BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483750
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46050.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2671 0.0
> AT2G46050.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:18939262-18941034 FORWARD LENGTH=1773
Length=1773
Score = 2671 bits (1446), Expect = 0.0
Identities = 1652/1753 (94%), Gaps = 8/1753 (0%)
Strand=Plus/Plus
Query 7 TTTACATTCCTCCGATCAACTCCGATCTTCCTT-CAGAACCATCAGAACCACTTATCTTC 65
|||||||||||||||||||||| |||||||||| | ||||||||||||||||||||| ||
Sbjct 7 TTTACATTCCTCCGATCAACTCGGATCTTCCTTGC-GAACCATCAGAACCACTTATCATC 65
Query 66 CTTGCGAACCATTAGAACCcttccttcttcttcttcttcACCTGTAGCTATATCCTCTGT 125
||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 66 CTTGCAAAACATTAGAACCATTCCTTCTTCTTCTTCTTCACCTGTAGCTATATCCTCTGT 125
Query 126 ATCGAAGTTATCTGCTAGCTTGGATCATCTCTTTGACGTGAAACAAAAACATGGGTTCAT 185
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||
Sbjct 126 ATCGAAGTTATCTGCTAGCTTGGATCATCTCTCTGACGTGAAACAAGAACATGGTTTCAT 185
Query 186 GGTAAAACAAGGGACTTACAATTCTCTGTTTTTTCAAAACAAGCTCTTGCAAGCTTACAC 245
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 186 GGTAAAACAAGGGATTTACAATTCTCTGTTTCTTCAAAACAAGCTCTTGCAAGCTTACAC 245
Query 246 GAAAATCAGAGAATTTGATGATGCAGATAAGCTCTTCGACGAAATG-CTTGTGAGAAATA 304
||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 246 GAAAATCAGAGAATTCGATGATGCAGATAAGCTCTTCGACGAAATGCCTT-TGAGAAATA 304
Query 305 TTGTTACTTGGAACATACTGATTCACGGGGTCATTCACCGAGACGGTGACACCAACCACA 364
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 305 TTGTTACTTGGAACATACTGATTCACGGGGTCATTCAACGAGACGGTGACACCAACCACA 364
Query 365 GAGCTCATCTAGGTTTTTGTTATTTGAGCCGGAGTCTTCTT-AGTGAGGTGATTTTGGAT 423
|||||||||||||||||||||||||||| |||| |||| || | ||| |||| |||||||
Sbjct 365 GAGCTCATCTAGGTTTTTGTTATTTGAGTCGGATTCTT-TTCACTGATGTGAGTTTGGAT 423
Query 424 CATGTGTCGTTCATCGGGTTGATACGGTTGTGTACTGATTCGACCAATGTGGAAGCTGGT 483
|||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 424 CATGTGTCGTTCATGGGGTTGATACGGTTGTGTACTGATTCGACCAATATGAAAGCTGGT 483
Query 484 AACCAATTACACAGTCTGATAGTGAAACAAGGTCTTGAATCGAATTGCTTTCTGAGTACT 543
| |||||||||| ||||||| |||||||||||||||||||||| |||||||| |||||||
Sbjct 484 ATCCAATTACACTGTCTGATGGTGAAACAAGGTCTTGAATCGAGTTGCTTTCCGAGTACT 543
Query 544 AGTCTAGTTGATTTCTATGGGAAATGTGGTCTCATTGGT-GAAGCAAGACAAGTTTTCGA 602
||||||||| |||||||||||||||||||||||||| || |||||||||| |||||| ||
Sbjct 544 AGTCTAGTTCATTTCTATGGGAAATGTGGTCTCATT-GTAGAAGCAAGACGAGTTTTTGA 602
Query 603 GGCGGTTTTGGTTAGAGATTTAGTGCTGTGGAACGCTTTAGTTTCGTCGTATGTTCTTAA 662
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 603 GGCGGTTTTGGATAGAGATTTAGTGCTATGGAACGCTTTAGTTTCGTCGTATGTTCTTAA 662
Query 663 CGGTATGATTGATGAAGCTTTTGGTTTACTCAAGCTGATGAGTTCTGaaaaaaaCGGATT 722
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct 663 CGGTATGATTGATGAAGCTTTTGGTTTACTCAAGCTGATGGGTTCTGACAAAAACAGATT 722
Query 723 CACGGGTGATAATTTCACTCTCTCGAGTCTTCTCAGTGCATGCGGGATCAAACAAGGGAA 782
|| ||||||| |||| ||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 723 CAGGGGTGATTATTTTACTTTCTCGAGTCTTCTCAGTGCATGCAGGATCGAACAAGGGAA 782
Query 783 GCAGATTCATGCCATTGTCTTCAAACTGTCATATTTATTCGACATTCCTGTGGCGACTGC 842
||||||||| |||||| |||||||| |||||||| |||||||||||| |||||||||||
Sbjct 783 GCAGATTCACGCCATTCTCTTCAAAGTGTCATATCAATTCGACATTCCGGTGGCGACTGC 842
