BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483730
Length=2109
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45900.1 | Symbols: | Phosphatidylinositol N-acetyglucosami... 1458 0.0
> AT2G45900.1 | Symbols: | Phosphatidylinositol N-acetyglucosaminlytransferase
subunit P-related | chr2:18886069-18888674
REVERSE LENGTH=2163
Length=2163
Score = 1458 bits (789), Expect = 0.0
Identities = 884/931 (95%), Gaps = 2/931 (0%)
Strand=Plus/Plus
Query 1175 ACAACTATGAAGAAACAGAGTTTATGCCATTTCCGGAAGACACTGGGATGGAAGAGGAAG 1234
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1229 ACAACCATGAAGAAACAGAGTTTATGCCAGTTCCGGAAGACACTAGGATGGAAGAGGAAG 1288
Query 1235 AGAAGACTGTTCTCGATTCGTTGTCTGAAGAAATTAGCTCTTCCATTATCCAACAAGATG 1294
|| |||||||| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1289 AGCAGACTGTTATGGATTCGTTGTCTGAAGCAATTAGCTCTTCCATTATCCAACAAGATG 1348
Query 1295 CATATGTTGATGAGGATGAGCAGAAGCAACTCTTGGAAAAGGAAGTACTCGACGAAGGG- 1353
||||| |||||||||||||||| || ||||| |||||||||||||||||| | | ||||
Sbjct 1349 CATATATTGATGAGGATGAGCACAAACAACTTTTGGAAAAGGAAGTACTCAAAG-AGGGA 1407
Query 1354 CGATTACCGTGTTCTCCACCAAACTCTTCAGTGAGAATGTCTGAATGCCAAGAAAATACC 1413
| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1408 CAATCACCGTGTTCTCCACCAAACTCTTCAGTGAGAATGTCTGAATGCCAAGAAAACACC 1467
Query 1414 ACAGATGTATTGGGAAAGTCAAGTCCTGTGTCGGTTCTTGAGCCTCTCTTTACAGATGAT 1473
||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||||
Sbjct 1468 ACAGATGTATTGGGAAAGTCAAGTCCTGTATCTGTGCTTGAGCCTTTCTTTACAGATGAT 1527
Query 1474 GACACTAGTCCAAACAGCTCCAGGTTCTCTTCAGCCGAAGTGCGGATGCAACCACTGTGC 1533
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1528 GACACTAGTCCAAACAGCTCCAGGTTCTCTTCAGCCGAAATGCGGATGCAACCACTGTGC 1587
Query 1534 ATAAGATTCGACGAAGCTGATTCTCCAAGACCGGAGAAAGACAATGATGCCAAAACTAGA 1593
||||||||||||||| |||||| |||| ||||||||||||||||||||| |||||| |||
Sbjct 1588 ATAAGATTCGACGAACCTGATTTTCCAGGACCGGAGAAAGACAATGATGTCAAAACAAGA 1647
Query 1594 ATGGATGACAAGGAATTGGCACTTGAATACATTCAAGCCGTGGTGAAATCCTCAGAGTTG 1653
||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1648 ATGGACGACAAGGAACTGGCACTTGAATACATTCAAGCCGTGGTGAAATCATCAGAGTTG 1707
Query 1654 AACTGGGAAGAGCTTTTGGCGAGATCTTTTTATTCGGAGAAGATTCTTGAGCAGGCTCTA 1713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 AACTGGGAAGAGCTTTTGGCGAGATCTTTTTATTCGGAGAAGATTCTTGAGCAGGCTCTA 1767
Query 1714 ATGGATGACATAGATTTCTGTTCGACAAATCTATGCAGCGATAAGAAACTCCTTTTTGAC 1773
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1768 ATGGATGACATAGATTTCTGTTCGACAAATCTCTGCAGCGATAAGAAACTCCTTTTTGAC 1827
Query 1774 TGTATCAATGAAGTTCTTATGGAGTTTTGTGGACATGGCCCTTGGATTTCATTCGTCAAA 1833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 TGTATCAATGAAGTTCTTATGGAGTTTTGTGGACATGGCCCTTGGATTTCATTCGTCAAA 1887
