 540 CTTACCTAATCAAAACTCTCCATTCGGGTCAGGCTCCACTGGTTTCGGATCTCCTTCTTT 599
Query 552 -C-C--T--T-C-TC-C-GGCAACTGCGGCCGGAGGAGCCGGAGCTCTTCCTCATCATAT 601
| | | | | || | |||||| || ||||||||||||||||||||||||||||||||
Sbjct 600 ACACGGTGATCCTTCTCTGGCAACAGCAGCCGGAGGAGCCGGAGCTCTTCCTCATCATAT 659
Query 602 CGGCGTTAATATGATTGCTCCTCCGCCACCTCCTAGTGAAACTCCGATGAAACGAAAGAG 661
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 660 CGGCGTTAATATGATTGCTCCTCCTCCACCTCCCAGTGAAACTCCGATGAAACGAAAGAG 719
Query 662 AGGACGTCCTAGAAAATACGGACAAGACGGTC-CTGTTTCTTTGGCACTGTCGTCTTCCT 720
|||||| |||||||||||||| |||||||| | ||||||||||||| |||||||||||||
Sbjct 720 AGGACGGCCTAGAAAATACGGTCAAGACGG-CTCTGTTTCTTTGGCTCTGTCGTCTTCCT 778
Query 721 CTGTTTCGACCATTACTCCCAACAACTCTAACAAACGCGGCCGTGGTCGACCTCCGGGTT 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 779 CTGTTTCGACCATTACTCCCAACAACTCTAACAAACGCGGCCGTGGTCGACCTCCGGGCT 838
Query 781 CCGGCAAGAAACAGAGAATGGCTTCCATTGGTGAATTGATGCCTTCATCTTCTGGAATGA 840
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 839 CCGGCAAGAAACAGAGAATGGCTTCCGTTGGTGAACTGATGCCTTCATCTTCTGGAATGA 898
Query 841 GCTTCACGCCACACGTTATCGCGGTTTCAATAGGAGAAGATATTGCATCAAAGGTTATAT 900
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GCTTCACGCCACATGTTATCGCGGTTTCAATAGGAGAAGATATTGCATCAAAGGTTATAG 958
Query 901 CTTTCTCTCAACAAGGTCCAAGAGCCATTTGCGTTTTATCTGCAAGTGGTGCAGTCTCTA 960
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CTTTCTCTCAACAAGGTCCGAGAGCCATTTGCGTTTTATCTGCAAGTGGTGCAGTCTCTA 1018
Query 961 CTGCAACACTTCTTCAACCATCAG---CTCCCGGAGCTATTAAATACGAGGGCCGGTTTG 1017
||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1019 CTGCAACACTTATTCAACCATCAGCATCTCCCGGAGCCATTAAATACGAGGGCCGGTTTG 1078
Query 1018 AAATCCTAGCGTTATCAACATCTTATCTAGTGGCAACTGATGGAAGCTTCCGTAATCGAA 1077
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1079 AAATCCTAGCGTTATCAACATCTTATATAGTGGCAACTGATGGAAGCTTCCGTAACCGAA 1138
Query 1078 CTGGAAACTTATCGGTTTCTCTTGCTAGCCCCGATGGGCGTGTGATTGGTGGTGCCATTG 1137
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1139 CTGGAAACTTATCGGTTTCGCTTGCTAGCCCCGATGGGCGTGTGATTGGCGGTGCCATTG 1198
Query 1138 GTGGGCCTTTAATAGCAGCAAGTCCTGTTCAGGTTATAATAGGGAGCTTTATATGGGCAG 1197
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1199 GTGGGCCTTTAATAGCTGCAAGTCCTGTTCAGGTTATTGTAGGGAGCTTTATATGGGCAG 1258
Query 1198 CTCCAAAGATCAAGAGCAAGAAACGAGAAGAAGATGCTTCTGAAGTTGTTCAAGACACTG 1257
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1259 CTCCAAAGATCAAGAGCAAGAAACGAGAAGAAGAAGCTTCTGAAGTTGTTCAAGAAACTG 1318
Query 1258 ATGATCATCACGTTCTGGACAATAATAACAACACGATTTCGCCTGTCCCTCAGCAGCAGC 1317
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ATGATCACCACGTTCTGGACAATAATAACAACACGATTTCGCCTGTCCCTCAGCAGCAGC 1378
Query 1318 CAAGCCAAAACCTGATATGGTCAACAGGTTCAAGGCAAATGGATATGCGTCATGCTCATG 1377
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CAAACCAAAACCTGATTTGGTCAACAGGTTCAAGGCAAATGGATATGCGTCATGCTCATG 1438
Query 1378 CTGATATTGATTTAATGCGCGGTTGATGATGATGATGATAGCGGGAAAGAACTCTGTGTA 1437
|||||||||||||||||||| | | | ||||||||||| ||||||||||||||||
Sbjct 1439 CTGATATTGATTTAATGCGC----G--G-T--TGATGATAGCGAGAAAGAACTCTGTGTA 1489
Query 1438 TATAAAGCATGGAATCTAGGAAGAAGAAGAAGGAATATAAGCTAA-C-CT---C------ 1486
||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1490 TATAAAGCATGGAATCTAGGAAGAAGAAGAAGGAATATAAGCTAACCTCTGAACAAAAGT 1549
Query 1487 ---T-G--A----A---CAAAAG--TATGTGGAAATGTTAGGCAAAAAGATTGACTCTAT 1531
| | | | ||||| ||||||||||||||||| ||||||||| |||||||
Sbjct 1550 ATGTGGAAATGTTAGGGAAAAAGATTATGTGGAAATGTTAGGGAAAAAGATTAACTCTAT 1609
Query 1532 TAGTGTACCTCTCAAATCTATAAGCTTATTTGGTTTTGTTGTTT-TAGTGACTCTGAAGA 1590
|||||||||||||| |||| ||||||| ||||||||| ||||| | |||||||||||||
Sbjct 1610 TAGTGTACCTCTCATATCTCTAAGCTTGTTTGGTTTTACTGTTTCT-GTGACTCTGAAGA 1668
Query 1591 TTTGCAGAGTTCCTTGATTTCTCTATTTCAGATTGTT 1627
||||||||||||||| ||||||| ||| ||||||||
Sbjct 1669 TTTGCAGAGTTCCTTTCTTTCTCTGTTTTAGATTGTT 1705
> AT3G61310.1 | Symbols: | AT hook motif DNA-binding family protein
| chr3:22690596-22692834 REVERSE LENGTH=1657
Length=1657
Score = 99.0 bits (53), Expect = 1e-19
Identities = 72/81 (89%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 381 ATGGATCGAAGAGATGCAATGG-GATTATCCGGGTCGGGTTCTTACTATATCCATAGAGG 439
|||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 390 ATGGATCGAAGAGACGCAATGGCG-TTATCCGGGTCGGGTTCTTACTATATCCAAAGAGG 448
Query 440 ATTATCCGGGTCGGGTCCTCC 460
| | |||| || ||||||||
Sbjct 449 AATCCCCGGTTCTGGTCCTCC 469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84638118870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5