BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483764
Length=2386
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46180.1 | Symbols: GC4 | golgin candidate 4 | chr2:18967359... 3690 0.0
AT3G61570.1 | Symbols: GC3, GDAP1 | GRIP-related ARF-binding do... 1574 0.0
> AT2G46180.1 | Symbols: GC4 | golgin candidate 4 | chr2:18967359-18971350
REVERSE LENGTH=2391
Length=2391
Score = 3690 bits (1998), Expect = 0.0
Identities = 2265/2393 (95%), Gaps = 22/2393 (1%)
Strand=Plus/Plus
Query 1 CGATAATAATCTTACAGAGGAAGATTCTTGTCCCTTTGATAAATTCTCGGAGT---AGGA 57
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2 CGATAATAATCTTACAGAGGAAGATTCTTGTCTCTTTGATAAATTCTCGGAGTAGGAGGA 61
Query 58 TTCTCTGACTCTGTTCGTTTTCTTACGAGTTGAGCTATGTGGAGTTCGGTTGCCAATTTG 117
|||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 62 ATCTCTGACTC----C---TTCGGGCGAGTTGAGCTATGTGGAGTTCGGTTGCCAATTTG 114
Query 118 AAGGAGAATTTGAACAAGATCGCCCACGATGTGCACGACGACGACGAAGATGATGATGAA 177
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 115 AAGGAGAATTTGAACAAGATTGCGCACGATGTGCATGACGACGACGAAGATGATGATGAA 174
Query 178 GATCTCACCATTTATGGGTCCACCAATGGCGGCGCTGATCGGAGGAATTCTAATGGATTT 237
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 175 GATCTCACCATTTATGGGTCCACCAATGGCGGCACTGATCGGAGGAATTCTAATGGCTTT 234
Query 238 AGGTATTCGAGGTCTCCAATGGCCAATGGTGTCGAATCGCCTATTAATCATGAGATTGAG 297
|||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 235 AGGTATTCGAGGTCTCCAATGGCCAATGGTTTCGAATCGCCTGTTAATCCTGAGATTGAG 294
Query 298 AGATATAAAGCGGAGATCAACAAGCTTCAAGAATCAGAAGCAGAAATCAAAGCTCTCTCA 357
||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 295 AGATATAAAGCAGAGATCAACAAGCTTCAAAAATCAGAATCAGAAATCAAAGCTCTTTCA 354
Query 358 GTAAATTATGCGGCTCTTTTAAAAGAAAAAGAGGATCAGATTTCCAGATTGAACCAGGAG 417
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 355 GTAAATTATGCGGCTCTACTAAAAGAGAAAGAGGATCAGATTTCCAGATTGAACCAGGAG 414
Query 418 AATGGCTCGTTGAAACAGAATTTGACTTCAACTAATGCCGCTCTTAAAGAGTCTAGAATG 477
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 415 AATGGCTCCTTGAAACAGAATTTGACTTCAACTAATGCCGCTCTTAAAGAGTCTAGATTG 474
Query 478 GATCTTTCCAGGGCATCAAACAATAATGCTATCAAGGGAAACGGTGATCATTCACCCAAC 537
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 475 GATCTTTCGAGGGCATCGAACAATAATGCTATCAAGGGAAATGGTGATCATTCACCCAAC 534
Query 538 AGGTCACAAAAATCTCCGACTAATTGGAAAAGCCGAAACCAAATGTACAATGGCATTGCC 597
