BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483757
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46100.1 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 1404 0.0
AT2G46110.1 | Symbols: PANB1, KPHMT1 | ketopantoate hydroxymeth... 84.2 2e-15
> AT2G46100.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein | chr2:18953280-18954619 FORWARD LENGTH=921
Length=921
Score = 1404 bits (760), Expect = 0.0
Identities = 855/899 (95%), Gaps = 13/899 (1%)
Strand=Plus/Plus
Query 1 CACACAACTGAATCCAAAAAATGGTAGCTTCTCTTTCCTTTCATTCCATCGCCACCGTTA 60
|||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 CACAAAATTGAATCCTAAAAATGGTAGCTTCTCTTTCCTTTCATTCCATCGCCACCGTTA 86
Query 61 ATCCAATCTTCTCCGGCGATGGTGGTCGTTCAATTTTCCGG-CTTAACCGCCGATTCGAA 119
|||||||||||||||||||||||||||||||||| |||||| || || ||||||||||||
Sbjct 87 ATCCAATCTTCTCCGGCGATGGTGGTCGTTCAATCTTCCGGACT-AATCGCCGATTCGAA 145
Query 120 GCAACTGGAGTGAGTTGCAGAGGACAGAATCCGACTAACGAGCCACAGACAAGTAAAGGA 179
|||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct 146 GCAACTGGAGTGAGTTGCCGAGGACAGAATCCTACTGACGAGCCACAGACAAGTAAAGGA 205
Query 180 CCCGAGCCTGAGAATGTTCTACTCAAAATCGCTTGGTACGGATCCGAGCTACTCGGAATC 239
|||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 206 CCCGAGCCGGATAATGTTCTACTCAAAATCGCTTGGTACGGATCTGAGCTACTCGGAATA 265
Query 240 GCTGCTTCCGTTTTCCGATCTCCAGAGACTTCTCCGATTGTGACAGGCTTTGAGGTTCCT 299
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 266 GCTGCTTCTGTTTTCCGATCTCCGGAGACTTCTCCGATTGTGACAGGCTTTGAGGTTCCT 325
Query 300 GTTGATTGTTCTGGAGGAGCCGTTCGTGTAGCAGTCGTGGACTCGATTAAACAAGACTTT 359
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 326 GTTGATTGTTCTGGTCGAGCCGTTCGTGTAGCTGTCGTGGACTCGATTAAACAAGACTTT 385
Query 360 AAACGATCCTACTTCGTCACAGGTAATTTGACGCCGGAGGTTTATGAGGAGAAGTGTGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 AAACGATCCTACTTCGTCACAGGTAATTTGACGCCGGAGGTTTATGAGGAGAAGTGTGAA 445
Query 420 TTCGCTGATCCGGCTGGTTCCTTCAAGGGTCTTGCTCGTTTCAAAAGGAATTGCACTAAT 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TTCGCTGATCCGGCTGGATCCTTCAAGGGTCTTGCTCGTTTCAAAAGGAATTGCACTAAT 505
Query 480 TTCGGAAGCCTAATCGAGAAATCCAATATGAAGCTCATGAAATGGGAGAATTTTGAGGAT 539
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 TTCGGAAGCCTTATCGAGAAATCCAATATGAAGCTCATGAAATGGGAGAATTTTGAGGAT 565
Query 540 AAAGGAGTTGGACATTGGAAATTTAGCTGTGTCATGTCGTTTCCATGGAAACCCATTCTT 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 AAAGGAATTGGACATTGGAAATTTAGCTGTGTCATGTCGTTTCCATGGAAACCCATTCTT 625
Query 600 TCAGCAACTGGTTACACGGAATACTT-TTTCGACCCAGAATCCGGGAAAATTTGCAGGCA 658
|||||||||||||||||||| || || ||||||| |||||||||||||||||||||||||
Sbjct 626 TCAGCAACTGGTTACACGGAGTA-TTATTTCGACACAGAATCCGGGAAAATTTGCAGGCA 684
Query 659 CGTGGAGCATTGGAATGTCCCTAAGATTGCTCTGTTCAAGCAACTTCTGAGACCCAGCCG 718
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 685 CGTGGAGCATTGGAATGTCCCTAAGATTGCTCTGTTCAAACAACTTCTGAGACCCAGCCG 744
Query 719 TGGTTTAGTgggggggACACAAAACTAGTG--GATGAAGAATGATGTCAATTTCAAATTA 776
||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct 745 TGGTTTAGTGGGG---ACACAAAACTAGCGCAGATGAAGAATGATGTCAATTTCAAATTA 801
Query 777 GATTTTTTAAACCGTAAATATATGGAAACTTCCTTCTGAAACTAATA-G--ATACTGTAC 833
|||||||| ||||||||||||||| |||||| ||||||||||||||| | ||||| | |
Sbjct 802 GATTTTTTTAACCGTAAATATATG-AAACTTGCTTCTGAAACTAATATGGGATACTCTGC 860
Query 834 TATTAGAGATATGTAATGAATCTATTGAAGATGACACATATAAACATACTATCACTGTC 892
| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 861 TCTTAGAGATCTGTAATGAATCTATTCAAGATGACACATATAAACATACTATCACTGTC 919
> AT2G46110.1 | Symbols: PANB1, KPHMT1 | ketopantoate hydroxymethyltransferase
1 | chr2:18954570-18956530 REVERSE LENGTH=1400
Length=1400
Score = 84.2 bits (45), Expect = 2e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 845 TGTAATGAATCTATTGAAGATGACACATATAAACATACTATCACTGTC 892
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1400 TGTAATGAATCTATTCAAGATGACACATATAAACATACTATCACTGTC 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43553005449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5