BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483745
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46000.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1203 0.0
AT2G45990.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 268 5e-71
> AT2G46000.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Mesoderm development candidate 2 (InterPro:IPR019330); Has 31
Blast hits to 31 proteins in 13 species: Archae - 0; Bacteria
- 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr2:18921024-18922179
REVERSE LENGTH=929
Length=929
Score = 1203 bits (651), Expect = 0.0
Identities = 788/852 (92%), Gaps = 18/852 (2%)
Strand=Plus/Plus
Query 34 TGCCGTTGCA-TCTCTCTTCTTCTGTATCTGATTCCTGAATAAAGTTGTTATTCGATGGA 92
||||| |||| ||||||||| ||||| ||||||||||||||||| |||||| |||||||
Sbjct 78 TGCCGATGCAGTCTCTCTTCCTCTGTTTCTGATTCCTGAATAAATTTGTTAAACGATGGA 137
Query 93 GAAGATCGTTCGTCCTTCTTCTCTGGTTCTACTTTTTGGCCTCCTTC---TGATG-A--- 145
||||||||||||| ||||||| ||| |||||||| |||||||||||| | ||| |
Sbjct 138 GAAGATCGTTCGTTCTTCTTCGCTGATTCTACTTGTTGGCCTCCTTCTTTTTATGAATTT 197
Query 146 TCTCTAATTTCGTCCAGATCGCCGAAGCAGGGAAGCGACGGATCGAGATCTCCGATGACC 205
|| | |||| |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 198 TCACGGATTT-GTCCGGATCGCCGAAGCAACGAAGCGACGGATCGAGATCTCCGATGACC 256
Query 206 TAGACGACGTTGAAGACAATGAAGAAGACGAATTATGGAAATAGTGGGGTAAGAAAGCAA 265
||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||||||
Sbjct 257 TAGACGACGTTGAAGACAATGAAGAAGACGAGTCATGGAAAGAGTGGGGGAAGAAAGCAA 316
Query 266 CCACCCCGGAATTTGATCCGCCTCCGGATTTTACCAATATGGGATTCGATCAGATCCAGG 325
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 317 CGACCCCGGAATTTGATCCGCCTCCGGATTTCACCAATATGGGATTCGATCAGATCCAAG 376
Query 326 AGGAAATGGCTAAACGGACTTTTGGAACGGTCGTCGGTTTCGTGAAGCTCCGGTTAGGCG 385
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 377 AGGAAATGGCTAAACGGACTTTTGGAACCGTCGTCGGTTTCGTCAAGCTCCGGTTAGGCG 436
Query 386 TCCCCCGTACCAAGGATATGGTGATTGATATTGCTATGAAATGGACAAAAGTTTTGAGAA 445
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 437 TCCCCCGTACCAAGGATGTGGTGATTGATATTGCTATGAAATGGACAAAAGTTTTAAGAA 496
Query 446 CAGGAGGGATAGAAGTAAGATTCATGGCTGTAGATCGAAGCACGGTCATGTTCAATATGC 505
|||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 497 CAGGAGGGATAGGAGTAAGATTCATGGCTGTAGATCGAAGCACAGTGATGTTCAATATGC 556
Query 506 AAAATGGGAAGCTAGTGACTGAGCTAAGGGAGTTCGTGCTGAGCCAAGAAGAAGCTTACG 565
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 557 AAAATGGGAAGCTTGTGACTGAGCTAAGGGAATTCGTGCTGAGCCAAGAAGAAGCTTACG 616
Query 566 AGGTTAAGATAGGGAAGCAAGAGTTTAGAAGACCTGGAGACCCTCCATTTGAAGATGTCT 625
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 617 AGGTCAAGATAGGGAAGCAAGAGTTTAGAAGACCTGGAGATCCTCCATTTGAAGATGTCT 676
Query 626 TTGACAAACTTCAAGCTGAGCAAAGGAAAGATCACGAAGATGGTGATAGTAACAAGAATG 685
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 677 TTGACAAATTTCAAGCTGAGCAAAGGAAAGATCACGAAGATGGTGATGGTAACAAGAATG 736
Query 686 ATCTTACCAAGGATGAATTATAGGTCACAGAAAAGCTTTTATATTCGGGTAGTACTGAAG 745
||||||| |||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 737 ATCTTACTAAGGATGAATTATAGGTCACAGAAAAGCTTCTATAAT-GGGTAGTACTGAAA 795
Query 746 GTTCAACTCTTTTA--GAATCTTACCTAAACATGTTTGTTTTTTAATTTCCGTTGAATGC 803
|||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 796 GTTCAACTCTTTTACTGAATCTTACCTAAACATGTTTGGTTTTTAGTTTCCGTTGAATGC 855
Query 804 CGTAGAATACAATAAATAGGAAAGCttt-ttt-tt--CCGATCAGTAT--GCACTCATTT 857
|||||||||||||||| ||||||||||| ||| || || || ||||| ||||||||||
Sbjct 856 CGTAGAATACAATAAAGAGGAAAGCTTTGTTTCTTTTCCAATGAGTATATGCACTCATTT 915
Query 858 AAGCTTATTGCT 869
||||||||||||
Sbjct 916 AAGCTTATTGCT 927
> AT2G45990.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 312 Blast hits to 312 proteins in 90 species: Archae -
0; Bacteria - 131; Metazoa - 0; Fungi - 0; Plants - 67; Viruses
- 0; Other Eukaryotes - 114 (source: NCBI BLink). | chr2:18919316-18921229
FORWARD LENGTH=1079
Length=1079
Score = 268 bits (145), Expect = 5e-71
Identities = 186/204 (91%), Gaps = 9/204 (4%)
Strand=Plus/Minus
Query 674 GTAACAAGAATGATCTTACCAAGGATGAATTATAGGTCACAGAAAAGCTTTTATATTCGG 733
||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | ||
Sbjct 1078 GTAACAAGAATGATCTTACTAAGGATGAATTATAGGTCACAGAAAAGCTTCTATAAT-GG 1020
Query 734 GTAGTACTGAAGGTTCAACTCTTTTA--GAATCTTACCTAAACATGTTTGTTTTTTAATT 791
||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||
Sbjct 1019 GTAGTACTGAAAGTTCAACTCTTTTACTGAATCTTACCTAAACATGTTTGGTTTTTAGTT 960
Query 792 TCCGTTGAATGCCGTAGAATACAATAAATAGGAAAGCttt-ttt-tt--CCGATCAGTAT 847
|||||||||||||||||||||||||||| ||||||||||| ||| || || || |||||
Sbjct 959 TCCGTTGAATGCCGTAGAATACAATAAAGAGGAAAGCTTTGTTTCTTTTCCAATGAGTAT 900
Query 848 --GCACTCATTTAAGCTTATTGCT 869
||||||||||||||||||||||
Sbjct 899 ATGCACTCATTTAAGCTTATTGCT 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42397620068
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5