BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483755
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46090.1 | Symbols: | Diacylglycerol kinase family protein ... 2115 0.0
> AT2G46090.1 | Symbols: | Diacylglycerol kinase family protein
| chr2:18950856-18953275 FORWARD LENGTH=1354
Length=1354
Score = 2115 bits (1145), Expect = 0.0
Identities = 1284/1350 (95%), Gaps = 14/1350 (1%)
Strand=Plus/Plus
Query 1 AAGTGTCTAATCGCGCGATGAACTTGATAACGGCGATGATGTCTCCCGGAGCCGAATTGC 60
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1 AAGTGTCTAATCGCGCGATGAACTTGATAACGGCGATGA------CCGGAGCTAAATTGC 54
Query 61 GGCCATACAATGCTACGATCCACTTGCTGCATTCCACTTTGCCCTTTCACGGCGAAACAA 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 55 GGCCATACAATGCTACGATCCACTTGCTGCACTCCACTTTGCCCTTTCACGGCGAAACAA 114
Query 121 CCTTCGTTCCCTAGGAAACAGCAACGTATAACCTCTGATCACTTCACCCTTCGCGGTGGT 180
||||| |||| |||||||||||||||||| |||||||||| ||||||| |||||||||||
Sbjct 115 CCTTCTTTCCTTAGGAAACAGCAACGTATTACCTCTGATCGCTTCACCTTTCGCGGTGGT 174
Query 181 GGTGGTGGCGGTGCCTCCGCCGTCGTCTCCTCCTCCGGCCTCCGTGAGCTCGTTTTCGTC 240
|||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 175 GGTGGTGGCGATGCCGCCGCCGTCGTCTCCTCCTCCGGCCTCCGTGATCTCGTTTTCGTC 234
Query 241 GTAAACCCTCAAGGTGCTAATGGTAGAACAGCTAAAGAATGGAAGAAGTTGCTTCCTTAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 235 GTAAACCCTCAAGGTGCTAATGGTAGAACAGCTAAAGAATGGAAGAAGTTGCTTCCTCAC 294
Query 301 CTTCGATCTCGTCTTGGTAAAGACTGTAATGTTAGTGAATCATTAACATCGGGTCCTTCT 360
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 295 CTTCGATCTCGTCTTGGTAAAGACTGTAATGTAAGTGAATTATTAACATCGGGTCCTTCT 354
Query 361 CATGCCATTGACATTACAAGAGAGGCTATAAGGGATGGTGCAGATGCTGTCATTGCGGTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CATGCCATTGACATTACAAGAGAGGCTATAAGGGATGGTGCAGATGCTGTCATTGCGGTT 414
Query 421 GGAGGTGATGGAACACTTCATGAGGTTGTTAATGGTTTCTTTTGGGAGGGGAAACCTGTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GGAGGTGATGGAACACTTCATGAGGTTGTTAATGGTTTCTTTTGGGAGGGGAAACCTGTC 474
Query 481 GGTAATCTCAACAGCGAAGCTAGTC-ATTCGACTGCACTTGGTCTGATTCCCTTAGGCAC 539
||| |||||| | |||||||||| || |||||||||||||||||||||||||||| ||
Sbjct 475 GGTTATCTCAGTGGGGAAGCTAGTCGAT-CGACTGCACTTGGTCTGATTCCCTTAGGTAC 533
Query 540 TGGCTCAGATTTTGCTAGAACATTTGGTTGGAACAATGATCCTTGTGAAGCGGTGGAGCG 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 534 TGGCTCAGATTTTGCTAGAACATTTGGTTGGAACAATGATCCTTGTGAAGCAGTGGAGCG 593
Query 600 CATTGCTAAAGGGATGCGATCACGGGTTGATGTTGGTGTTATCGACAAGGAAGGAAAGGA 659
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 594 CATTGCTAGAGGGATGCGATCACGGATTGATGTTGGTGTTATCGACAAGGAAGGAAAGGA 653
Query 660 TTTGCATTACTTCATCAACGTAGCTGATGTTCATTTGAGCGCAAAGGCTGGATTTTACGC 719
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 654 TTTGCATTACTTCATCAATGTAGCTGATGTTCATTTGAGCGCAAAGGCAGGATTTTACGC 713
Query 720 TTCAAAATACAAGAAATTTGGAAACTTGTGCTATGTAATTGGTGCCCTACAAGCTTTCAT 779
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 714 TTCAAAATACAAGAAATTTGGAAACTTGTGCTACGTAATTGGTGCCCTACAAGCGTTCAT 773
Query 780 GGGGCATCATAACCGAGATATGAGAATCAGAGTCAATGGAGGTGAATGGGAAATATATCC 839
||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 774 GGGCCATCATAACCAAGATATGAGAATCAGAGTCAATGGAGGCGAATGGGAAATATATCC 833
Query 840 TCAGGTCACTGCTCTCTGCGTTGGAAACGCTAAATACTTTGGTGGTGGAATGAAAATCAC 899
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 834 CCAGGTCACTGCTCTCTGCGTTGGAAACGCAAAATACTTTGGTGGTGGAATGAAAATCAC 893
Query 900 ACCCAACGCCGTCCCAGGAAATGGAAATCTTGAGGTTGTGGTTCTTCAAGACTTCAAATG 959
|||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 894 ACCCAACGCCATCCCTGGAAATGGAAATCTTGAGGTTGTGGTTCTTCAAAACTTCAAATG 953
Query 960 GTATGATTTCGTACTTAAACTTCATAAGCTATACAACGGGACGCATCTTTCGGTTAACAA 1019
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 954 GTATGATTTCGTACTTAAACTTCATAAGCTGTACAACGGGACTCATCTTTCGGTTAACAA 1013
Query 1020 TGTGACTTCAAGAAGTGTACAAAGTATCGAAGTTGAAGAGATTTCAGACAGTGGAAGTAT 1079
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1014 TGTGACTTCAAGAAGTGTACAAAGCATCGAAGTTGAAGAGATTACAGACAGTGGAAGTAT 1073
Query 1080 CTATGTTCAATCAGATGGAGAACATCTTGGATTTCTACCTAGAAAGTTTC-GGATGTTAC 1138
|||||| || ||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 1074 CTATGTGCAGTCAGATGGAGAACATCTTGGATTCCTACCTAGAAAGTTTCAGG-TGTTAC 1132
Query 1139 CCGGTGCCATCGACATAATCTGTTGATCAAAACCGCAGATTTCTTAGGATAAACTTGCCA 1198
|||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 1133 CCGGTGCCATAGACATAATCAGCTGATCAAAACCGCAGATTTCTTAGGATAAACTTGTCA 1192
Query 1199 AGAAAAGTGTAGAATACTTCAACTTTATATTCTTCTTCTGTAATTTGATTCATTGTTTAG 1258
|| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1193 AGTAAAGTGTAGAATACTTCAACTTTATATTCTTC--CTGTAATATGATTCATTGTTTAG 1250
Query 1259 CGAATCAGATTTATATGCTCGTGTTACTTGTGTTGCTCGTTACTATCACTATTTATTGTG 1318
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1251 CGAATCAGATTTAT--GCTCGTGTTACTTGTGTAACTCGTTACTATCACTATTTATTGTG 1308
Query 1319 TGGTCTCTGTTAACCACGAACAGATACTTT 1348
||||||||||||||||| || |||||||||
Sbjct 1309 TGGTCTCTGTTAACCACAAATAGATACTTT 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66365120490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5