BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483733
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1853 0.0
AT4G16090.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 494 1e-138
> AT2G45930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G16090.1); Has 161
Blast hits to 161 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:18901392-18902798
REVERSE LENGTH=1314
Length=1314
Score = 1853 bits (1003), Expect = 0.0
Identities = 1131/1193 (95%), Gaps = 7/1193 (1%)
Strand=Plus/Plus
Query 19 ACCCTTCGGATGTTCTCCTCCT--T-TACTACCACCAACCCGTACTTGATGTATAATCTG 75
|||||||| ||||||||||||| | || ||||||||||| |||||||||| || ||||
Sbjct 114 ACCCTTCGTATGTTCTCCTCCTCCTCCACCACCACCAACCCTTACTTGATGTTTAGTCTG 173
Query 76 ATACATAATGGAAGTTCTTTGGATGACATCGATATAACAAGCGCTATACACTATTTTGAC 135
|||||| ||||||||| ||||||||| || ||| |||||||| |||||||||||||||||
Sbjct 174 ATACATTATGGAAGTTGTTTGGATGATATTGATGTAACAAGCACTATACACTATTTTGAC 233
Query 136 CCGGCCAAGGAAGATGAAGTTATTGTCCGAGACAGGGCCTTTCCCATGGAGTTGCGTAAT 195
|||| ||||||||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct 234 CCGGTCAAGGAAGATGAAATTATTGTCAGAGACAAGGCCTTTCCCATGGAGTTGCGTAAT 293
Query 196 ACGAGTCTGGTTGGAATGTCCCATGGATGGGGAGTTTTCAATGTGGAGACTGGTGATGGT 255
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 294 ACGAGTCTGGTTGGAATGTCCCACGGATGGGGAGTTTTCAATGTGGAGACAGGTGATGGT 353
Query 256 AGACATAAAGCCGTTTATGTTAGCGACTTCTGCAATCCTTGTGGCTCCAAAACAAATCCC 315
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 354 AGACATAAAGCCGTTTATGTTAGCGACTACTGCAATCCTTGTGGCTCCAAATCAAATCCC 413
Query 316 AAAATCATTCCTTTGCATCCCATGCATCCCATTGGTAAACCTAATATTACCCAATTACGC 375
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 414 AAAATCATTCCTTTGCATCCCATGTATCCCATGGGTAAACCTAATATTACTCAATTACGC 473
Query 376 CTCATCACTAATGCTGCAATGACTTGTTCACCTGATCAAAGTAAAGATTTTGTAGTAGCT 435
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 474 CTCATCACTAACGCTGCAATGACTTGTTCACCAGATCAAAGTAAAGATTTTGTAGTGGCT 533
Query 436 GCCAATTGTTTAGGACTTGAGATCCATTTCTTTAGGCCTTGTGGCAAAACCAAGAACTAC 495
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 534 GCCAATTGTTTAGGACTTGAGATCCATTTCTTTAGGCCTTGTGGCAAAACTGACAACTAC 593
Query 496 TCTGGTTTAGGCTTTAAAACCGAATCCCACTATTTTGATCAGTCAAAGGTTATGTATTCA 555
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 594 TCGGGTTTAGGCTTTAAAACCGAATCCCACTTTTTTGATCAGTCAAAGGTTATGTATTCA 653
Query 556 AAGAAAGATCAAAAGTTCTACACTCCTAGTGTTGGAGGCCACTTGTTGGGTTTCTGGGAT 615
|||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 654 AAGAGAGATAAAAAGTTCTACACTCCTAGTGTTGGAGGCCATTTGTTGGGTTTCTGGGAT 713
