BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483765 Length=719 Score E Sequences producing significant alignments: (Bits) Value AT2G46192.1 | Symbols: | other RNA | chr2:18973307-18974133 FO... 760 0.0 > AT2G46192.1 | Symbols: | other RNA | chr2:18973307-18974133 FORWARD LENGTH=827 Length=827 Score = 760 bits (411), Expect = 0.0 Identities = 522/572 (91%), Gaps = 22/572 (4%) Strand=Plus/Minus Query 160 TATACACC-AAAAACACAAGACAATCCAC-AAGAA-GATAGATCATCAAAGAGCTCTTGG 216 |||||||| |||||||||||| || |||| || || | |||||||||||||||||||||| Sbjct 570 TATACACCAAAAAACACAAGAGAACCCACGAA-AACG-TAGATCATCAAAGAGCTCTTGG 513 Query 217 AGACTCAATCTACGAAGGTTaaaaaaaTTGTTAGAGAAGCCTCATTTCATGAGTTTACTC 276 ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 512 AGATTCAATCTACGAAGGTTAAATAAATTGTTAGAGAAGCCTCATTTCATGAGTTTACTC 453 Query 277 GCTTCCCTGCTGGGTCCTTCGCTTTT-CTTCTAATTCACATTTTAATACCAAC-AGAATC 334 |||||||||||||||||||||||||| ||||||| ||||||| | ||| | || ||||| Sbjct 452 GCTTCCCTGCTGGGTCCTTCGCTTTTGCTTCTAA-TCACATTCTCATATC-ACAAGAATT 395 Query 335 TAATCGAAAACTAAATCCATAAGGGATGAAAAACCGAAATCTGGAATT-AAAACCATAGA 393 ||||||||||| ||||||||||||||||||||||||||||| |||||| |||| || ||| Sbjct 394 TAATCGAAAACCAAATCCATAAGGGATGAAAAACCGAAATCCGGAATTGAAAA-CACAGA 336 Query 394 TCTCGGATAAATCCACCAATCTCCGATT-TGAATTTCCGAAGGTAAACTTGGCTTGAATA 452 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 335 TCTCGGATAAATCCACCAATCTCCGATTATGAATTTCCGAAGGTAAACTTGGCTTGAATA 276 Query 453 CGCATTGATTAAAGCGTTTCACCCATAGGTCCTTCGTTACGTAATTTCTAAATATGCGAT 512 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| | Sbjct 275 CGCATTGATTAAAGCGTTTCACCCATAGGTCCTTCGTTGCCTAATTTCTAAACATGCTAC 216 Query 513 AACGAATTCGATGCTCAGCGAATACGAACCATAATAAAATCGGACATCAACTCGTGAGAC 572 ||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 215 AACGAATACGATGCTCAGCGAATACGAACCATAATATTATCGGACATCAACTCGCGAGAC 156 Query 573 GAGATTCGCCCCACGATCTGTTATATTTTCCGATATTAACTCTTCATCGCATCACTCGAT 632 |||||| | ||||||||||||| ||||| |||||||||||||||||||||||| |||||| Sbjct 155 GAGATTTGTCCCACGATCTGTT-TATTT-CCGATATTAACTCTTCATCGCATCGCTCGAT 98 Query 633 AATCAAAGATA---A-AAAATACAAGACGAATTTGAAAGCTAAGTAAAATCGCAGTAAA- 687 ||||||||||| | |||| | || ||| |||||||||||||||||| | || | ||| Sbjct 97 AATCAAAGATATTTATAAAAAA-AA-ACGTATTTGAAAGCTAAGTAAAGTTGCCG-AAAC 41 Query 688 GGCGAGGAAGAAGATGAGCTATAAACCCTAGA 719 |||||||||||||||||||||||||||||||| Sbjct 40 GGCGAGGAAGAAGATGAGCTATAAACCCTAGA 9 Score = 230 bits (124), Expect = 2e-59 Identities = 142/151 (94%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 9 AATAAAAAGAATTGTGGGGAAGATGATTGTTGAGCTATTCAATTAACAATGAATCACAAC 68 ||| ||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 758 AATCAAACGAATTGTGGGGAAGATGATTGTTGAGCTATTCAATTGACATTGAATCACAAC 699 Query 69 TGCCCATCTGCCCCAAATTGATGTCGCAGAAAAAACTTTCGTACAAAGCGCATTAGATCG 128 ||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| |||| Sbjct 698 TGCCCATCTGCCCCAAATTAATGTCGCAGAGAAATCTTTCGTACAAAGCGCATTACATCG 639 Query 129 CACTAAGCCGATACACACAATCTCTGCTTTT 159 ||||||||||||||||||||||||||| ||| Sbjct 638 CACTAAGCCGATACACACAATCTCTGCATTT 608 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34862498018 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5