BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483735
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45950.2 | Symbols: ASK20, SK20 | SKP1-like 20 | chr2:189043... 2102 0.0
AT3G61415.1 | Symbols: ASK21, SK21 | SKP1-like 21 | chr3:227227... 1077 0.0
> AT2G45950.2 | Symbols: ASK20, SK20 | SKP1-like 20 | chr2:18904324-18907814
REVERSE LENGTH=1808
Length=1808
Score = 2102 bits (1138), Expect = 0.0
Identities = 1298/1370 (95%), Gaps = 31/1370 (2%)
Strand=Plus/Plus
Query 20 CTTCCACATTGCTTGGCCGCAGCCGCCGCCGCCGTCCGCCGTCGATATCCACCACCAGAT 79
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 55 CTTCCACATCGCTTGGCCGCA---GCCGCCGCCGTCCGCCGTCGCTATCCACCACCAGAT 111
Query 80 TTTAAATCCTCCGCCGGAAGTCCACCTTCATTACCCAATATCTGTTATAAGTTTGGTGGA 139
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 112 TTTAAATCC-CCGCCGGAAGTTCACCTTCAATACCCAATATCTGTTATAAGTTTGGTGGA 170
Query 140 TGGAGTTGCTGGATATTGCTTAAGATCGCCATCTGACTTCAAATCTCATAGACCTGAGTA 199
|| |||||||||||||||||| |||||| |||||||| ||||| ||||||| ||||||||
Sbjct 171 TGAAGTTGCTGGATATTGCTTGAGATCGTCATCTGACCTCAAAACTCATAGTCCTGAGTA 230
Query 200 CTTTGCTACTTGGCGTATTTATTTTATCTGGGTGGCCATTTTTGTCCTGAAAAGCTTCAG 259
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 231 CTTTGCTACTTGGCGTATTTATTTTATCTGGTTGGCCATTTTTGTCCTGAAAAGCTTCAG 290
Query 260 GATGTAAGGAAAACAGAGAC--------------TTTG---TA--TA--GGAGCTGAAGG 298
||| |||||||||||||||| |||| || || |||||||| ||
Sbjct 291 GATTTAAGGAAAACAGAGACTTTGTATAGTAGGGTTTGTCCTACTTATTGGAGCTGATGG 350
Query 299 TGTAATAATA-ATTATAATTGCAGAAGACTGCGTCATCAAATCTATTATCAATGTCAGAA 357
|||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TGTAATAATACA-TATAATAGCAGAAGACTGCGTCATCAAATCTATTATCAATGTCAGAA 409
Query 358 GGTGATTTGGCCGTCATGAAACCAGAGACCATGAAGTCCTACATCTGGCTTCAAACTGCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 GGTGATTTGGCCGTCATGAAACCAGAGACCATGAAGTCCTACATCTGGCTTCAAACTGCT 469
Query 418 GATGGTTCAATCCAGCAAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATATGTCAA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 470 GATGGTTCAATCCAGCAAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATTTGTCAA 529
Query 478 GAGGTAATACAAAAGGGTGTTGGATCTTCTAAGAATCATGCAATATCGCTTCCACAACGA 537
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 530 GAGGTAATACAGAAGGGTGTTGGATCCTCTAAAAATCATGCAATATCGCTTCCACAACGA 589
Query 538 GTTAATCCAGCTATGTTCAGCTTGATTCTTGATTATTGCAGATTTCATCAACTGCCTGGA 597
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 590 GTTAATCCAGCTATGTTCAGCTTGATTCTTGATTACTGCAGATTTCATCAACTGCCAGGA 649
Query 598 CGTTCAAATAAGGAACGAAAAACTTATGATGAAAGATTCATCAGAATGGACACAAAAAGG 657