Query 1834 CCTTCAATACGGTTTTTTCCAGACATGGAAAATGCTGTTGAAGTGGTACAAGAAGAAGTT 1893
||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1888 CCTGCAATGCACTTTTTTCCAGACATGGAAAATGCTGTTGAAGTGGTACAAGAAGAAGTT 1947
Query 1894 TACTGGCATCTCTTACCTTTGCCTTCTCCTCACACACTAGACCAGATAGTGCAGAAAGAC 1953
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1948 TACTGGCATCTCTTACCTTTGCCATCTCCTCACACACTAGACCAGATAGTGCGGAAAGAC 2007
Query 1954 CTGGCTAGGACTGGAAACTGGATGGACCTCCACTTTGATATTGGTTGCATCGGTTCTGAA 2013
|||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct 2008 CTGGCTAGGACTGGAAACTGGATGGATCTCCGCTTTGATATTGGTTGCATCGTTTCTGAA 2067
Query 2014 ACAGGTGAAATAATCCTTGATGAACTATTAGAAGAGATAATCAGCAACTGCACAGACTTG 2073
||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||
Sbjct 2068 ACAGGTGAAATAATCCTTGATGAACTACTAGAAGAGATAATCAGCAATTGCAGAGACTTG 2127
Query 2074 GTCCAACCTGAAACAATCAACAAGGTGATTC 2104
||||||||||||| |||||||||| || |||
Sbjct 2128 GTCCAACCTGAAAGAATCAACAAGCTGGTTC 2158
Score = 839 bits (454), Expect = 0.0
Identities = 640/723 (89%), Gaps = 40/723 (6%)
Strand=Plus/Plus
Query 476 GCTGCAAGAAGAACCTGGACGATGCATTTCAGGTCTTGGATTCTAAAGAAGAATCATTCT 535
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 512 GCTGCAAGAAGAACCTGGTGGATGCATTTCAGGTCTTGGATTCTAAAGAAGAATCA---T 568
Query 536 TGAATATCGGTACGCCAATTTCAAGAGATTCTCAGAGAATCAATGAGCTGACACAATGTA 595
||||||||||||| |||| ||| ||||||||||||||||||| || |||||
Sbjct 569 TGAATATCGGTACACCAACTTCGGGAGATTCTCAGAGAATCAA--AG-AGACAC------ 619
Query 596 GACATACAATTGTAATTTTGAAGCCTGAACCAAATAGCTTGGATGTTGGATCATCACCTG 655
| | ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 620 -A-A-ACAATTGTAATTTTGAAGCCTGAACCAAATACCTTGGATGTTGGATCATCGCCTG 676
Query 656 GAACACCTTCTACAGACAACAAGACCAAAAATGGGAGGTTCAGTTCTCGCTTTATTCTCA 715
||||||||||||||||||||||| ||||||||| || |||||||||||||||| |||||
Sbjct 677 GAACACCTTCTACAGACAACAAGGCCAAAAATGAGAAATTCAGTTCTCGCTTTAGTCTCA 736
Query 716 GTAGAATCAGAAGAAGACTAAAGTTTGCTGTTGGAAATAATCCATGCAATGCTCAACATG 775
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 737 GTAGAATCAGAAGAAGACTAAAGTTTGCGGTTGGAAAGAATCCATGCAATGCTCAACATG 796
Query 776 ACTCTGATCATGATCC---T---GATGCATTGTCGTCTAACATGAGTCAAAACTGTTGTT 829
||||||||| |||||| | |||||||||||||||| ||||||||||||||||||||
Sbjct 797 ACTCTGATCCTGATCCTGATGCAGATGCATTGTCGTCTAGCATGAGTCAAAACTGTTGTT 856
Query 830 TGGGAGAAGCGATAGAGACTAATCCCGGGAAGGGTGTTTCGGATGGAGAAA-CATTGCCT 888
||||||||| ||||||||| |||||| || | ||||||||||||| | ||||||
Sbjct 857 TGGGAGAAGAGATAGAGACCAATCCC------GG-G--TCGGATGGAGAAATC-TTGCCT 906
Query 889 GACATTGCTTCAAAACGTGAGGCTAATAAGGAGGACACTATCCATGAAAGTG---AAGAC 945
||||||||||||||| ||||||||||||| ||||| ||| |||||||||||| ||||
Sbjct 907 GACATTGCTTCAAAAGGTGAGGCTAATAAAGAGGATACTTTCCATGAAAGTGAAAAAGAT 966
Query 946 TCGAAAAAGAATATGTGTGGTATATACATTGCCGCCAAGAAACACCTGTCTGAAATGCTT 1005
