BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483751
Length=2727
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46060.1 | Symbols: | transmembrane protein-related | chr2:... 4385 0.0
> AT2G46060.1 | Symbols: | transmembrane protein-related | chr2:18941099-18945099
REVERSE LENGTH=2779
Length=2779
Score = 4385 bits (2374), Expect = 0.0
Identities = 2610/2726 (96%), Gaps = 7/2726 (0%)
Strand=Plus/Plus
Query 3 AGTCTAAAACCCTTAATTCTCAGAAAAAGTTTCACCTACAATGGCTGAGATTTCGTTTCT 62
|||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||
Sbjct 60 AGTCTAAAACCCTTAATTCTCAGAGAAAGTTTCACCTACAATGGCAGAGATTTTGTTTCT 119
Query 63 GGTTTTAACAACTCTCGTCGTTTTTTCATGGGCTCTTTCGATCTGTAATTGTCTTCAAGA 122
| |||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 120 GCTTTTAAGAACTCTCGTCGTGTTTTCATGTGCTCTTTCGATCTGTAATTGTCTTCAAGA 179
Query 123 TTCTGGGTTGGACAATTATGGAAGCTTTTTCACGGTCTCGAGCTTCAGGTACCCTGAATC 182
| || | ||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 TGCT--G-CGGACAATAATGGAAACTTTTTCACGGTCTCGAGCTTCAGGTACCCTGAATC 236
Query 183 CCAAGTCAGACCCTACGATACACGTTACATCAGAGTTGATTTGCCTCCATGGTTCTCATC 242
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGAAGTCAGACCCTACGATACACGTTACATCAGAGTTGATTTGCCTCCATGGTTCTCATC 296
Query 243 ATTGAATGTTGCTATCGAATCTGATGTAGACATCACTGCAAAGAGCATTTCGAAGATTTC 302
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATTGAATGTTGCTATTGAATCTGATGTAGACATCACTGCAAAGAGCATTTCGAAGATTTC 356
Query 303 GAAAAGTCTTCTTCCTGTTATTTGCTTTAGAGATGGTAGTCCTCCTCTGCCTGATGCCTC 362
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 357 CAAAAGTCTTCTTCCTGTTATATGCTTTCGAGATGGTAGTCCTCCTCTGCCTGATGCCTC 416
Query 363 AACCAACGCTCTTGAAGGTTTAGAGCTAGGACAATTCTTCAATGGATCTTTCCAAGGAGC 422
||||||||||||| |||| ||||||||||||| ||||| ||||||||||| || ||||
Sbjct 417 AACCAACGCTCTTCAAGGATTAGAGCTAGGACGGTTCTTTAATGGATCTTTTGAAAGAGC 476
Query 423 TGAAGATATTGAGATTGCAGAACAGTGTTACCCTATGCAGAAGAACATATCCCTGAGATT 482
| |||||| |||||||||| ||||||||||||||||||||||||| ||| || |||||||
Sbjct 477 TCAAGATAGTGAGATTGCACAACAGTGTTACCCTATGCAGAAGAATATAACCTTGAGATT 536
Query 483 GACCAATGAACAGATATCACCGGGAGCTTGGTATATTGGTCTTTTTAACGGAATTGGGGC 542
|||||||||||||||||| || |||||||||||| ||||||| |||||||||||||||||
Sbjct 537 GACCAATGAACAGATATCTCCTGGAGCTTGGTATGTTGGTCTCTTTAACGGAATTGGGGC 596
Query 543 TACGAGGACTCAGGGGAAAATGATTGTTCGCTCCTCTGCCTTTTCATTTAGTGCCAACAT 602
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 597 GACTAGGACTCAGGGGAAAATGATTGTTCGCTCCTCTGCGTTTTCATTTAGTGCCAACAT 656
Query 603 TAGTGTTGAAGGTTGTAAAACCGCTACAATGTGGGGGCCTTCCTGCAACCAGACTATTTA 662
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 657 TAGTGTTGAAGGTTGTAAAACCGCTACAATGTGGGGGCCTTTCTGCAACCAGACTATTTA 716
Query 663 TCCGCTTTCATGTTCTCGGTTTGATAACCAGACAGGAAGTGTTATTTCTTGCTCTGATTC 722
||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct 717 TCCGCTTTCATGTTCTCGGTTCGATAACCAGACAGCAAGTGTTATTTCTTGCGCTGATTC 776
Query 723 TATTCCTAGTTCTTGTCTGACCCATGCTGAAACAAAGACATATGCTTTAGATGTAGATGG 782
| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 777 TTTTCCTAGTTCTTGTCTGACTGGTGCTGAAACGAAGACATATGCTTTAGATGTAGATGG 836
Query 783 GATAGCTGAACAATTAGTTATTATGGCATCCAATGTCAAAGTAGATTCCAATGAAAGTTA 842
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AATAGCTGAACAGTTAGTTATTATGGCATCCAATGTCAAAGTAGATTCCAATGAAAGTTA 896
