BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483768
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46210.1 | Symbols: | Fatty acid/sphingolipid desaturase | ... 2335 0.0
AT3G61580.1 | Symbols: | Fatty acid/sphingolipid desaturase | ... 1042 0.0
> AT2G46210.1 | Symbols: | Fatty acid/sphingolipid desaturase
| chr2:18977344-18979001 FORWARD LENGTH=1658
Length=1658
Score = 2335 bits (1264), Expect = 0.0
Identities = 1387/1447 (96%), Gaps = 5/1447 (0%)
Strand=Plus/Plus
Query 134 TCTCTTTCTCTTGTTCAACAATGGCGGATCAAACGAAGAAGAGATACGTTACAAGCGAGG 193
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCTCTTTCTCTGGTTCATCAATGGCGGATCAAACGAAGAAGAGATACGTTACAAGCGAGG 238
Query 194 ATTTGAAAAAACACAACAAACCTGGAGATTTATGGATATCGATTCAAGGTAAAGTTTGCG 253
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 239 ATTTGAAAAAACACAACAAACCTGGAGATTTATGGATTTCGATTCAAGGTAAAGTTTACG 298
Query 254 ACGTTTCCGATTGGGTTAAATCTCATCCCGGAGGCGAAGCAGCGATTCTCAATCTCGCCG 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ACGTTTCCGATTGGGTTAAATCTCATCCCGGAGGCGAAGCAGCGATTCTCAATCTCGCCG 358
Query 314 GCCAAGACGTCACCGACGCGTTCATCGCTTACCATCCCGGAACCGCATGGCACCACCTCG 373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 359 GCCAAGACGTCACCGACGCGTTCATCGCTTACCATCCCGGAACCGCATGGCACCACTTAG 418
Query 374 AAAAGCTTCACAATGGCTATCACGTGAGAGACTTCCACGTGTCTGACGTGTCACGTGATT 433
|||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |
Sbjct 419 AAAAGCTTCACAATGGCTATCACGTGAGAGACCACCACGTGTCAGACGTCTCACGTGACT 478
Query 434 ACCGCCGATTAGCCGCCGAGTTCTCCAAACGCGGCCTCTTCGACAAAAAAGGTCACGTGA 493
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACCGTCGTTTAGCCGCCGAGTTCTCCAAACGCGGCCTCTTCGACAAAAAAGGTCACGTGA 538
Query 494 CTCTCTACACGCTCACGTGCGTCGGTGTAATGCTCGCGGCGGTTCTCTACGGCGTTTTGG 553
|||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 539 CTCTTTACACACTCACGTGCGTCGGCGTCATGCTCGCGGCGGTTCTCTACGGCGTTTTGG 598
Query 554 CGTGTACCAGCGTCTGGGCTCACCTCATCTCCGCCGTCTTACTCGGCCTCCTCTGGATCC 613
||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 599 CGTGTACCAGCATCTGGGCTCACCTCATCTCCGCCGTTTTACTCGGTCTCCTCTGGATCC 658
Query 614 AGAGCGCTTACGTCGGCCACGATTCCGGTCACTACACGGTGACGTCGACCAAACCGTGTA 673
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 AAAGCGCTTACGTCGGCCACGATTCCGGTCACTACACGGTGACGTCAACCAAACCGTGTA 718
Query 674 ATAAACTAATCCAGCTTCTCTCCGGTAACTGTCTCACCGGAATCTCAATCGCGTGGTGGA 733
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 719 ACAAACTAATCCAGCTTCTCTCCGGTAACTGTCTCACCGGCATCTCAATCGCGTGGTGGA 778
Query 734 AATGGACGCACAACGCTCACCACATCGCTTGTAACAGCCTTGATCACGATCCAGATCTAC 793
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 779 AATGGACGCACAACGCTCACCACATCGCTTGTAACAGCCTTGACCACGATCCGGATCTAC 838
Query 794 AACACATCCCGATCTTCGCCGTCTCAACCAAATTCTTCAATTCGATGACGTCACGTTTCT 853
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 839 AACACATCCCGATCTTCGCCGTCTCTACAAAATTCTTCAATTCGATGACGTCACGTTTCT 898
Query 854 ATGGCAGGAAATTAACATTCGATCCTCTAGCTCGATTCTTAATCAGCTACCAACACTGGA 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATGGCAGGAAATTAACATTCGATCCTCTAGCTCGATTCTTAATCAGCTACCAACACTGGA 958
