BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483748
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46030.1 | Symbols: UBC6 | ubiquitin-conjugating enzyme 6 | ... 1186 0.0
AT5G41340.1 | Symbols: UBC4, ATUBC4 | ubiquitin conjugating enz... 315 6e-85
> AT2G46030.1 | Symbols: UBC6 | ubiquitin-conjugating enzyme 6
| chr2:18932019-18933507 REVERSE LENGTH=862
Length=862
Score = 1186 bits (642), Expect = 0.0
Identities = 786/850 (92%), Gaps = 31/850 (4%)
Strand=Plus/Plus
Query 4 tctctctctctctctctAAAACCAGATTC-T--T----G-A-TAGAAGAAGAAGAGGAAC 54
||||||||||||||||||||||||||||| | | | | ||||||||||||||||
Sbjct 14 TCTCTCTCTCTCTCTCTAAAACCAGATTCTTAATAGAAGAAGAAGAAGAAGAAGAGGAAA 73
Query 55 GGAG-AATCTGCCATGGCTTCGCCGAGCAAACGTCGAGAGATGGATATGATGAAATTGAT 113
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 74 GGAGAAATCTGCCATGGCGTCGCCGAGCAAACGTCGAGAGATGGATATGATGAAACTGAT 133
Query 114 GATGAGTGATTACAAGGTGGATACAATCAACGACGATTTGCAAATGTTCTATGTCACATT 173
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 134 GATGAGTGATTACAAGGTGGATACTGTCAACGACGATTTGCAAATGTTCTATGTCACATT 193
Query 174 CCATGGACCCACTGACAGCCTTTATCAGGGAGGTGTATGGAAGATTAAAGTCGAACTTCC 233
|||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 194 CCATGGACCCACTGACAGTCTTTATCAGGGGGGTGTATGGAAGATAAAAGTGGAACTTCC 253
Query 234 CGAAGCTTATCCATACAAATCTCCATCTGTAGGATTTGTTAACAAGATTTATCACCCTAA 293
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 254 CGAAGCTTATCCATACAAATCTCCATCTGTTGGATTTGTCAACAAGATTTATCACCCTAA 313
Query 294 TGTCGATGAATCTTCTGGTGCAGTTTGCTTAGATGTTATAAACCAGACATGGAGCCCAAT 353
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 314 TGTCGATGAATCTTCTGGTGCTGTTTGCTTAGATGTTATAAACCAGACTTGGAGCCCAAT 373
Query 354 GTTTGATCTTATAAATGTTTTCGAATCCTTCCTTCCGCAACTGCTTCTGTATCCAAACCC 413
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 374 GTTTGATCTTATAAATGTGTTCGAATCCTTCCTTCCGCAACTGCTTCTATATCCAAACCC 433
Query 414 ATCAGATCCATTTAATGGAGAAGCTGCTTCTCTGTTGATGCGAGACCGCGCAGCCTATGA 473
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 434 ATCAGATCCATTTAATGGAGAAGCCGCTTCTCTGTTGATGCGAGACCGTGCAGCCTATGA 493
Query 474 GCTGAAAGTGAAAGAATATTGTGAGAAATATGCAAAACCCGAGAAGGAGAATTTAAGtga 533
||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 494 GCTCAAAGTGAAAGAATATTGTGAGAAATATGCAAAACC--AGA-GGAGATTTTAAGTGA 550
Query 534 tgatgatgacgatgacgacgatgatagcatgagcgaagatggctcggactctgatgatga 593
||||||||| ||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 551 TGATGATGA---TGA------TGATAGCATGAGCGAAGATGGTTCGGACTCTGATGATGA 601
Query 594 tgacgatga--AA-TCGTTGGAAAAGCCGATCCATGACTGTT-ACAAATCAATCTTTCTT 649
|||||| || || ||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 602 TGACGACGACGAAATCGTTGGGAAAGCCGATCCATGACTGTTTACAAATCAATCTTTCTT 661