|||||||||| ||| || ||||||||||||| |||||||||||| ||||||||||||||
Sbjct 535 AGGTCACAAAGATCCCCAACTAATTGGAAAAATCGAAACCAAATGAACAATGGCATTGCC 594
Query 598 TCAAAACAAAACGGGACAGAGAATGATTCCGAGTCGCATAAAAAAGAAAAGGAGTTTGCA 657
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TCGAAACCAAACGGGACAGAGAATGATTCCGAGTCGCATAAAAAAGAAAAGGAGTTTGCA 654
Query 658 GATATGCTTGAAGAGAGAACCAGGTCAATGGCATCTGCTCAGGCTAGAGAACTTGAGAAA 717
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 655 GAGATGCTTGAAGAGAGAACCAGATCAATGGCATCTGCTCAGGCTAGAGAACTTGAGAAA 714
Query 718 GAGCGAGAAAAATCAGCAAATCTGCAGATTTCACTACAGGAGGAGCGGAAACAAAATGAC 777
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 715 GAGCGAGAAAAATCAGCAAATCTGCAGATTTTACTACAGGAGGAGCGGAAACAAAATGAG 774
Query 778 TCTTTCAAGGAGGAACTCCAGTTTCTGAGGTTAGATAAGGAAAAAACACTCATGGAGAGT 837
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 775 ACTTTCAAGGAGGAACTCCAGTCTCTGAGGTTAGATAAGGAAAAAACACTCATGGAGAGT 834
Query 838 AACAAAGTACGTCATGAATTGGATGCAAAATTGGCTGAAATCAAACAACTGCAGATGAAG 897
||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 835 AACAAAGTACGTCGTGAATTGGATGCAAAATTGGCTGAAATCAGACAATTGCAGATGAAG 894
Query 898 TTGAATGGTGGGGAGCAGCATG---TTGGAATTTCCATAGAAAATCTAAAAGAGGTTAAC 954
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 895 TTGAATGGTGGGGAGCAGCATGCTTTTGGAATTTCCAGAGAAAATCTAAAAGAGGTTAAC 954
Query 955 AAAGCTCTGGAGAAAGAAAATAATGAGCTTAAGTTGAAACGAAGTGAATTAGAGGCTGCT 1014
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AAAGCTCTGGAGAAGGAAAATAATGAGCTTAAGTTGAAACGAAGTGAATTAGAGGCTGCT 1014
Query 1015 TTGGAAGCAAGCCAGAGGTCAACAAGTAGGAAACTCTTCCCAGAGGGAACAGAGGCTCTT 1074
|||||||||||||||| ||||||||||||||||||||||||| || | ||||||| ||||
Sbjct 1015 TTGGAAGCAAGCCAGAAGTCAACAAGTAGGAAACTCTTCCCAAAGAGCACAGAGGATCTT 1074
Query 1075 AGTAGACATCGTAGTAGTTTGGACAAGGAAAAGCCCGAAAGCTTCCCTGGGAAAGAAGAT 1134
|||||||| | ||||||||||||| |||| ||| ||| || |||||||||||||||||||
Sbjct 1075 AGTAGACACCTTAGTAGTTTGGACGAGGAGAAGGCCGGAACCTTCCCTGGGAAAGAAGAT 1134
Query 1135 TTGGAGAAATCTTTGCAGAGGCTGGAAAGGGAGTTGGAGGAAGCACGAAGAGAAAAGGAT 1194
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1135 ATGGAAAAATCTTTGCAGAGGCTGGAAAAGGAGTTGGAGGAAGCACGAAGAGAAAAGGAT 1194
Query 1195 AAGGCACGGCAAGAACTAAAACGGCTCAAACAACACCTGTTAGAAAAGGAAACTGAGGAG 1254
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1195 AAGGCACGGCAAGAACTAAAGCGGCTCAAACAACACCTGTTAGAAAAGGAAACCGAGGAG 1254