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 650 CGTTCAAATAAGGAACGAAAAACTTATGATGAAAGATTCATCCGAATGGACACAAAGAGG 709
Query 658 CTCTGTGAGTTGACCTCAGCCGCTGATAGTTTGCAGCTGAAGCCTTTGGTTGATCTTACT 717
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 710 CTCTGTGAGTTGACCTCTGCCGCTGACAGTTTGCAGCTGAAACCTTTGGTTGATCTTACT 769
Query 718 AGTTGCGCACTTGCAAGAATCATTGAAGGAAAAACCCCTGAGGAGATACGAGAAATATTT 777
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 770 AGTCGCGCACTTGCAAGAATCATTGAAGGAAAAAACCCTGAGGAGATACGAGAAATATTT 829
Query 778 CATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAGCCTCTGAAGAACACAATGGAT 837
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 830 CATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAGCCTCTGAAGAACTCAATGGAT 889
Query 838 GATCCACGGATTCGACTACTGAATAGATTATATGCaaagaaaagaaaggagctgaaagaa 897
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 890 GATCCACGGATTCGACTACTGAATAGATTATATGCAAAGAAAAGAAAGGAACTGAAAGAA 949
Query 898 agagagagattgaagaatgttgaggttgaagaaCACGTGGACGAACGTTCTGTGGATGAC 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AGAGAGAGATTGAAGAATGTTGAGGTTGAAGAACACGTGGACGAACGTTCTGTGGATGAC 1009
Query 958 CTGTTATCATTTATTAATGGCAGAGATTC-CAAGG-TGGTaaagatgtcaaagggaaaaa 1015
||||||||||||||||| ||||||||| | ||||| || |||||||||||||||||||||
Sbjct 1010 CTGTTATCATTTATTAACGGCAGAGAT-CACAAGGCTG-TAAAGATGTCAAAGGGAAAAA 1067
Query 1016 agaagaagaagaaaaagaaggatcagaagaTTGTTTCTTCAAATGACATTCATGACAAGG 1075
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1068 AGAAGAAAAAGAAAAAGAAGGATCAGAAGATTGTTTCTTCAAATAACATTCATGACAAGG 1127
Query 1076 AATCACATGATCTTCATTCCAAACAACAATGTGTTGAAGAGACTGGGTCCAGCATGAGAG 1135
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1128 AATCACATGATCTCCGTTCCAAACAACAATGTGTTGAAGAGATTGGGTCCAGCATGAGAG 1187
Query 1136 AGGTACCCAACTTACCTAGTGCAGAAGATGACATTTCTACGCCAAAGGCCGGGTCTGAAG 1195
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1188 AGGTACCCAACTTACTTAGTGCAGAAGATGACATTTCTACGCCAAATGCCGGGTCTGAAG 1247
Query 1196 ATGAAGATATAGACGATGAAATCGATCCAGCCATGAGGGAATTGCTTGATAGAGAGGTAG 1255
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1248 ATGAAGATATAGACGATGAAATCGATCCAGCCATGAGGGAACTGCTTGATAGAGAGGTTG 1307
Query 1256 AAGATTTTGCTCAAAGACTGAACTCCAATTGGGTTCGGTCGCTAGGACAAGAAAGAAGGT 1315
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1308 AAGATTTTGCTCAAAGACTGAACTCCAATTGGGTTCGGTCGCTAGGAAAAGAAAGAAGGC 1367
Query 1316 CTGTACACTTCTCCATAAATGGCAACGGGACTACAAGACGGCATACAGGT 1365
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 CTGTACACTTCTCCATAAATGGCAACGGGACTACAAGACGGCATACAGGT 1417
Score = 320 bits (173), Expect = 3e-86
Identities = 255/290 (88%), Gaps = 23/290 (8%)