Query 616 TCTTGCTTCGAGGATTTGAGTTGCGGTTTTGCAACCTTCCTGAGGTGACCCAGTCCGAGT 675
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 714 TCTTGCTTCGAGGATTTGAGTTGCGGTTTTGCAACCTTCCTGAGGTGACACAGTCCGAGT 773
Query 676 GGGAGCTCTTGGACTCCTG-TCCTCCGCCGACTGTACACCTTGTGGAGTCTCCCTCAGGA 734
|||||||||||||||| || ||| ||||||||||||||||| || |||||||||||||||
Sbjct 774 GGGAGCTCTTGGACTCATGTTCC-CCGCCGACTGTACACCTCGTTGAGTCTCCCTCAGGA 832
Query 735 CAGCGTTTCCTAATCAAGTGGTATGCTCAGAACTACCAACCGGGCGAGAGGATGACATTC 794
|||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 833 CAGCGTTTCCTAGTCAAGTGGTACGCTCAGAACTACAAACCGGGCGAGAGGATGACATTC 892
Query 795 TTGTGTCGCGGAACAAAGCGTTTCATGGTGTTTAGAGAGGAGGAAGATATGAACATGTGT 854
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 893 TTGTGTCGTGGAACAAAGCATTTCATGGTCTTTAGAGAGGAGGAAGATATGAACATGTGT 952
Query 855 TACACGGAGGACATTGGAGATCTCTGCATATTCCTCGGCAGAAGTGAGCCCTTTTGTGTC 914
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 953 TACACTGAGGACATTGGAGATCTCTGCATATTCCTCGGCAGAAGTGAGCCCTTCTGTGTC 1012
Query 915 AAGGCAAGCTCATTCCCTGGCCTAAATCCTAACTCCATCTATTTTGCAGGCGATGGCTTT 974
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1013 AAGGCAAGCTCATTCCCTGGCTTAAACCCTAACTCCATCTATTTTGCAGGCGATGGCTTT 1072
Query 975 GGTGTTTACGATATCGCCACTAGAAAACCACGTTCCTT-CTGTCCCAAGTCTCCCTCAGC 1033
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1073 GGTGTTTACGATATCGCCACTAGAAAACCACGTTCCTTTC-GTCCCAAGTCTCCCTCAGC 1131
Query 1034 CTTCTCAACAACACCACTCTTCCCTTACTGGATCCCTCCAATGTCTCTCTAGTTACTAGG 1093
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1132 CTTCTCCACAACACCACTCTTCCCTTACTGGATCCCTCCAATGCCTCTCTAGTTACTATG 1191
Query 1094 CAAACTTCACTAGTTATTCTCTTCTTGTATTTTAGGTGGTGGATCCAATATAGAATCCAG 1153
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1192 CAAACTTCATTAGTTATTCTCTTCTTGTATTTTAGTTGGTGGATCCAATATAGAATCCAG 1251
Query 1154 TTTCTCGTTTCACTTTGTGTTATGTAAACTCAAAAGAAACTAATGAAGACATG 1206
||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1252 TTTCTTGTTTCACTTTGTGTTATGTAAACTCGAAAGAAACTAATGAAGACATG 1304
> AT4G16090.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G45930.1); Has 76 Blast
hits to 76 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr4:9103040-9103965
FORWARD LENGTH=845
Length=845
Score = 494 bits (267), Expect = 1e-138
Identities = 621/781 (80%), Gaps = 68/781 (9%)
Strand=Plus/Plus
Query 9 GAGACGCCACACCCTTCGGATGTTCTCCTCCTTTACTACCACCAACCCGTACTTGATGTA 68
|||| ||||||| ||||||||||| |||||| | ||||||||||||| |||||| ||||
Sbjct 95 GAGATGCCACACTCTTCGGATGTTTTCCTCC--T-CTACCACCAACCCTTACTTGTTGTA 151