Query 1255 TCTGAGAAAATGGATGAAGATAGTAGATTGATTGAAGAACTCCGCCAGACGAATGAATAT 1314
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1255 TCTGAGAAAATGGATGAAGATAGTAGATTGATTGACGAGCTCCGCCAGACGAATGAATAT 1314
Query 1315 CAGAGGTCTCAGATACTAGGTTTAGAAAAAGCTCTTAGGCAGACAATGGCTAATCAGGAG 1374
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CAAAGGTCTCAGATACTAGGTTTAGAAAAAGCTCTTAGGCAGACAATGGCTAATCAGGAG 1374
Query 1375 GAAATAAAGTCTAGCAACGACCTTGAAATCCGGAAGTCCAAGGGTATAATTGAAGACTTA 1434
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GAAATAAAGTCGAGCAGTGACCTTGAAATCCGGAAGTCCAAGGGTATAATTGAAGACTTA 1434
Query 1435 AATCAAAAGCTTGCGAATTGTTTGAGAACAATAGATTCCAAAAATGTGGAACTTTTAAAT 1494
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1435 AATCAAAAGCTGGCGAATTGTTTGAGAACGATAGATTCCAAAAATGTGGAGCTTTTGAAT 1494
Query 1495 CTTCAAACTGCTCTTGGCCAGTACTACGCTGAAATTGAAGCTAAGGAACATTTTGAACGA 1554
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CTTCAAACTGCTCTTGGTCAGTACTACGCTGAAATTGAAGCTAAGGAACATTTTGAACGA 1554
Query 1555 GAGCTTGCAGTGGCTAAAGAAGAGGCAATGAAACTCTCAGCTCGTTTGAAAGATGTTGAT 1614
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1555 GAGCTTGCAGTGGCTAAAGAAGATGCAATGAAACTCTCAGCTCGTTTGAAAGATGTTGAT 1614
Query 1615 GAACGGTTAGAGTCATCAAAGAAAGAAAAGGAGGAAATCACATCGAAGCTGTTGCACGCA 1674
|||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1615 GAACAGTTAGAGTCATCAAAGAAAGAAAAGGAGGAAATCACATCGAAGGTATTGCACGCA 1674
Query 1675 GAAAATATTGCAGCAGAATGGAAAAACAGAGTAAGCAAGGTTGAAGAAGACAATGCAAAA 1734
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1675 GAAAATATTGCAGCAGAATGGAAAAACAGAGTAAGCAAGGTTGAAGATGACAATGCAAAA 1734
Query 1735 GTAAGGCGTGTTCTTGAGCAGAGCATGACTAGGCTCAATAGAATGTCAATGGACTCCGAT 1794
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1735 GTAAGGCGTGTTCTTGAGCAGAGCATGACTAGGCTCAATAGAATGTCAATGGACTCTGAT 1794
Query 1795 TTTCTTGTTGATAGGCGTATTGTTATCAAGTTACTGGTTACGTACTTCCAAAGGAATCAC 1854
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1795 TTTCTCGTTGATAGGCGTATTGTTATCAAGTTGCTGGTTACGTACTTCCAAAGGAATCAC 1854
Query 1855 AGCAGAGAGGTGTTGGAGCTAATGGTTCGAATGCTTGGATTCTCAGAGGAAGACAAACAG 1914
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1855 AGCAGAGAGGTGTTGGACCTAATGGTTCGAATGCTTGGATTCTCGGAGGAAGAAAAACAG 1914
Query 1915 CGAATAGGATTGGCACAGCAAGGAGCTGCAGGTAAAGGTGTTGTTAGAGGTGTGTTGGGC 1974