Strand=Plus/Plus
Query 1362 AGGTCAATCTCCATGACACGATTGGAGCTGAAAATGGAACAGTTTTGG-T---TATGTGA 1417
|||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||
Sbjct 1506 AGGTCAATCTCCATGACACGATTGAAGCTGATAATGGAACAGTTTTGGTTAAGTATGTGA 1565
Query 1418 GCAAATagagag-agagagaATGGTTCACCAGTCAGTCACCACCGGCGTTTGATGCGTGT 1476
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 GCAAATAGAAAGAAAAGAGAATGGTTCACCAGTCAGTCACCACCGGCGTTTGATGCGTGT 1625
Query 1477 CCTCATGTAACAGTTTTGATTTTGATTGTTTTACTTTCTTCTAGTGATCCATCCTTTTCT 1536
||||| ||||||||||||||||||||||||||||| || |||||| |||||| ||||||
Sbjct 1626 CCTCACGTAACAGTTTTGATTTTGATTGTTTTACT--CT-CTAGTGGTCCATCTTTTTCT 1682
Query 1537 TTGTAAAACCACGTTTCTACGTTAGCt-ttttttttGT--------GT-TT-AGGTTCCA 1585
||||||| ||||||| ||||||||| | |||||||||| || || ||||||||
Sbjct 1683 TTGTAAACCCACGTT-CTACGTTAGTTATTTTTTTTGTTCCAATTTGTGTTTAGGTTCCA 1741
Query 1586 TTGTTTTAGCAAC-AGAAATTTATCATA--CACACACTCTGATATCACCA 1632
||||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct 1742 TTGTTTTAGCATTTAGAAATTAATCATATACACACACTCTGATATCACCA 1791
> AT3G61415.1 | Symbols: ASK21, SK21 | SKP1-like 21 | chr3:22722710-22726424
REVERSE LENGTH=1576
Length=1576
Score = 1077 bits (583), Expect = 0.0
Identities = 922/1083 (85%), Gaps = 33/1083 (3%)
Strand=Plus/Plus
Query 339 TCTAT-TATCAATGTCAGAAGGTGATTTGGCCGTCATGAAACCAGAGACCATGAAGTCCT 397
||||| |||||||||||||||||| ||||| |||| |||||||||| ||||| ||||
Sbjct 258 TCTATAAATCAATGTCAGAAGGTGAAATGGCCATCATTAAACCAGAGATGATGAAATCCT 317
Query 398 ACATCTGGCTTCAAACTGCTGATGGTTCAATCCAGCAAGTGGAACAAGAGGTTGCAATGT 457
| || |||||| ||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 318 ATATATGGCTTGAAACTGCTGATGGCTCAATCCAACAAGTGGAACAAGAGGTTGCAATGT 377
Query 458 TCTGTCCCATGATATGTCAAGAGGTAATACAAAAGGGTGTTGGATCTTCTAAGAATC-AT 516
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| | |
Sbjct 378 TCTGTCCCATGATATGTCAAGAAGTAATACAGAAGGGTGTTGGGTCTTCTAAGAA-CTAC 436
Query 517 GCAATATCGCTTCCACAACGAGTTAATCCAGCTATGTTCAGCTTGATTCTTGATTATTGC 576
|||||||| |||||||| ||||| |||||||| ||||| ||| ||||| ||||||| |||
Sbjct 437 GCAATATCTCTTCCACAGCGAGTCAATCCAGCCATGTTAAGCCTGATTTTTGATTACTGC 496
Query 577 AGATTTCATCAACTGCCTGGACGTTCAAATAAGGAACGAAAAACTTATGATGAAAGATTC 636
|||||||||||| | ||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 497 AGATTTCATCAAGTACCTGGACGTTCAAATAAGGAACGTAAAGTTTATGATGAAAAATTC 556
Query 637 ATCAGAATGGACACAAAAAGGCTCTGTGAGTTGACCTCAGCCGCTGATAGTTTGCAGCTG 696
||| | ||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 557 ATCCGGATGGATACAAAGAGGCTCTGTGAGTTGACCTCAGCCGCTGACAGTTTGCAGTTG 616
Query 697 AAGCCTTTGGTTGATCTTACTAGTTGCGCACTTGCAAGAATCATTGAAGGAAAAACCCCT 756
