BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483767
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46200.1 | Symbols: | unknown protein; Has 2968 Blast hits ... 1923 0.0
> AT2G46200.1 | Symbols: | unknown protein; Has 2968 Blast hits
to 2381 proteins in 310 species: Archae - 16; Bacteria - 188;
Metazoa - 1070; Fungi - 227; Plants - 145; Viruses - 4;
Other Eukaryotes - 1318 (source: NCBI BLink). | chr2:18974662-18976871
REVERSE LENGTH=1460
Length=1460
Score = 1923 bits (1041), Expect = 0.0
Identities = 1270/1377 (92%), Gaps = 29/1377 (2%)
Strand=Plus/Plus
Query 1 GCTTTTGCCGGCGTCGGATCTCGCCGATGTCTCCTCCGCAGAAATTATCT-TC-GTTGCT 58
||||||||||||||||||||||| | | |||||||||| ||||||||||| || |||| |
Sbjct 1 GCTTTTGCCGGCGTCGGATCTCGGCAAAGTCTCCTCCGTAGAAATTATCTATCTGTTG-T 59
Query 59 CTCACATTAGGTTG-TGGAGCTTTAGGGTTTTCTGGTAAGAGACTCTCCGA-GATGAATC 116
|| | | | | |||| ||| ||||||||||||||||| ||||| | ||||||||
Sbjct 60 GGAAC-TGAAATCGCTGGA-TTTTGGGGTTTTCTGGTAAGAGGGTCTCC-AGGATGAATC 116
Query 117 CGGCGAATTTTCAGCCTCCAAATCCTCCGTTCCACTGGGCTCCGATGTTACCTCCCGACC 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 117 CGGCGAATTTTCAGCCTCCAAATCCTCCGTTCCACTGGGCTCCGATGTTACCTCCAGACC 176
Query 177 CTCCTCGTTGTGGTATGTTTTGGACTCCAAAGAACATAACCGATCAGCTTAAACAACTCC 236
| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 177 CGCCTCGTTGTGGTATGTTTTGGAATACAAAGAACATAACCGATCAGCTTAAACAACTTC 236
Query 237 AAGATACGCTTAACCTGGCTAAATCAATGGAGAAGGAACTGGAAGCATTGAAGATGATCA 296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 237 AAGATACGCTTAACCTGGCTAAATCAATGGAGAAAGAACTGGAAGCATTGAAGATGATCA 296
Query 297 AATATGCTAAAGGTTCAGTGGAAGTTGTAGAACAAGGTTCAGGAGTAGAGTGTTTGAGAT 356
|| | || |||||||| |||||| || || ||||| ||| |||||||| | | ||
Sbjct 297 AAGACGCCAAAGGTTCTGTGGAAAATGCAGTACAAGATTCGGGAGTAGA--G--T---AT 349
Query 357 ATCTAGAAGCTATG-AAGATGGATTTGGGACAGCAGGAGATGCTTTCAGTGGAAGCTGCT 415
| |||| |||| | ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 350 -T-TAGAGGCTA-GAAAGATGGATTTGGGACAGCAGGAAATGCTTTCAGTGGATGCTGCT 406
Query 416 AACTCCTTGATGTCTACCTTGAGATCACAGCTTGAGCCTTTTAGGTTTGTTGTTGATGAG 475
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 407 AACTCCTTGATGTCTACCTTGAGAGCACAGCTTGAGCCTTTTAGGTTCGTTGTTGATGAG 466
Query 476 AATAGTCCATGGGAAGAGAAATCTGCAGCAGTAAGATTGACTTGCAAAATGAAGAAATCG 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 AATAGTCCATGGGAAGAGAAATCTGCAGCAGTAAGATTGACTTGCAAAATGAAGAAATC- 525
Query 536 AA-AAGGAACAAACTGTGGAAGAAGCGAAAGAGACGGTGTGTTGCAGAGATGCGTGCTAA 594
|| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 526 AATAAGGAACAAACTGTGGAAGAAACGAAAGAGACGGTGTGCTGCAGAGATGCGTGCTAA 585
Query 595 GGAGCCTGAGAGATTTGAACAAGCTGATCGAGAGGCCGATGAATGGAGGGAAAAGGAAAT 654