||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 1915 CGAATAGGATTGGCACAACAAGGAGCGGCAGGTAAAGGTGTTGTTAGAGGTGTATTGGGT 1974
Query 1975 TTCCCGGGTCGCTTAGTCGGTGGCATCTTAGGCggtggtggtggtggtggtACACCGGAT 2034
|| ||||||||||||||||||||||||||||||||||| ||||| | || ||| ||
Sbjct 1975 TTTCCGGGTCGCTTAGTCGGTGGCATCTTAGGCGGTGGCGGTGGC--TC--AC-CCG-AT 2028
Query 2035 TCTCATCCAAATATTGCGTCAGATAATCAGTCTTTCGCAGACATGTGGGTCGATTTTCTA 2094
|||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 2029 TCTCATCCAAATATGGCTTCAGATAATCAGTCTTTTGCAGACATGTGGGTCGAATTTCTA 2088
Query 2095 CTTAaagacgcggaagagcgagagagaagagaagcagaagatgcagcaaacaaagagcaa 2154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2089 CTTAAAGACGCGGAAGAGCGAGAGAGAAGAGAAGCAGAAGATGCAGCAAACAAAGAGCAA 2148
Query 2155 gagaagGCTACTGTTTCTTCTACGCAGAGACCAATGTATGAACAATCTGATTCGGAGTTT 2214
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2149 GAGAAGGCTACTGTTTCTTCTACGCAGAGACCAAAGTATGAACAATCTGATTCGGAGTTT 2208
Query 2215 TCAACGGTGCCTCTTACATCATCGGATAGTAATCACAGGCTCTCCAGATTACTCACTTGA 2274
||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 2209 TCAACTGTGCCTCTTACATCATCGAATAGTAATCACAGGCTCTCTAGATTACTCACTTGA 2268
Query 2275 CT-GGATTTGGTATATACTTTTTATACACGTTTTGTAGGAATCTATAATCCGAATCTCTT 2333
|| || |||||||||||| ||| ||||||||||||||| |||||| |||||||| |||||
Sbjct 2269 CTCGG-TTTGGTATATACATTT-ATACACGTTTTGTAGAAATCTAAAATCCGAAACTCTT 2326
Query 2334 GCTTCTTGTGTTGTAATTATCTCTCTCACAACTATATTCCATTGATTCTTTTT 2386
|||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 2327 GCTTCTTGTGTTGTAATTATCTCTCTCACACCTATATTCTATTAATTCTTTTT 2379
> AT3G61570.1 | Symbols: GC3, GDAP1 | GRIP-related ARF-binding
domain-containing protein 1 | chr3:22779441-22783834 REVERSE
LENGTH=2527
Length=2527
Score = 1574 bits (852), Expect = 0.0
Identities = 1697/2093 (81%), Gaps = 105/2093 (5%)
Strand=Plus/Plus
Query 89 GAGCTATGTGGAGTTCGGTTGCCAATTTGAAGGAGAATTTGAACAAGATCGCCCACGATG 148
|||||||||||||||| ||| ||| |||||| ||| ||| ||||||||| | |||||
Sbjct 188 GAGCTATGTGGAGTTCAATTGAGAATATGAAGGCGAACTTGCACAAGATCGTTCTCGATG 247
Query 149 TGCACGACGACGACGAAGATGATGATGAAGATCT-CACCATTTATGGGTCCACCAATGGC 207
|||| || ||||||||||| | || || ||||| || || ||||| ||| ||||||||
Sbjct 248 TGCATGAAGACGACGAAGA--A-GAAGACGATCTCCA-CAAATATGGTTCCGCCAATGGC 303
Query 208 G----G--CGCTGATCGGAGGAATTCTAATGGATTTAGGT---ATTCGAGGTCTCCAATG 258