||||| |||||||||||||||||| | || |||||| |||| ||||| ||||||||||||
Sbjct 617 AAGCCGTTGGTTGATCTTACTAGTCGTGCCCTTGCACGAATTATTGAGGGAAAAACCCCT 676
Query 757 GAGGAGATACGAGAAATATTTCATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAG 816
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GAGGAGATACGCGAAATATTTCATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAG 736
Query 817 CCTCTGAAGAACACAATGGATGATCCACGGATTCGACTACTGAATAGATTATATGCaaag 876
||||| |||||||||||||||||||||||||||||| | |||||||||| |||||||||
Sbjct 737 CCTCTAAAGAACACAATGGATGATCCACGGATTCGATTGTTGAATAGATTGTATGCAAAG 796
Query 877 aaaagaaaggagctgaaagaaagagagagattgaagaatgttgaggttgaagaaCACGTG 936
|||||||| || ||||||||||||||| | | |||| ||| ||||| |||||||| ||
Sbjct 797 AAAAGAAAAGAATTGAAAGAAAGAGAGAAACTAAAGAGTGTCGAGGTCGAAGAACATGTC 856
Query 937 GACGAACGTTCTGTGGATGACCTGTTATCATTTATTAATGGCAGAGATTCCAAGGTGGTa 996
|| || ||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 857 GATGAGCGTTCAGTGGATGACCTGTTATCATTTATTAATGGCAGAGATCCCAAGGTGGTA 916
Query 997 aaga-tgtcaaagggaaaaaagaagaagaagaaaaagaaggatcagaagaTTGTTTCTTC 1055
|||| | || ||| | ||||||||||| ||||||| |||||| ||||||| || ||||||
Sbjct 917 AAGACT-TCCAAGAGCAAAAAGAAGAACAAGAAAAGGAAGGAACAGAAGAATGGTTCTTC 975
Query 1056 AAATG-A-CAT-TCA---T--G-ACAAGGAATCACATGATCTTCATTCCAAA-CAACAAT 1105
||||| | ||| | | | | | ||||| | |||| ||||| |||||||| || |||
Sbjct 976 AAATGGAACATGTGAAGCTTTGGAAAAGGATTTACATAATCTTGATTCCAAATCA-CAAA 1034
Query 1106 GTGTTGA-A--GA-GAC--TG--G-GTCCAGCATGAGAGAGGTACCCAACTTACCTAGTG 1156
||| ||| | | ||| | | |||| || || |||| || | ||||||||||||
Sbjct 1035 GTGCTGAGATTGTTGACAATACTGCGTCCTGCTTGGGAGATGTGTCTAACTTACCTAGTA 1094
Query 1157 CAGAAGATGACATTTCTACGCCAAAGGCCGGGTCTGAAGATGAAGATATAGACGATGAAA 1216
||||||||||||| |||||||||| | | || |||||||| ||||||| |||||||
Sbjct 1095 TGGAAGATGACATTTTTACGCCAAAGACTGAGTTTGAAGATGGTTATATAGATGATGAAA 1154
Query 1217 TCGATCCAGCCATGAGGGAATTGCTTGATAGAGAGGTAGAAGATTTTGCTCAAAGACTGA 1276
| |||||||| ||| |||| ||||||||||||||||||| |||||||||| ||| |||
Sbjct 1155 TTGATCCAGCTTTGAAGGAACTGCTTGATAGAGAGGTAGAGGATTTTGCTCGGAGATTGA 1214
Query 1277 ACTCCAATTGGGTTCGGTCGCTAGGACAAGAAAGA-AGGTCTGT-ACACTTCTCCATAAA 1334
|||| | |||||||| ||| ||||||||||||| || |||| | |||| ||||||||
Sbjct 1215 ACTCTAGTTGGGTTCTATCGATAGGACAAGAAAGGCAGC-CTGTGA-ACTTTTCCATAAA 1272
Query 1335 TGGCAACGGGACTACAAGACGGCAT--ACAGGTCAATCTCCATGACACGATTGGAGCTGA 1392
||||||||| ||| ||||||| || ||||||| | || || ||||| | || ||||||
Sbjct 1273 TGGCAACGGAACTTCAAGACG--ATTGACAGGTCCAGCTGCAGGACACAAGTGAAGCTGA 1330
Query 1393 AAA 1395
|||
Sbjct 1331 AAA 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5