|| || |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 967 TCCAAGAAGAGTATGTGTGGCATATACATTGCTGCCAAGAAACACCTGTCTGAAATGCTT 1026
Query 1006 GCAGAAGGAGAC---GATGCTGA-TTCACCGGATAAGGAAGTACCAAGAATTCTTGGAAA 1061
|||||||||||| |||||||| || ||||||||| |||||||||||||| ||||| ||
Sbjct 1027 GCAGAAGGAGACATAGATGCTGACTT-ACCGGATAAAGAAGTACCAAGAATCCTTGGGAA 1085
Query 1062 GATTCTTGCTCTCCCTGAGTTCTCCACACCAGACAACAGTCCTAGAGTGGCCTTGGCACT 1121
||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||
Sbjct 1086 GATTCTTGCTCTCCCTGAGTTCTTCACACCAGAAAACAGTCCTAGAGTGACCTTGGCACT 1145
Query 1122 TGATCATCAGCTAGTCGATAAACCAAAGATTCAGCAGTGTAGTTCAGAAGATTACAACTA 1181
|||||||||| || |||| |||||||| ||||||||||| |||||| |||||||| ||||
Sbjct 1146 TGATCATCAGATAATCGAAAAACCAAATATTCAGCAGTGCAGTTCAAAAGATTACTACTA 1205
Query 1182 TGA 1184
|||
Sbjct 1206 TGA 1208
Score = 693 bits (375), Expect = 0.0
Identities = 449/483 (93%), Gaps = 11/483 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAAAGAGATTTGTAGAAGACATCTTTCAAGAGAAGGGATAGGATGTGTTTGGGTG 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGAGAAAGAGATTTGTAGAAGACATCTTTCAAGAGAAGGGCTAGGATGTGTTTGGGTG 60
Query 61 TTTATGAGCATGTTTGATTTCAGACATGGTGGATCTAACCAGAAGCTTTTGATGGATAAG 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTATGAGCATGTTTGATTTTAGACATGGTGGATCTAACCAGAAGCTTTTGATGGATAAG 120
Query 121 AAACGTGGAAGCAA-ACGAATCAT-A--GGTAATAATGGAATGTTTGACACTAAGGTTGA 176
|||||| ||||||| | ||||||| | |||||||||||| ||||||| |||||||||||
Sbjct 121 AAACGTCGAAGCAAGA-GAATCATCATAGGTAATAATGGAGTGTTTGAGACTAAGGTTGA 179
Query 177 GAAGCAGCTTACTTGTGACTGTGACTATGACTGTGAGGAGAGTGAAGCTGATATGCAGAG 236
|||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||
Sbjct 180 GAAGCAGCTTACTTGTGACTGTGACTGTGA-TG--AGGAGAGTGAAGCTGAAATGCAGAG 236
Query 237 TGTCAAGAAACTCATAGAAGATGAGATTGATGAGAAGACTAAGCAAAAGTGTGAGGCGAG 296
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 237 TGTCAAGAAACTCATAGAAGCTGAGATTGATGAGAAGACTACGCAAAAGTGTGAGGCGAG 296
Query 297 AAACCGAAAGAGGAGAAGTAGAACCTGCAGCAAAATCAGTGAGGATATCAATGTTTTGAT 356
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 297 AAACCGAAAGAGGAGAAGTAGGACCTGCAGCAAAATCAGTGAAGATATCAATGTTTTGAT 356
Query 357 TGTTGGTGATGATGATGAT---CATGCAGAGAAAGCAGATGATCAGTGTCCGAGAATTTC 413
|| |||||||||||||||| |||||||||||| ||||| || ||||||||| | ||||
Sbjct 357 TGCTGGTGATGATGATGATGATCATGCAGAGAAATCAGATAATGAGTGTCCGATAGTTTC 416
Query 414 TCAGAATGAGGTGGATTTGGTACCTGATGATTCCGAAGAGAAGTTCAGCGAGTTGATAAA 473
||| || || |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 417 TCATAACGAAGTGGATATGGTAAATGATGATTCCGAAGAGAAGTTCAGCGAGTTGATAAA 476
Query 474 GCG 476
|||
Sbjct 477 GCG 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104567735235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5