| | | |||||||||||||||| | ||| ||||||| |||||||| | | ||
Sbjct 304 GTATCGAACTCTGATCGGAGGAATTCCAGTGGTTTTAGGTCCGTTTCGAGGTATTCGATC 363
Query 259 GCCAATGGTGTCGAATCGCCTATTAATCATGAGATTGAGAGATATAAAGCGGAGATCAAC 318
||||||| | ||||||||| | |||||||||||||| | ||||| || ||||| ||
Sbjct 364 TCCAATGGAATTGAATCGCCTGCTCATCATGAGATTGAGCGGTATAAGGCAGAGATTAAG 423
Query 319 AAGCTTCAAGAATCAGAAGCAGAAATCAAAG-CTCTCTCAGTAAATTATGCGGCTCTTTT 377
|||||||| ||||||||| |||| ||||||| || | || ||||||||||| ||||| ||
Sbjct 424 AAGCTTCAGGAATCAGAATCAGATATCAAAGCCT-TATCTGTAAATTATGCAGCTCTCTT 482
Query 378 AAAAGAAAAAGAGGATCAGATTTCCAGATTGAACCAGGAGAATGGCTCGTTGAAACAGAA 437
|| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 483 AAGAGAGAAAGAGGATCAGATTTCCAGATTGAATCAGGAGAATGGCTCTTTGAAACAAAA 542
Query 438 TTTGACTTCAACTAATGCCGCTCTTAAAGAGTCTAGAATGGATC-TTTCCAGGGCATCAA 496
| |||| ||||||| |||||||||||||||| |||||| || | ||||||||| |||||
Sbjct 543 TCTGACCTCAACTAGTGCCGCTCTTAAAGAGGCTAGAACCGA-CATTTCCAGGGGATCAA 601
Query 497 ACAA-TAATGCTATCAAGGGAAACGGTGATCATTCACCCAACAGGTC-ACAAAAATCTCC 554
|||| | ||||||||||||||||| |||||| |||||||| ||| | ||| ||||||
Sbjct 602 ACAACT-ATGCTATCAAGGGAAACAATGATCAGTCACCCAATAGG-CTACACAAATCTGT 659
Query 555 GACTAATTGGAAAAG-CCGAAACCAAATGTACAATGGCATTGCCTCAAAACAAAACGGGA 613
| ||| ||||| || |||||| |||| |||| | | |||| ||||
Sbjct 660 TTCGCATTTAAAAAGTCC-AAACCATATGTCCAAT-G----G---------AAAA-GGGA 703
Query 614 CAGAGAATGATTCCGAGTCGCATAAAAAAGAAAAGGAGTTTGCAGATATGCTTGAAGAGA 673
|| | || | |||| ||| || ||| |||||||| ||||||||||||| ||||| |
Sbjct 704 -AG-G-AT-A--CCGATTCGTTTATAAAGGAAAAGGACCTTGCAGATATGCTAGAAGATA 757
Query 674 GAACCAGGTCAATGGCATCTGCTCAGGCTA-GAGAACTTGAGAAAGAGCGAGAAAAA-TC 731
|||||| ||||||||| ||| ||| |||| | || |||| |||||||| |||||| |
Sbjct 758 GAACCAAATCAATGGCAGCTGTTCAAGCTACG-GAGCTTGCCAAAGAGCGTGAAAAATTA 816
Query 732 AGCAAATCTGCAGATTTCACTACAGGAGGAGCGGAAACA-AAATGACTCTTTCAAGGAGG 790
|| | || | ||| | || |||||||||||||||||| | | ||| ||||||||||| |
Sbjct 817 AG-AGATTTTCAGCTATCTCTACAGGAGGAGCGGAAA-AGGAGTGAATCTTTCAAGGAAG 874
Query 791 AACTCCAGTTTCTGAGGTTAGATAAGGAA-AAAACACT-CATGGAGAGTAACAAAGTACG 848
||||| ||| | ||||||||||||| || ||||| || |||||||| || |||| | ||
Sbjct 875 AACTCGAGTCTATGAGGTTAGATAA-AAACAAAAC-CTCCATGGAGATTAGCAAAATGCG 932
Query 849 TCA-TGAATTGGATGCAAAATTGGC-TGAAATCAAACAACTGCAGATGAAGTTGAATGGT 906
| | |||||||||||||||||| | |||||||||||| |||||||||||||||| ||||