Query 843 TCTCATGTGTTACGCCCGTTTTGGAGCCATTGCTTCAGAGACTCTGCATGATTACGCTGG 902
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 897 TCTCATGTGTTACGCCCGTTTTGAAGCCTTTGCTTCAGAGACTCTGCATGATTACGCTGC 956
Query 903 TGATATACATAAAGTTCCCTTAGTTGTTAACAAACCGAAAGCTGGTCGATGGTATATCGT 962
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 957 TGATATACATAAAGTTCCCTTAATTGTTAACAAACCGAAAGCTGGTCGATGGTATATAGT 1016
Query 963 TATTAGTTTATCTGGACGGGAG-ACTCGGTTTGTACAGGGCACAAATTCTGGTTCTAGGG 1021
|||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||||
Sbjct 1017 TATTAGTTTATCTGGACGGGAGAAC-CGGTTTGCACAGGGCACAAATTCCAGTTCTAGGG 1075
Query 1022 TCTGCTTTTCAATTAATGTTAAAGTACTCGGATGTCCCATAGGAAAAGCAGGACCAAATT 1081
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1076 TCTGCTTTTCCATTAATGTTAAAGTACTCGGATGTCCTGTAGGAAAAGCAGGACCAAATT 1135
Query 1082 GTGGGCAGCAAATCTACATGCTTCAGGCAGTTATGAGGAGGGGATGGTTGACACCTTTTG 1141
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1136 GTGGGCAGCAAATCTACATTCTTCAGGCAGTTATGAGGAGAGGATGGTTGACACCTTTTC 1195
Query 1142 AATCATATTATTTTCCGGTCAATGACGCTTCACCTTCAGGCTCGAGCACAGTTTTCTCCC 1201
||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||
Sbjct 1196 AATCATATTATTTTCCGGTCAATGACGCTTCACTTTCAGGCTCGAGCACAAATTTCCCCC 1255
Query 1202 TCGAGCCCATCGTCAGCAACTTTTCCTCTATTCCAGAATTAGACACAAGCACATGGACTT 1261
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TCGAACCCATCGTCAGCAACTTTTCCTCTATTCCAGAATTAGACACAAGCACATGGACTT 1315
Query 1262 ATTTTCTCATGAACATCCCTCAAGGAGGTTCTGGTGGGCATATCCATTTCAGATTAACAT 1321
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||
Sbjct 1316 ATTTTCTCATGAACATCCCTCAAGGTGGTTCTGGTGGACATATCCATTTCAGATTATTAT 1375
Query 1322 CAGATTCCACAATGCAATATGAAGTATATCTTAGAATTGGTGGATTGCCCACTATTGACG 1381
||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1376 CAGATTCCACAATACAGTATGAAGTATATCTTAGATTTGGTGGATTGCCCACTATTGACG 1435
Query 1382 ACCGGGATTATTATTATGTAAATCGAACAAGTGCCAGCCGCTCAATGTTCTTCTCATTGT 1441
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 ACCGGGATTACTATTATGTAAATCGAACAAGTGCCAGCCGCTCAATGTTCTTCTCATTGT 1495
Query 1442 ATAATTCTAGCCAAGAAAAGGTTGATTTCTACATCTTGTATGCTCGAGAAGGAACATGGT 1501
||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1496 ATAATTCTAGCAAAGAAATGGTTGATTTCTACATCTTGTATGCTCGAGAAGGAACCTGGT 1555
Query 1502 CATTTGGTTTAAGGCAGCTCATTGACTCTAATACTCCTGCTGCTTCCAGAGGTCCACCTA 1561
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1556 CATTTGGGTTAAGGCAGCTCATTGACTCTAATACTCCTGCTGCTTCCAGAGGTTCACCTA 1615
Query 1562 CTCTAGTATCTCTTTCTCTCGAAAGATGCCCGAGAAGGTGTTCGTCTTATGGGCAATGCC 1621
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1616 CTTTAGTATCTCTTTCTCTCGAAAGATGCCCGAGAGGGTGTTCGTCTTATGGGCAATGCC 1675
Query 1622 GATATGCTTTTGACGCTAGTGGATTGACATCTTACAGCTTTTGTTCTTGTGACAGAACCC 1681
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 GATATGCTTTTGACGCTAATGGATTGACATCTTACAGCTTTTGTTCTTGTGACAGAACCC 1735
Query 1682 ACGGAGGCTTTGACTGCAGCATTGAAATTGTGTCACACCAAGAACATATTGTTCAGTCTA 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 ACGGAGGCTTTGACTGCAGCATTGAAATTGTGTCACACCAAGAACATATTGTTCAGTCTA 1795
Query 1742 TTGCTCTCATTGCATCAAATGCAGCGGCTCTTTTGCCAGCTTACTGGGCTCTTCGGCAGC 1801
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 TTGCTCTCATCGCATCAAATGCAGCGGCTCTTTTGCCAGCTTACTGGGCTCTTCGGCAGC 1855