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 586 GGAGCCTGAAAGATTTGAACAAGCTGATCGAGAGGCAGATGAATGGAGGGAAAAGGAAAT 645
Query 655 GGCCAAGGACATGGCGAATAGAAAGGTCGACGAGATGAAGGCTATTGAGAAGATCAAGGC 714
||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 646 GGCCAAGGACATGGCAAATAGAAAGGTTGATGAGATGAAGGCAATTGAGAAGATCAAGGC 705
Query 715 AAAACGTGAGCGAAGGAGACTAGAACCCGAGCTTGAACTAGCTCTGATTGTTGAGGAAAT 774
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 AAAACGTGAGCGAAAGAGACTAGAACCCGAGCTTGAACTAGCTCTGATTGTTGAGGAAAT 765
Query 775 GCAAGAGTTACGTTCCCTAAGAATCGAAAAACTAAAGAAGCAAGGACATTTCCTTCCTGA 834
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 766 GCAAGAGTTACGTTCCCTAAGAATTGAAAAACTAAAGAAGCAAGGACATTTCCTTCCCGA 825
Query 835 AGAAGATGATAAGTTTTTCGAAAGTGTTCGTGCTGCGGTGGAGCAAGAGGAAAACCAAGC 894
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 826 AGAAGATGACAAGTTTTTCGAGAGTGTTCGTGCTGCAGTGGAGCAAGAGGAAAACCAAGC 885
Query 895 TCAGTCCCTAATCAACTCAGAGACCGAAGAGAATGTCAATGCCTCTGAGGAGGACACTAC 954
|||||||||||||||| |||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 886 TCAGTCCCTAATCAACACAGAGACCGAAGAGCATGTCATTGCCTCTGAGGAGAACACTAC 945
Query 955 TCTCAATGCCAGTAACAAAACCAACAAAGACACAGATAAAGATAGCAATACTATTGCAGC 1014
||||| | ||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 946 TCTCACTACCAGTAACAAAACCAACAACGACACAGATAAAGATAGCAATACTAATGCAGC 1005
Query 1015 TTCTTGTGAAAAGACGATGAAAGCTCCTGAAAATGGGTGCGACAATATATCGAATTTACC 1074
||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1006 TTCTTGTGAAAGGACTATGAAAGCTCCTGACAATGGTTGCGACAATATATCGAATTTACC 1065
Query 1075 AGTCGAGTTCTATCACTACTACTACGGAAGCAATTTCGACATGGGTAAACTTATTGAGAT 1134
||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||
Sbjct 1066 AGTCGAGGTCTATCACTACTACTACGGAAGTAATATCGACATGGGTAGACTTATTGAGAT 1125
Query 1135 CAGAAGAGAATGGGATGCATATCTGAGTCCCGGAGGAAGCCGGATTCCTGGACACTGGGT 1194
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1126 CAGAAGAGAATGGGATGCATATCTGAGTGCCGGAGGAAGCCGGATTCCTGGACACTGGGT 1185
Query 1195 CCAGCCGTCGCCACCAGCTAATGAGATTTGGGCTTCTTGTCTTGTTGATACTCCCAAGAG 1254
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1186 CCAGCCGTCGCCACCAGCTAATGAGATTTGGGCTTCTTGTCTTGTTAATACTCCCAAAAG 1245
Query 1255 AGATCTTAGTTAGTTGCTGTTGGGAATT-TAGGATACAGGTTTCA-GCCAGCACC----A 1308
|||||||||||||| |||||| ||| || |||||||| ||||||| || | |||| |
Sbjct 1246 AGATCTTAGTTAGTCGCTGTTAGGA-TTCTAGGATACTGGTTTCATGCAA-CACCCTTTA 1303
Query 1309 CTGAAGATCATGTGATTTGGTCATTTGTCTCTGTTTTGAAACAGAAACAGTTCACAA 1365
|| ||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1304 CTCAAGATTATGCGATTTGGTCATTTGCCTCTGTTTTGAAACAGAAACAGATCACAA 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67268730300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5