BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483726

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G45860.1 | Symbols:  | unknown protein; Has 32 Blast hits to...   555    1e-157


> AT2G45860.1 | Symbols:  | unknown protein; Has 32 Blast hits 
to 32 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:18874760-18875586 REVERSE 
LENGTH=411
Length=411

 Score =  555 bits (300),  Expect = 1e-157
 Identities = 349/372 (94%), Gaps = 5/372 (1%)
 Strand=Plus/Plus

Query  1    GGAAAAAATGTCGAAGAAGAACAATTTAGCCAAGAGAAAGAAGCAGCACGAGTACAATCT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  12   GGAAAAAATGTCGAAGAAGAACAATTTAGCCAAGAGAAAGAAGCAGCACGAGTACAATCT  71

Query  61   CCAAAAAGAGAAAGAATTACAGGACAAGAAGATTAAGAAGCTTCATGCGAACAAGAACAA  120
            ||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct  72   CCAAAAAGAGAAAGAGTTACAGGACAAGAAGATCAAGAAGCTTCATGCCAACAAGAATAA  131

Query  121  GATGAAAGTTGATGGAAGTGGGAAGAAGAAGAAAGGTGGATTTTCTGTTGGCAAGAAGAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  132  GATGAAAGTTGATGGAAGTGGGAAGAAGAAGAAAGGTGGATTTTCTGTTGGCAAGAAGAA  191

Query  181  ATTGAAGACGAAATTGACTCCAGCTGCTAAAGCTAAAGCTGCTCAGGCAATGGAGCTAGA  240
            ||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  192  ATTAAAGACAAAACTGACTCCAACTGCTAAAGCTAAAGCTGCTCAGGCAATGGAGCTAGA  251

Query  241  CAATTGACCAAGGAACCTCAGTTTTCTTTCACTTGTATGTAAACT-GTTCTTCATTGATC  299
            |||||||| ||||||| || ||||| ||||||||||||||||| | ||||||||||||||
Sbjct  252  CAATTGAC-AAGGAACTTC-GTTTTTTTTCACTTGTATGTAAAATTGTTCTTCATTGATC  309

Query  300  TTTGTCTTTACTTTGAAGAAATT-TAGTTGAATCTATCTTCTTATTATAGGTTAAACTTT  358
            || |||||||||||| ||||||  | |||||| ||| |||||| |||||||||||||| |
Sbjct  310  TTCGTCTTTACTTTGGAGAAATCAT-GTTGAAGCTAGCTTCTTCTTATAGGTTAAACTCT  368

Query  359  TATGTATCACTC  370
            ||||||||||||
Sbjct  369  TATGTATCACTC  380



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17442908903


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5