BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483765
Length=719
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46192.1 | Symbols: | other RNA | chr2:18973307-18974133 FO... 760 0.0
> AT2G46192.1 | Symbols: | other RNA | chr2:18973307-18974133
FORWARD LENGTH=827
Length=827
Score = 760 bits (411), Expect = 0.0
Identities = 522/572 (91%), Gaps = 22/572 (4%)
Strand=Plus/Minus
Query 160 TATACACC-AAAAACACAAGACAATCCAC-AAGAA-GATAGATCATCAAAGAGCTCTTGG 216
|||||||| |||||||||||| || |||| || || | ||||||||||||||||||||||
Sbjct 570 TATACACCAAAAAACACAAGAGAACCCACGAA-AACG-TAGATCATCAAAGAGCTCTTGG 513
Query 217 AGACTCAATCTACGAAGGTTaaaaaaaTTGTTAGAGAAGCCTCATTTCATGAGTTTACTC 276
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 512 AGATTCAATCTACGAAGGTTAAATAAATTGTTAGAGAAGCCTCATTTCATGAGTTTACTC 453
Query 277 GCTTCCCTGCTGGGTCCTTCGCTTTT-CTTCTAATTCACATTTTAATACCAAC-AGAATC 334
|||||||||||||||||||||||||| ||||||| ||||||| | ||| | || |||||
Sbjct 452 GCTTCCCTGCTGGGTCCTTCGCTTTTGCTTCTAA-TCACATTCTCATATC-ACAAGAATT 395
Query 335 TAATCGAAAACTAAATCCATAAGGGATGAAAAACCGAAATCTGGAATT-AAAACCATAGA 393
||||||||||| ||||||||||||||||||||||||||||| |||||| |||| || |||
Sbjct 394 TAATCGAAAACCAAATCCATAAGGGATGAAAAACCGAAATCCGGAATTGAAAA-CACAGA 336
Query 394 TCTCGGATAAATCCACCAATCTCCGATT-TGAATTTCCGAAGGTAAACTTGGCTTGAATA 452
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 335 TCTCGGATAAATCCACCAATCTCCGATTATGAATTTCCGAAGGTAAACTTGGCTTGAATA 276
Query 453 CGCATTGATTAAAGCGTTTCACCCATAGGTCCTTCGTTACGTAATTTCTAAATATGCGAT 512
|||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| |
Sbjct 275 CGCATTGATTAAAGCGTTTCACCCATAGGTCCTTCGTTGCCTAATTTCTAAACATGCTAC 216
Query 513 AACGAATTCGATGCTCAGCGAATACGAACCATAATAAAATCGGACATCAACTCGTGAGAC 572
||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 215 AACGAATACGATGCTCAGCGAATACGAACCATAATATTATCGGACATCAACTCGCGAGAC 156
Query 573 GAGATTCGCCCCACGATCTGTTATATTTTCCGATATTAACTCTTCATCGCATCACTCGAT 632
|||||| | ||||||||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 155 GAGATTTGTCCCACGATCTGTT-TATTT-CCGATATTAACTCTTCATCGCATCGCTCGAT 98
Query 633 AATCAAAGATA---A-AAAATACAAGACGAATTTGAAAGCTAAGTAAAATCGCAGTAAA- 687
||||||||||| | |||| | || ||| |||||||||||||||||| | || | |||
Sbjct 97 AATCAAAGATATTTATAAAAAA-AA-ACGTATTTGAAAGCTAAGTAAAGTTGCCG-AAAC 41
Query 688 GGCGAGGAAGAAGATGAGCTATAAACCCTAGA 719
||||||||||||||||||||||||||||||||
Sbjct 40 GGCGAGGAAGAAGATGAGCTATAAACCCTAGA 9
Score = 230 bits (124), Expect = 2e-59
Identities = 142/151 (94%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 9 AATAAAAAGAATTGTGGGGAAGATGATTGTTGAGCTATTCAATTAACAATGAATCACAAC 68
||| ||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 758 AATCAAACGAATTGTGGGGAAGATGATTGTTGAGCTATTCAATTGACATTGAATCACAAC 699
Query 69 TGCCCATCTGCCCCAAATTGATGTCGCAGAAAAAACTTTCGTACAAAGCGCATTAGATCG 128
||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||
Sbjct 698 TGCCCATCTGCCCCAAATTAATGTCGCAGAGAAATCTTTCGTACAAAGCGCATTACATCG 639
Query 129 CACTAAGCCGATACACACAATCTCTGCTTTT 159
||||||||||||||||||||||||||| |||
Sbjct 638 CACTAAGCCGATACACACAATCTCTGCATTT 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34862498018
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5