Query 1802 GGGAGTATCCAGAGTGGGTTCTGTTCACATCCAGCGGAATCTCGAGCGCTCTGTATCATG 1861
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1856 GGGAGTATCCAGAGTGGGTTCTGTTTACATCCAGCGGAATCTCGAGCGCTCTGTATCATG 1915
Query 1862 CATGTGATGTAGGCACCTGGTGTGTTTTAAGTTACAACGTTTTACAGTTCATGGATTTCT 1921
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1916 CATGTGATGTAGGCACCTGGTGTGTTTTAAGTTACAATGTTTTACAGTTCATGGATTTCT 1975
Query 1922 GGCTCTCTTTCATGGCGGTGGTTGGTACCTTTGTGTACTTATCCACGGCTGGTGAAGCAG 1981
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1976 GGCTCTCTTTCATGGCCGTGGTTGGTACATTTGTGTACTTATCCACGGCTGGTGAAGCAG 2035
Query 1982 TTAAGAGGACAATACACACAGTTGTTGCCATTCTCACAGCTTTATTGGCCTTGACTCAAG 2041
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 TTAAAAGGACAATACACACAGTTGTTGCCATTCTCACAGCTTTATTGGCCTTGACTCAAG 2095
Query 2042 CAACAAGGGCGTCAAATATTATCATTGTGTTAGCAATCGGTTCACTAGGTCTCCTCATCG 2101
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2096 CAACAAGGGCGTCAAATATTATCATTGTGTTAGCAATCGGTTCACTCGGTCTCCTCATCG 2155
Query 2102 GATTTTTGGTAGAATTTGTTACCAAGTATCGATCATACTGCGGGTCGGCTGGATTTTCAT 2161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 GATTTTTGGTAGAATTTGTTACCAAGTATCGATCATACTGCGGGTCGGCTGGATTTTCAT 2215
Query 2162 TGAACATGCTCGACAGGCCACGGGCAGTCAAAGAATGGTTTAGTAATTTGATCAAGACGC 2221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 TGAACATGCTCGACAGGCCACGGGCAGTCAAAGAATGGTTTAGTAATTTGATCAAGACGC 2275
Query 2222 TCAAGAAACGGTTTCGTTGGGGCTTTGTGGCGGCTGGTCTTGTAGCCTTCACCATGGCAG 2281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 TCAAGAAACGGTTTCGTTGGGGCTTTGTGGCGGCTGGTCTTGTAGCCTTCACCATGGCAG 2335
Query 2282 CCATAAGTTTCAAAGTAGAAACCAGTTCGAGCTACTGGATTTGGCACAGTATTTGGCATT 2341
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2336 CCATAAGTTTCAAAGTAGAAACCAGTTCGAGCTACTGGATGTGGCACAGTATTTGGCATT 2395
Query 2342 TCACAATCTACACATCTTCCTTCTTCTTCCTCTGTTCGAAGATTGCAATTGTAAATAACG 2401
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 2396 TCACAATCTACACATCTTCTTTCTTCTTCCTCTGTTCGAAGATTGCAATTGTAAATCACG 2455
Query 2402 AGAACCTAGCCCACCACGGAGCTGACAACTACGAGTTAACAAGGCAAGACTCGCTACCAA 2461
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2456 AGAACCTAGCCCACAACGGAGCTGACAACTACGAGTTAACAAGGCAAGACTCGCTATCAA 2515
Query 2462 GAAACTAAGAAAAGCATAAAGAGAGAGGCTTTTACTGATTCTTTCTGTATCTTGTAACAA 2521
|||||||||| |||||||||||||| | |||| ||||||| ||| |||||||||||||||
Sbjct 2516 GAAACTAAGATAAGCATAAAGAGAG-GCCTTT-ACTGATTTTTTTTGTATCTTGTAACAA 2573
Query 2522 GACATGGTGATGGGTAAATATTCTCTCTCTTACTTAGATTGTTTCGATATGGAATCTGAA 2581
||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||
Sbjct 2574 GACATGGTGATGGGTAAATATTCTCTCCCTTACTTAGATTCTTTCGATATAGAATCTGAA 2633
Query 2582 CCTCACTGTCAACTTGTGTCTGTAATCATGTATGTTTATACGCTCATAGTGACATAAAAA 2641
||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||||| ||||
Sbjct 2634 CCTCACTTTCAACTTGTATCTGTAATCTTGTATGTTTATACACTCATAGTGACATGAAAA 2693
Query 2642 GATCACTGGAGTTGTCCAGTTGCATCATTTATCTTAGGCCTAGGCAATGTAATGTTTTGG 2701
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2694 GATCACTGGAGTTGTCCAGTTGCATCATTTATCTTAGGCCTAGGCTATGTAATGTTTTGG 2753
Query 2702 TACAATGAGAGGCTTTGGCGTTCTTG 2727
||||||| ||||||||||||||||||
Sbjct 2754 TACAATGGGAGGCTTTGGCGTTCTTG 2779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135450746100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5