Sbjct 933 T-AGTGAATTGGATGCAAAATT-ACTTGAAATCAAACACCTGCAGATGAAGTTGACTGGT 990
Query 907 --GGGGAG-CA-GCATGTTGGAATTTCCATAGAAAATCTAAAAGAGGTTAACAAAGCTCT 962
|| || || || | ||||| | ||| ||| |||| ||||| ||||||||||||||
Sbjct 991 CAGGAAAGCCATGC-TATTGGACCTGGCATGGAACATCTGAAAGAAGTTAACAAAGCTCT 1049
Query 963 GGAGAAAGAAAATAATGAGCTTAAGTTGAAACGAAGTGAATTAGAGGCTGCTTTGGAAGC 1022
|||||| ||||| || ||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 1050 GGAGAAGGAAAACAACGAGCTTAAGTTGAAACGAAGTGAGCTAGAAGCTGCTTTAGAAGA 1109
Query 1023 AAGCCA-G-AGGTCAA-CAAGTAGGAAACTCTTCCCAGAGGGAACAGAGGCTCTTAGTAG 1079
||| || | || | || ||| ||| ||| ||||||| || | |||||| |||| | |||
Sbjct 1110 AAG-CAGGAAGCT-AACCAA-TAGCAAAGTCTTCCCGGACGCCACAGAGTCTCTGACTAG 1166
Query 1080 ACATCGTAGTAGTTTGGACAAGGAAAAGCCCGAAAGCTTCCCTGGGAAAGAAGATTTGGA 1139
|||| ||||| |||||||||||| ||||| |||||||| ||||| |||||||| ||||
Sbjct 1167 GCATCCTAGTACTTTGGACAAGGAGAAGCCTGAAAGCTTTCCTGGAAAAGAAGAAATGGA 1226
Query 1140 GAAATCTTTGCAGAGGCTGGAAAGGGAGTTGGAGGAAGCACGAAGAGAAAAG-GATAAGG 1198
| |||| |||||||| |||||| ||| ||| ||||| ||| ||||| |||| |||||||
Sbjct 1227 GCAATCCCTGCAGAGGTTGGAAATGGATTTGAAGGAAACACAAAGAG-AAAGAGATAAGG 1285
Query 1199 CACGGCAAGAACTAAAACGGCTCAAACAACACCTGTTAGAAAAGGAAACTGAGGAGTCTG 1258
||||||||||| ||||||| |||||||| ||| || ||||||||||||| ||||||||||
Sbjct 1286 CACGGCAAGAATTAAAACGACTCAAACAGCACTTGCTAGAAAAGGAAACAGAGGAGTCTG 1345
Query 1259 AGAAAATGGATGAAGATAGTAGATTGATTGAAGAACTCCGCCAGACGAATGAATATCAGA 1318
||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| |
Sbjct 1346 AGAAAATGGATGAAGATAGCCGACTGATTGAAGAACTCCGCCAGACTAATGAATATCAAA 1405
Query 1319 GGTCTCAGATA-CTAGGTTTAGA-AAAAGCTCTTAGGCAGACAATGGCTAATCAGGAGGA 1376
||||||||||| | | || || ||||| ||||| |||| | || | |||||||||||
Sbjct 1406 GGTCTCAGATATC-ACACTTGGAGAAAAG-TCTTAAGCAGGCCATCTCGAATCAGGAGGA 1463
Query 1377 -AATAAAGTCTAGCAACGACCTTGAAATCCGGAAGTCCAAGGGTATAATTGAAGACTTAA 1435
|| | | | ||||| ||| ||||||| || | |||| | | |||| ||| |||
Sbjct 1464 TAACAGATTG-AGCAATGACAACCAAATCCGAAAATTAAAGGACACAGTTGATGACCTAA 1522
Query 1436 ATCAAAAGCTTGCGAATTGTTTGAGAACAATAGATTCCAAAAATGTGGAACTTTTAAATC 1495
||||||| ||| | ||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct 1523 ATCAAAAACTTACAAATTGTTTGAGAACAATCGAGTCCAAGAATGTTGAACTTTTAAATC 1582
Query 1496 TTCAAACTGCTCTTGGCCAGTACTACGCTGAAATTGAAGCTAAGGAACATTTTGAACGAG 1555
