BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483727
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45870.1 | Symbols: | Bestrophin-like protein | chr2:188758... 2056 0.0
> AT2G45870.1 | Symbols: | Bestrophin-like protein | chr2:18875894-18877477
FORWARD LENGTH=1304
Length=1304
Score = 2056 bits (1113), Expect = 0.0
Identities = 1241/1304 (95%), Gaps = 3/1304 (0%)
Strand=Plus/Plus
Query 1 TCCCTAACCCTAAACCTCGATTTTCCCGCCCAAAATGTATCAGTCCATGAACCTATCTTT 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 TCCCTAACCCTAAACCTCGATTTTCCCGCCCAAAATGTATCAGTCAATGAACCTATCTTT 60
Query 61 TTCTTCTAACTTTACCAACCGATCCTTTCTCAAACCACGATTATGCTCCGGAATCTCCGC 120
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTCTTCTAACTTTACCAACCTATCCTTTCTCAAACCACGATTATACTCCGGAATCTCCGC 120
Query 121 CAGAGCTCCCAAATCCCTCCATTTCAAATTCAATCCTTCATGCCTCTCCTCCGGCTCCAA 180
|||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 121 CAGAGCTCCCAAATCCCTACATTTCAAATTCAATCCTTCCTGCGTCTCCTCCGGCCCCAA 180
Query 181 ATCCGACGATTCACCTCTATCCGAGAAGCTCATTTCGCTTCTCAAAGCTGTCCCTAACTG 240
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 181 ATCCGACGATTCACCTCTATCCGAGAAGCTCATTTCGCTGCTTAAAGCTGTCCCAAACTG 240
Query 241 GTCAGACGGCATCAAAGAGAGACGGATGGAGCAGAGACGCTCTCTCTACACTCACGAGAA 300
||| ||||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||
Sbjct 241 GTCTGACGGTATCAAAGAGAGACGGATGCAGCAGAAACGATCTCTCTACACTCACGAGAA 300
Query 301 TTGGGTCAGACACAGAAGCTCTCTTCGCCATCTGCGTCACGTATCTTCGAGTCCGTCCTC 360
||||||||||||||||||||||||||||||||| ||||||||||| ||||| || || ||
Sbjct 301 TTGGGTCAGACACAGAAGCTCTCTTCGCCATCTCCGTCACGTATCCTCGAGCCCATCTTC 360
Query 361 ACGCGTTATACTGTCTTTGATTCCGCCTGTTTTCTTCTTCACCACCGTCGCGTTCCTGAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 ACGCGTTATACTGTCTTTGATTCCGCCTGTTTTCTTCTTCACCACCGTCGCGATCCTGAT 420
Query 421 CGCCGGCTATAACTCCGCCGTGGATTTGGACTGGTTGCCTGATTTCTTCCCCGTCCTTCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 421 CGCCGGCTATAACTCCGCCGTGGATTTGGACTGGTTGCCTGATTTCTTCCCTGTACTTCG 480
Query 481 AGCTTCTCCTCTTCCGTATCAGCTTACGGCTCCGGCTTTAGCTCTGCTTCTGGTGTTTCG 540
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 AGCTTCTCCTCTACCGTATCAGCTTACGGCTCCGGCTTTAGCTCTGCTTCTAGTGTTTCG 540
Query 541 CACTGAGGCTTCTTATTCAAGGTTTGAACAAGGAAGGAAAGCTTGGGTTAAGATCATTAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CACTGAGGCTTCTTATTCAAGGTTTGAACAAGGAAGGAAAGCTTGGGTTAAGATCATTAG 600
Query 601 TGGAACCAATGATTTAGCTAGGTTAGTCATTTCTTCCGTTCACGGCTCCGGTGATGAAAT 660
|||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||| |
Sbjct 601 TGGAACCAATGATTTAGCTAGGCTAGTTATTTCTTCTGTTCATGGCTCCGGTGATGAATT 660
Query 661 GGTCATTAGAGATGCGCTTTTGCGTTACATTGTTGCTTTCCCTGTGGCGCTTAAGGTTTG 720
| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 661 GATCATCAGAGATGCGCTTTTGCGTTACATTGTTGCTTTCCCTGTGGCGCTTAAG-T--G 717
Query 721 TCATGTAATTTATGGTTCAGATATTGCTAATGATCTCCAGAATGTGATAGAAGCAGATGA 780
||||| |||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 718 CCATGTGATTTATGGTTCAGATATTGCTAGTGATCTCAAGAATGTGATAGAAGTAGATGA 777
Query 781 TCTGTCTTTGATTCTTCAATCGAAGCATCGTCCTCGTTGTGTCATTCAATTCATCTCTCA 840
||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 778 TCTGTCTTTGATTCTTCAATCCAAGCATCGTCCACGTTGTGTCATTCAATTCATTTCTCA 837
Query 841 GAGTCTTCAGCTGCTGAATTTGGACAGTACAAAGATAGATATGTTGGAATCAAAGATGAT 900
||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 838 GAGCCTTCAGCTGCTGAATTTGGATAGTACAAAGATAGATATGTTGGAAACAAAGATGAT 897
Query 901 GCAATTACAGGAAGGAATTGGTGTATGTGAACAACTGATGGGCATCCCGATTCCACTTTC 960
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 898 GCAATTACAGGAAGGAATTGGTGTATGTGAACAACTAATGGGAATTCCGATTCCACTTTC 957
Query 961 CTACACACGACTAACGTCGAGGTTCTTAGTCTTATGGCATCTTACGCTCCCTGTTATTCT 1020
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 958 CTACACACGACTAACGTCGAGGTTCTTAGTCTTATGGCATCTAACACTCCCTGTTATTCT 1017
Query 1021 CTGGGATGATTGCCACTGGAATGTAGTTCCTGCTACTTTCATCAGCGCTGCATCTCTCTT 1080
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1018 CTGGGATGATTGCCACTGGAATGTAGTCCCTGCTACTTTCATCAGTGCTGCCTCTCTCTT 1077
Query 1081 CTGCATTGAAGAAGTGGGTGTTCTTATAGAGGAGCCATTTTCAATGCTAGCTTTAGACGA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1078 CTGCATTGAAGAAGTGGGTGTTCTTATAGAGGAGCCATTTTCAATGCTAGCTTTAGATGA 1137
Query 1141 GCTATGTGCTATGGTGCTTAGTAATAGTGATGAAGCTGTTGAATCCAAAGAGGTCATACG 1200
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1138 GCTATGTGCTATGGTGCTTAGTAACAGTGATGAAGCTGTTGAATCCAAAGAGGTCATACG 1197
Query 1201 CAATCGGATCATAGCAAAGAAAAGGATCCGTGAAATTAAGCACTCATCAAATGGTTGGCA 1260
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1198 CAATCGAATCATCGCAAAGAAAAGGATCCTTGAAATTAAGCACTCATCAAATGGTTGGCA 1257
Query 1261 TCAATCTTGAAGTAATGAATGACAATATACTCTGTCTGATGGCT 1304
| ||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct 1258 TAAATCTTGAAGTAATGGATGCCAATATACTCTGTGTGATGGCT 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64156296510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5