Query 650 TGCACTTTCATTAGTCCATCTTCAAATTTAAACCATTAATGCTCATTGCAAAGAGGAGAG 709
||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 662 TGCACTTTCATTACTCCATCTTCAACTTTAAACCAGTAATGCTCATTGCAAAGAGGAGAG 721
Query 710 AAACTTTCCTCTGTAAATTTGTAAAGACTTGAT-ATTCTTTAGGACTATTGAAATTTCTT 768
|| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 722 AAGCTTTCCTCTGTAAATTTGTAAAGACTT-ATCATTCTTTAGGACTATTGAAATCTCTT 780
Query 769 TTTA--AAACAGTAGATAAAATGTAACAATTTGCAATCTCACATTAATGGAAACATGAAT 826
||| |||||||||||||||||||||||||||| |||||||| |||| |||||| |||
Sbjct 781 TTTTTTAAACAGTAGATAAAATGTAACAATTTGCCATCTCACACCAATG-AAACATTAAT 839
Query 827 CCATATCTCA 836
||||||||||
Sbjct 840 CCATATCTCA 849
> AT5G41340.1 | Symbols: UBC4, ATUBC4 | ubiquitin conjugating enzyme
4 | chr5:16538081-16540130 REVERSE LENGTH=953
Length=953
Score = 315 bits (170), Expect = 6e-85
Identities = 365/456 (80%), Gaps = 26/456 (6%)
Strand=Plus/Plus
Query 67 ATGGCTTCGCCGAGCAAACGTC-GAGAGATGGATATGATGAAATTGATGATGAGTGATTA 125
||| ||||||| |||||||| | |||| |||||||||||||| |||||||||| |||||
Sbjct 175 ATGTCTTCGCCAAGCAAACG-CAGAGAAATGGATATGATGAAGCTGATGATGAGCGATTA 233
Query 126 CAAGGTGGATACAATCAACGACGATTTGCAA-ATGTTCTATG-TCACATTCCATGGACCC 183
|| ||||| || |||||||| | ||||| | ||||||| | | |||| |||| |||
Sbjct 234 TAAAGTGGAAACGATCAACGATGGCATGCAAGA-ATTCTATGTTGA-ATTCAATGGTCCC 291
Query 184 ACTGACAGCCTTTATCAGGGAGGTGTATGGAAGATTAA-AGTCGAACTTCCCGAAGCTTA 242
| ||||| || ||||| |||||||| ||||||| ||| ||| || ||||| || |||||
Sbjct 292 AAAGACAGTCTCTATCAAGGAGGTGTGTGGAAGA-TAAGAGTTGAGCTTCCAGATGCTTA 350
Query 243 TCCATACAAATCTCCATCTGTAGGATTT-GTTAAC-AAGATTTATCACCCTAATGTCGAT 300
||| || |||||||||||||| || ||| || || || |||||||| |||||||| |||
Sbjct 351 TCCTTATAAATCTCCATCTGTTGG-TTTCATT-ACTAAAATTTATCATCCTAATGTTGAT 408
Query 301 GAATCT-TCTGGTGCAGTTTGCTTAGATGTTATAAACCAGACATGGAGCCCAATGTTTGA 359
||| || || ||| | ||||| |||||||| || ||||| || ||||| || ||||| ||
Sbjct 409 GAA-CTGTCGGGTTCTGTTTGTTTAGATGTGATTAACCAAACTTGGAGTCCTATGTTCGA 467
Query 360 TCTTATAAATGT-TTTCGA-ATCCTTCCTTCCGCAACTGCTTCTGTATCCAAACCCATCA 417
||| | ||||| ||| || | | || ||||| || || |||||||||||||||||||||
Sbjct 468 CCTTGTGAATGTGTTT-GAGA-CATTTCTTCCTCAGCTTCTTCTGTATCCAAACCCATCA 525
Query 418 GATCCATTTAATGGAGAAGCTGCTTC-TCTGTTGATGCGAGACCG-CGCAGCCTATGAGC 475
|||||||| ||||||||||||||| | | | ||||||| || || | | || |||||||
Sbjct 526 GATCCATTGAATGGAGAAGCTGCTGCGT-TAATGATGCGTGATCGTC-CTGCTTATGAGC 583
Query 476 TGAA--AGTGAAAGAATATTGTGAGAAATATGCAAA 509
|| ||| |||||||| |||||||| ||||||||
Sbjct 584 --AACGAGTTAAAGAATACTGTGAGAAGTATGCAAA 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40739893217
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5