||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 1583 TTCAAACTGCTCTAGGCCAGTATTACGCTGAAATCGAAGCTAAGGAGCATTTTGAACGAG 1642
Query 1556 AGCTTGC-AGTGGCTAAAGAAGAGGCAATGAAACTCTCAGCTCGTTTGAAAGATGT-TGA 1613
||||||| | |||||||||| ||| ||||| || || ||||||||||||||| | |||
Sbjct 1643 AGCTTGCGA-TGGCTAAAGACGAGTTGATGAAGCTTTCTGCTCGTTTGAAAGAT-TCTGA 1700
Query 1614 TGAACGGTTAGAGTCATCAAAGAAAGAAAAGGAGGAAATCACATCGAAGCTGTTGCACGC 1673
||| ||||||||||||||||| ||||||||||| || ||||||| || | ||||| ||
Sbjct 1701 TGAGCGGTTAGAGTCATCAAATAAAGAAAAGGAAGATGTCACATCCAAATTATTGCATGC 1760
Query 1674 AGAAAATA-TTGCAGCAGAATGGAAAAACAGAGTAAGCAAGGTTGAAGAAGACAATGCAA 1732
||||| | ||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1761 GGAAAA-AGTTGCAGCGGAATGGAAAAACAGAGTAACCAAGGTTGAAGAAGACAATGCAA 1819
Query 1733 AAGTAAGGCGTGTTCTTGAGCAGAGCATGACTAGGCTCAATAGAATGTCAATGGACTCCG 1792
||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 1820 AAGTACGACGTGTTCTTGAGCAGAGCATGACAAGGCTCAATAGAATGTCAATGGAGTCTG 1879
Query 1793 ATTTTCTTGTTGATAGGCGTATTGTTATCAAGTTACTGGTTACGTACTTCCA-AAGGAAT 1851
||| ||||||||||||||| || ||||| || || |||||||| |||||||| ||| |||
Sbjct 1880 ATTATCTTGTTGATAGGCGAATCGTTATTAAATTGCTGGTTACATACTTCCAGAAG-AAT 1938
Query 1852 CACAGCAGAGAGGTGTTGGAGCTAATGGTTCGAATGCTTGGATTCTCAGAGGAAGACAAA 1911
|| | || |||||| ||||| || |||||||| ||||| ||||| ||||||||||| |||
Sbjct 1939 CATAACAAAGAGGTTTTGGACCTCATGGTTCGGATGCTAGGATTTTCAGAGGAAGATAAA 1998
Query 1912 CAGCGAATAGGATTGGCACAGCAAGGAGCTGCAGGTAAAGGTGTTGTTAGAGGTGTGTTG 1971
|||| || ||| |||| | ||||||| | ||||||||| ||||||||||| || |||
Sbjct 1999 GAGCGGATTGGAGCGGCAAAACAAGGAG--G-AGGTAAAGGAGTTGTTAGAGGCGTATTG 2055
Query 1972 GGCTTCCCGGGTCGCTTAGTCGGTGGCATCTTAGGCggtggtggtggtggtggtACACCG 2031
||||| ||||| ||||| ||||| || || || || | ||| | | || | | |
Sbjct 2056 GGCTTTCCGGGCCGCTTTGTCGGAGGAATTTT-GG-G-TGG-GAAA-TC-TGC-AGA--G 2106
Query 2032 GATTCTCATCCAAATATTGCGTCAGATAATCAGTCTTTCGCAGA-CATGTGGGTCGATTT 2090
|| ||| | ||| || || ||||| |||||||| || || | | |||||||||||
Sbjct 2107 --TTA-CATGCTAATGCAGCTTCTGATAACCAGTCTTTTGCGGATC-TATGGGTCGATTT 2162
Query 2091 TCT-ACTTAaagacgcggaagagcgagagagaagagaagcagaagatgcagca 2142
|| ||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2163 -CTTACTCAAAGACGCGGAAGAGCGAGAGAGAAGAGAAGCAGAAGAAGCAGCA 2214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118473286200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5