BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483729
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45890.1 | Symbols: ATROPGEF4, ROPGEF4, RHS11 | RHO guanyl-n... 2004 0.0
> AT2G45890.1 | Symbols: ATROPGEF4, ROPGEF4, RHS11 | RHO guanyl-nucleotide
exchange factor 4 | chr2:18883473-18885566 FORWARD
LENGTH=1585
Length=1585
Score = 2004 bits (1085), Expect = 0.0
Identities = 1180/1226 (96%), Gaps = 6/1226 (0%)
Strand=Plus/Plus
Query 92 GGAACTCCGACGAGCTCTGTTTCTTCGCCATATCGGAGAACATACTCTGATATCTCCGGA 151
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 101 GGAACTCCGACGAGCTCTGTTTCTTCGCCGTACCGGAGAACATACTCAGATATCTCCGGA 160
Query 152 TTATCCCACCGGTTCGACGTTCAGAATTTTTATAACCGGCCGTCGAACACTAACGCTGTT 211
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 161 TTATCTCACCGGTTCGACGTTCAGAGCTTTTATAACCGGCCGTCAAACACTAACGCTGTT 220
Query 212 GTCTTGAGTGGCCATGAAGAAGATGTCTCCGAAGACGCCGTGGAACCAAAAGATGATGTC 271
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 221 GTCTTGAGTGGCCATGAAGAAGATGTCTCCGAAGACGCCGAGGAACCAAAAGATGATGTC 280
Query 272 GTC-A--A--T-GACGGAGATGGAGACGAGGAAGACAGCGACATTGATTCTGCAGAAGAT 325
||| | | | |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 281 GTCAACGACGTCCACGGAGATGGAGACGAAGAAGACAGCGACATTGATTCTGCAGAAGAT 340
Query 326 GCAGAGCTAGAGATGATGAGAGAAAGATTTGCGAAGCTATTGCTTGGTGAAGACATGTCA 385
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 341 GCAGAGCTAGAGATGATGAGGGAAAGATTTGCGAAGCTGTTGCTTGGTGAAGACATGTCA 400
Query 386 GGAAGTGGGAAAGGAGTTTGTACCGCTGTTACTGTCTCAAACTCCATAACCAATCTCTAT 445
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 401 GGAAGTGGGAAAGGAGTTTGTACTGCTGTTACTGTGTCAAACTCCATAACCAATCTCTAT 460
Query 446 GCGACTGTGTTTGGACAAAGTTTAAGGTTACAACCATTGAGTACAGAGAAGAAAGAGTTA 505
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 461 GCGACTGTGTTTGGACAGAGTTTAAGGTTACAACCATTGAGTACAGAGAAGAAAGACTTA 520
Query 506 TGGAAGCGAGAGATGAATTGTTTCATGTCTATTTGTGATTACATTGTCGAAGTTATTCCA 565
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TGGAAACGAGAGATGAATTGTTTCATGTCTATTTGTGATTACATTGTCGAAGTTATTCCA 580
Query 566 AGATCTCTTGGTACTAACGTTGAGATAACAGAAACAAAGCTAAGATCTGATATTCTCATG 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 AGATCTCTTGGTACTAACGTTGAGATAACAGAAACAAAGCTAAGATCTGATATTCTCATG 640
Query 626 AGTCTTCCTGCTTTGAGAAAACTCGATAATATGCTAATGGAGATATTGGATAGTTTTACG 685
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 641 AGTCTTCCTGCTTTGAGAAAACTCGATAACATGCTAATGGAAATATTGGATAGTTTTACG 700
Query 686 GAGAACGAGTTCTGGTACGTTGAAAGAGGAAGCTCATCGATGAACTCGAGCGGTGGTGGC 745
|| |||||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 701 GAAAACGAGTTCTGGTATGTTGAAAGAGGAAGCTCATCGATGAACTCGGGTGGTGGTGGT 760
Query 746 AGAGATTCAGGAACGTTTAGGAAAGTGGTGGTTCAACGGAAAGACGAGAAGTGGTGGCTT 805
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 761 AGAGATTCAGGAACGTTTAGGAAAGTGGTGGTTCAACGGAAAGACGAGAAATGGTGGCTT 820
Query 806 CCGGTGCCATGTGTTCCTGCTGAAGGTTTATCGGAAGAAGAACGAAAGAATTTGCGTCAC 865
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 821 CCGGTGCCATGTGTTCCTGCTGAAGGTTTATCTGAAGAAGAACGAAAGCATTTGCGTCAC 880
Query 866 AAACGTGATTGTGCCAGTCAGATACATAAAGCAGCATTGGCCATTAACGATTCCACTCTT 925
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 AAACGCGATTGTGCCAGTCAGATACATAAAGCAGCATTGGCCATTAACGATTCCACTCTT 940
Query 926 AATGACATGGATATTCCTGATTCTTATCTCACCACTCTTCCAAAGAGTGGGAAAGCAAGT 985
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 941 AATGACATGGATATTCCTGATTCTTACCTCACCACTCTTCCAAAGAGTGGGAAAGCAAGT 1000
Query 986 GTAGGAGACGTGATATACAAGCAACTGTGCACTGCCGAGAAGTTTTATCCTGACCAGCTT 1045
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1001 GTAGGAGACGTGATTTACAAGCAACTGTGCACAGCCGAGAAGTTTTATCCCGACCAGCTT 1060
Query 1046 CTCGACGTCTTGAAGATAACATCTGAGCATGAGGCGCTTGAGCTCGCCGACAAAGTTGAG 1105
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 CTCGACATCTTGAAGATCACATCTGAGCATGAGGCGCTTGAGCTCGCCGACAAAGTTGAG 1120
Query 1106 GCTTCACTAGTTACGTGGAGGCGTAAGACTGGAGGATTGACTCACTCCAAGTCCTCATGG 1165
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1121 GCTTCACTAGTTACGTGGAGGCGTAAGACTGGAGGATTGACTCACTCTAAGTCCTCATGG 1180
Query 1166 GACATGATGAAAGATATCGGTGGCGATGCAGATCGTGGCAATGACAAGAACCACATTCTT 1225
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1181 GACATGATGAAAGATATCAGTGGCGATGCAGATCGTGGCAATGACAAGAACCACATACTT 1240
Query 1226 GCGGCTCGAGCAAGGAGCTTACTTTTCTGTCTGAAACAGAGATACCCCGAACTTTCTCAG 1285
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1241 GCGGCTCGAGCCAGGAGCTTACTCTTCTGTCTGAAACAGAGATACCCTGAACTTTCTCAG 1300
Query 1286 ACCTCACTTGACATCTGCAAGATTCA 1311
||||||||||||||||||||||||||
Sbjct 1301 ACCTCACTTGACATCTGCAAGATTCA 1326
Score = 211 bits (114), Expect = 1e-53
Identities = 123/127 (97%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 1312 CTATTCGAGGGTTTTAGAAGGTTTGGCTTATAATGTTGTGTCGTGGATTGATGATGTTCT 1371
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 CTATTCAAGGGTTTTAGAAGGTTTGGCTTATAATGTTGTGTCGTGGATTGATGATGTTCT 1422
Query 1372 TTACGTCGACAGAACAGTGAGGAACAGAGAGGATTAGGGTTTT-CATACTGAGTTTTTTC 1430
||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct 1423 TTACGTCGACAGAACAGTGAGAAACAGAGATGATTAGGGTTTTTCATACTGAGTTTTTTC 1482
Query 1431 TTTTGAG 1437
|||||||
Sbjct 1483 TTTTGAG 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73895202240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5