Query 69 TAATCTGATACA-TAATGGAAGTTCTTTGGATGACA-TCGATATAACAAGCGCTATACAC 126
| | | ||| | | ||||||||||| ||||||| | || || ||||||| ||| |||
Sbjct 152 TCGTGTCATAAACT-ATGGAAGTTCTATGGATGATATTC-ATGTAACAAGTAATATCCAC 209
Query 127 TATTTTGACCCGGCCAAGGAAGATGAAGTTATTGTCCGAGACAGGGCCTTTCCCATGGAG 186
||||||||||||| |||||||||||||||||||||||||||| || || || ||||||
Sbjct 210 TATTTTGACCCGGTGAAGGAAGATGAAGTTATTGTCCGAGACAAGGTATTACCAATGGAG 269
Query 187 TTGCGTAATACGA-GTCTGGTTGGAATGTCCCATGGATGGGGAGTTTTCAATGTGGAGAC 245
|||||||| | | ||||||| |||||||||||||| |||||||||||||| | | |
Sbjct 270 TTGCGTAA-AGGGTGTCTGGTCGGAATGTCCCATGGTTGGGGAGTTTTCAAGGCCGTGTG 328
Query 246 TGGTGATGGTAGAC-ATAAAGCCGTTTATGTTAGC-GACTTCTGCAATCCTTGTGGCTCC 303
|| | || | || |||||||| | ||||||| | |||| || |||||| |||||||||
Sbjct 329 TGATTATAAT-GAATATAAAGCCATATATGTTA-CTGACTACTACAATCCATGTGGCTCC 386
Query 304 AAAACAAATCCCAAAATCATTCCTTTGCATCCCATGCATCCCATTGGTAAACCTAATAT- 362
||| | || |||| |||||||||||||||| | | | |||||||||| ||
Sbjct 387 AAATCTG-TC--AAAAGCATTCCTTTGCATCCC---C-T----T-GGTAAACCTA-TAGC 433
Query 363 TACCCAATTAC--GCCTCATCACTAATGCTGCAATGACTTGTTCACCTGATCAAAGTAAA 420
|| |||| || || | |||||||| || |||||||||||||||||||||||||| |||
Sbjct 434 TATCCAACAACAAGC-T-ATCACTAACGCCGCAATGACTTGTTCACCTGATCAAAGCAAA 491
Query 421 GATTTTGTAGTAGCTGCCAATTGTTTAGGACTTGA-GATCCATTTCTTTAGGCCTTGTGG 479
||||||| ||| |||| ||| |||||||||| | | |||| ||||| ||||||| ||||
Sbjct 492 GATTTTGCAGTTGCTGTCAAGTGTTTAGGACCT-ATGATCAATTTCAATAGGCCTGGTGG 550
Query 480 CAAA-ACCAAGAACTACTCTGGTTTAGG-C-T-TT-AAAACCGAATCCCACTATTTTGAT 534
|| | || ||| ||| | |||| || | | || |||||| | || |||||||||
Sbjct 551 CACACAC-AAGGACT-CG--GGTTC-GGTCATCTTTAAAACCCCTTTTCAATATTTTGAT 605
Query 535 CAGTCAAAGGTTATGTATTCAAAGAAAGATCAAAAGTTCTACACTCCTAGTGTTGGAGGC 594
|| |||||||||||||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct 606 CAATCAAAGGTTATGTATTCAAAGAGAGATGAAAAGTTCTACACTCCTAGTTTTGGAGGG 665
Query 595 CACTTGTTGGGTTTCTGGGATTCTTGCTTCG-AG-G-AT-T-------T--GAGTTG--- 638
||||| |||| ||| |||||||||| ||||| || | || | | ||||||
Sbjct 666 CACTTCTTGGTTTTTTGGGATTCTTTCTTCGGAGAGGATATGACCGGCTCTGAGTTGGTT 725
Query 639 ------CGGTTTTGCAACCTTCCTGAGGTGACCCAGTCCGAGTGGGAGCTCTTGGACTCC 692
|||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 726 GAGTTGCGGTTTTGCAACGTTCCTAAGTTGACCCAGTCCGAGTGGGAGCTCTTGGACTCA 785
Query 693 TGTCCTCCGCCGACTGTACACCTTGTGGAGTCTCCCTCAGGACAGCGTTTCCTAATCAAG 752
||| ||| ||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 786 TGT--TCCAA-GACTGTATACCTTGTGGAGTCTCCCTCAGGCCAACGTTTCCTAATCAAG 842
Query 753 T 753
|
Sbjct 843 T 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5