BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483759

Length=622
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46140.1 | Symbols:  | Late embryogenesis abundant protein |...   946    0.0  


> AT2G46140.1 | Symbols:  | Late embryogenesis abundant protein 
| chr2:18959078-18960547 FORWARD LENGTH=771
Length=771

 Score =  946 bits (512),  Expect = 0.0
 Identities = 551/570 (97%), Gaps = 2/570 (0%)
 Strand=Plus/Plus

Query  1    agagagagagagataaagagagaTCTGATCCTTTGAAGAAACAACa--aaaaaaaaaaGA  58
            ||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||| |
Sbjct  20   AGAGAGAGAGAGACAAAGAGAGATCTGATCCTTTGAAGAAACAACACCAAAAAAAAAAAA  79

Query  59   AGAAGAATGGCATCGGCGGATGAAAAGGTGGTGGAAGAAAAGGCGTCCGTGATTTCAAGC  118
            | |||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct  80   AAAAGAATGGCATCAGCGGATGAAAAGGTGGTGGAAGAGAAGGCTTCGGTGATTTCAAGC  139

Query  119  TTGTTGGACAAAGCCAAAGGTTTCTTTGCGGAGAAGCTGGCGAATATTCCGACGCCGGAA  178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  140  TTGTTGGACAAAGCCAAAGGTTTCTTTGCGGAGAAGCTGGCGAATATTCCGACGCCGGAA  199

Query  179  GCCACCGTGGACGACGTTGATTTCAAAGGCGTTACACGTGAAGGAGTTGATTATCACGCC  238
            || ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct  200  GCAACCGTGGACGACGTTGATTTCAAAGGCGTGACACGTGATGGAGTAGATTATCACGCC  259

Query  239  AAGGTCTCCGTCAAGAATCCTTACTCTCAATCCATCCCTATTTGCCAGATCTCTTACATC  298
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  260  AAGGTCTCCGTCAAGAATCCTTACTCTCAATCCATCCCTATCTGCCAGATCTCTTACATC  319

Query  299  CTCAAGAGTGCCACAAGGACGATCGCGTCAGGCACAATACCGGACCCGGGCTCGTTGGTT  358
            ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  320  CTCAAGAGTGCCACAAGGACGATCGCGTCAGGCACGATACCGGACCCGGGTTCGTTGGTT  379

Query  359  GGGAGCGGCACGACGGTTCTGGACGTACCGGTTAAGGTGGCTTATAGCATAGCGGTTAGT  418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  380  GGGAGCGGCACGACGGTTCTGGACGTACCGGTTAAGGTGGCTTATAGCATAGCGGTTAGT  439

Query  419  CTGATGAAGGACATGTGTACGGACTGGGACATTGACTATCAACTCGACATTGGGCTAACC  478
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  440  CTGATGAAGGATATGTGTACGGACTGGGACATTGACTATCAACTAGACATTGGGCTAACC  499

Query  479  TTCGACATTCCTGTTGTTGGTGACATCACCATTCCTGTCTCTACTCAGGGAGAGATCAAG  538
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  500  TTCGACATTCCTGTTGTTGGTGATATCACCATTCCTGTCTCTACTCAGGGAGAGATCAAG  559

Query  539  CTCCCTTCCCTTCGCGACTTCTTTTAATTA  568
            ||||||||||||||||||||||||||||||
Sbjct  560  CTCCCTTCCCTTCGCGACTTCTTTTAATTA  589



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29989785759


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5