BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483760
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46150.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1284 0.0
> AT2G46150.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr2:18961403-18962376
FORWARD LENGTH=974
Length=974
Score = 1284 bits (695), Expect = 0.0
Identities = 883/968 (91%), Gaps = 36/968 (4%)
Strand=Plus/Plus
Query 1 AAAAAACACACCATGACAGATTCCGAACATGTTCGTCCGCTAGCTCCGGCGACCATACTT 60
||||||| ||||||| ||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 11 AAAAAAC-CACCATGGCAGATTCTGAACATGTACGGCCGCTAGCTCCGGCGACCATACTT 69
Query 61 CCGGTGAGCGATGAATCCGCCTCCAACATCAAGAACACTCACCGTCGTAGAAACCGACTC 120
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| || ||
Sbjct 70 CCGGTGAGCGATGAATCCGCCTCCAACATCAAGAACACACACCGTAGTAGAAACAGAATC 129
Query 121 AAATGCTTAATCTGCGTCATTGCAACATCTCTAATTCTAACCACGATCGTGTTGACTTTA 180
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 130 AAATGCTCAATCTGCGTCACTGCAACATCTCTAATTCTAACCACGATCGTGTTGACTTTA 189
Query 181 GTTTTCACGTTGTTCAGAGTCAAAGACCCGATCATAAAAATGAACGGCGTAATGGTCAAC 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 GTTTTCACGGTGTTCAGAGTCAAAGACCCGATCATAAAAATGAACGGCGTAATGGTCAAC 249
Query 241 GGCCTAGATTCAGTCACGGGGATTAATCAGGTCCAACTGTTGGGGACAAACATCTCGATG 300
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 250 GGCCTAGATTCAGTCACGGGGACTAATCAAGTCCAACTGTTGGGGACAAACATCTCGATG 309
Query 301 ATCGTTGACGTGTCGGTCAAGAATCCAAATATGGCGTCGTTTAAGTACTCCAACACCACG 360
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 310 ATCGTTGACGTATCGGTCAAGAATCCGAATACGGCGTCGTTTAAGTACTCCAACACCACG 369
Query 361 ACGGATATATATTACAAAGGAACGTTGGTGGGTGAAGCACATGGGCTACCGGGGAAGGCG 420
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 370 ACGGATATATACTACAAAGGAACGTTGGTGGGTGAAGCGCATGGGCTACCGGGGAAGGCG 429
Query 421 AGACCGCATCGGACTTCGAGGATGAACTTGACGGTTGATATTATGATTGATCGGATATTA 480
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 430 AGACCGCATCGGACTTCGAGGATGAACGTGACGGTTGATATTATGCTTGATCGGATATTA 489
Query 481 TCGGATCCGGGTTTGGGTCGAGAATTAAGTAGGTCGGGTCTTGTGAACATGTGGAGTTAC 540
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 490 TCGGATCCGGGTTTGGGTCGAGAAATAAGTAGGTCGGGTCTTGTGAACGTGTGGAGTTAC 549
Query 541 ACTAGGGTTGGTGGTAAGGTAAAGATTTTGGGGATCGTGAAGAAGCATGTGACCGTTAAG 600
|||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||
Sbjct 550 ACTAGGGTTGGTGGTAAGGTGAAGATTATGGGGATCGTGAAGAAGCACGTGACCGTTAAG 609
Query 601 ATGAATTGCACGATGGCTGTGAACATTACGGGCCAGGCGATTCAAGATGTCGATTGCAAG 660
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 610 ATGAATTGCACGATGGCTGTGAACATTACGGGACAGGCGATTCAAGATGTTGACTGCAAG 669
Query 661 aaaaaaaTCGATCTTTGAGGTATACGTTATAGGATCGATCGATTAACttttttttttctt 720
||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||
Sbjct 670 AAAAAAATCGATCTTTGAGGTATACGTCATACGATCGATCGATTAACGTTTTTTTTT-TT 728
Query 721 cttatgttttgttttgtttttCAACAACGTGAGATATGCGGATTAGAATCTT-CAATGAC 779
||| | | |||||||||||||||||||||||| ||| | ||||
Sbjct 729 -TTA-G----------------A-CAACGTGAGATATGCGGATTAGAAACTTTCG-TGAC 768
Query 780 AGCAGTAGCACCAACACAAAATACTATTTACATGTTCTAGTTGCTTTTTaaaaaaaTTGG 839
| | | ||||||| |||| ||||| ||| ||||||||||| ||||||||||| ||||
Sbjct 769 A--A--A--ACCAACAAAAAACACTATCTACTTGTTCTAGTTGTTTTTTAAAAAATTTGG 822
Query 840 GTCAttttatttttagcacgatg-a-tagact-tgtttctttatcttttcttctttttac 896
||||||| ||| | ||||||||| | |||| | ||||||||||| |||||||||| || |
Sbjct 823 GTCATTTGATTATCAGCACGATGCAATAGA-TGTGTTTCTTTATGTTTTCTTCTTCTTGC 881
Query 897 aaaaatt-ttt--gtacagtttatcggattttGAATGGAGTGAACATAAAGTCTACGTTA 953
|||| || ||| |||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 882 AAAATTTGTTTTTGTACAGTTGATCAGATTTTGAATGGAGTGAACATAAAGTCTACGTTA 941
Query 954 AATATATA 961
|||| |||
Sbjct 942 AATAAATA 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47019161592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5