Query 843 ATTGGTGAATATGTATGCGAAGAGTAACCATATGAGTGATGCTCACAAATGTTTTGAATC 902
|||| ||||||||||||| |||||||||||| |||||||||||| | |||||||||||
Sbjct 843 ATTGCTGAATATGTATGCTAAGAGTAACCATTTGAGTGATGCTCGGGAGTGTTTTGAATC 902
Query 903 GATGGTTGTGAGAAATATAGTGTCTTGGAACGCGATGATTGTAGGTTTTGGACAAAATGG 962
|||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 903 GATGGTTGTGAGAAATGTAGTGTCTTGGAATGCGATGATTGTAGGTTTTGCACAAAATGG 962
Query 963 AGAAGGAAGAGAAGCTATGCGACTTTTTGGTCAAATGCTCCGTGAAAATCTTCAACCTGA 1022
||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 963 AGAAGGAAGAGAAGCTATGAGACTTTTTGGTCAAATGCTCCTTGAGAATCTTCAACCAGA 1022
Query 1023 TGAACTTACCTTTGCAAGTGTTCTATGTTCCTGCACGAAATTCTCTGCAATTTGGGAGAT 1082
||| ||||||||||||||||||||| |||||||| | ||||| |||||||||||||||||
Sbjct 1023 TGAGCTTACCTTTGCAAGTGTTCTAAGTTCCTGCGCCAAATTTTCTGCAATTTGGGAGAT 1082
Query 1083 TAAGCAAGTGCAAGCGATGGTTACTAAAAAGGGCTCTGCAGAATTTTTGTCGGTGGCTAA 1142
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1083 TAAGCAAGTGCAAGCGATGGTTACTAAAAAGGGCTCAGCAGATTTTTTGTCGGTCGCTAA 1142
Query 1143 TTCTCTGATAAGTTCTTACTCCAGGACTGGAAATTTATCTGAAGCACTTTTATGTTTTCA 1202
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1143 TTCTCTGATAAGTTCCTACTCCAGGAATGGAAATTTATCTGAAGCACTTTTATGTTTTCA 1202
Query 1203 TTCGATCCGAGAACCTGATCTTGTTTCATGGACTTCAGTGATAGGAGCTCTGGCTTCTCA 1262
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1203 TTCGATCCGAGAACCTGATCTTGTTTCATGGACTTCAGTGATAGGAGCTTTGGCTTCTCA 1262
Query 1263 TGGATTCGCAGAAGAAAGCTTGCGAATATTTGAAAGTATGCTGCAGAAACTTCAACCAGA 1322
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1263 TGGATTCGCAGAAGAAAGCTTGCAAATGTTTGAAAGTATGCTGCAGAAACTTCAACCAGA 1322
Query 1323 CAAGATCACTTTTTTAGAGGTTTTGTCTGCTTGTAGCCATGGAGGATTAGTTCAAGAAGG 1382
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1323 CAAGATCACTTTTTTAGAGGTTCTGTCTGCTTGTAGCCATGGAGGATTAGTTCAAGAAGG 1382
Query 1383 GCTTCGTTGCTTCAAACGAATGACTGAGGTTTACAAGATAGAACCAGAGGAAGAACACTA 1442
||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 1383 GCTCCGTTGCTTCAAACGAATGACTGAGTTTTACAAGATAGAAGCAGAGGATGAACACTA 1442
Query 1443 CACTTGTCTGATCGATCTTCTTGGTCGAGCTGGTTTCATCGACGAGGCTTTTGATGTGTT 1502
||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 1443 CACGTGTCTGATCGATCTTCTTGGTCGAGCAGGTTTCATCGACGAGGCTTCTGATGTTTT 1502
Query 1503 AAAGTCAATGCCCACAGAACCAAGCACACATGCTTTGGCAGCTTTCACAGGAGCATGTAA 1562
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1503 AAATTCAATGCCCACAGAACCAAGCACACATGCTTTGGCAGCTTTCACAGGAGGATGTAA 1562
Query 1563 CGTCCATGAGAAAATAGAATCCATGAAATGGGGTGCAAAGAAGCTTCTTGAAATTGAACC 1622
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 CATCCATGAGAAAAGAGAATCCATGAAATGGGGTGCAAAGAAGCTTCTTGAAATTGAACC 1622
Query 1623 AAGCAAACCTGTGAACTACTCCATCATGTCAAACGCTTACGCCTCCGAAGGCCATTGGAA 1682
| |||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||
Sbjct 1623 TACCAAACCTGTGAACTACTCCATCCTGTCAAACGCTTATGTCTCTGAAGGCCATTGGAA 1682
Query 1683 TCAAGCGGCTCTACTGCGTAAAAAAGAGAGGAGAAACTGCTACAATCCCAAAACTCTAGG 1742
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1683 TCAAGCGGCTCTACTGCGTAAAAGAGAGAGGAGAAACTGCTACAATCCCAAAACTCCAGG 1742
Query 1743 TTGCAGTTGGCTA 1755
|||||||||||||
Sbjct 1743 TTGCAGTTGGCTA 1755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86947343940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5