Query 914 CATTTTACCCAGTAATGTGCGTCGGAAGAATCAATCTCTTTATCCAAACATTCCTATTGC 973
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 959 CATTTTACCCAGTAATGTGCGTCGGAAGAATCAACCTCTTCATCCAAACATTCCTATTGC 1018
Query 974 TATTCTCGAAACGCCACGTCCCAGATCGAGCCTTAAACATCGCCGGAATTTTAGTTTTCT 1033
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1019 TATTCTCGAAACGCCACGTCCCAGATCGGGCCTTGAACATCGCCGGAATTTTAGTTTTCT 1078
Query 1034 GGACATGGTTCCCGCTCTTAGTCTCGTTTCTTCC-AAGTTGGTCA-GAGAGATTCATCTT 1091
||||||||||||| |||||||||||||| ||||| || |||| || ||||||||||||||
Sbjct 1079 GGACATGGTTCCCTCTCTTAGTCTCGTTCCTTCCGAA-TTGG-CAAGAGAGATTCATCTT 1136
Query 1092 CGTCTTCGTTAGCTTCGCCGTCACTGCGATTCAACACGTTCAGTTCTGTTTAAACCATTT 1151
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1137 CGTCTTCGTGAGCTTCGCCGTCACGGCGATTCAACATGTTCAGTTCTGTTTAAACCATTT 1196
Query 1152 CGCAGCAGATGTTTATACCGGTCCACCTAACGGAAACGATTGGTTCGAGAAACAAACCGC 1211
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1197 CGCAGCAGATGTGTATACCGGTCCACCAAACGGAAACGATTGGTTTGAGAAACAAACCGC 1256
Query 1212 CGGTACGCTTGATATATCGTGTAGATCGTATATGGATTGGTTCTTTGGTGGATTGCAGTT 1271
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1257 CGGTACGCTTGATATATCGTGTAGATCGTTTATGGATTGGTTCTTTGGTGGATTGCAGTT 1316
Query 1272 TCAGTTAGAGCATCATTTATTTCCTCGGCTTCCTCGTTGTCATCTCCGGACAGTATCTCC 1331
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1317 TCAGTTAGAGCATCATTTGTTTCCTCGGCTTCCTCGTTGTCATCTCCGGACAGTATCGCC 1376
Query 1332 GGTGGTTAAGGAGCTTTGTAAGAAGCATAATCTTCCTTATAGGAGTCTTTCGTGGTGGGA 1391
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1377 GGTGGTTAAGGAGCTTTGTAAGAAGCATAATCTACCGTATAGGAGTCTTTCGTGGTGGGA 1436
Query 1392 GGCTAATGTGTGGACGATTAGGACTTTGAAGAATGCGGCGATTCAAGCTAGAGATGCGAC 1451
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1437 AGCTAATGTGTGGACGATTAGGACTTTGAAGAACGCGGCGATTCAAGCTAGAGATGCGAC 1496
Query 1452 TAATCCTGTGTTGAAGAACTTGCTTTGGGAAGCTGTGAATACTCATGGCTAAAAAGGTGT 1511
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1497 TAATCCTGTGTTGAAGAACTTGCTTTGGGAAGCTGTGAACACGCATGGCTAAAAAGGTGT 1556
Query 1512 TTCGTTTGTGGACTACTTCTTAATTAGTTTGAATCTGTTTTAGGTGTAACTCTACCATGA 1571
||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||| |||
Sbjct 1557 TTCGTTTGTCGAGTACTTTTTAATTAGATTGAA-CTGTTTTAGGTGTAACTCTACCGTGA 1615
Query 1572 TCAAAAA 1578
| |||||
Sbjct 1616 TAAAAAA 1622
Score = 195 bits (105), Expect = 2e-48
Identities = 127/137 (93%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 1 ATCGATTCCAAAACAGTAAACAAAC-aaaaa-a-a-aTACAAATATAAAGAAGAAAAGGC 56
||||||||||||||||||||||||| ||||| | | | |||||||||| ||||| |||||
Sbjct 1 ATCGATTCCAAAACAGTAAACAAACAAAAAACACACACACAAATATAAGGAAGAGAAGGC 60
Query 57 GTAGAATCGATTCAAAATCTGTGAGTTACGAATCCATAGAGAGAAAGGTTTTGCATTTGC 116
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GTAGAATCGATTCAGAATCTGTGAATTACGAATCCATAGAGAGAAAGGTTTTGCATTTGC 120
Query 117 AACCTTTCTCAATTTGG 133
|||||||||||| ||||
Sbjct 121 AACCTTTCTCAAATTGG 137
> AT3G61580.1 | Symbols: | Fatty acid/sphingolipid desaturase
| chr3:22786047-22787972 FORWARD LENGTH=1926
Length=1926
Score = 1042 bits (564), Expect = 0.0
Identities = 1117/1380 (81%), Gaps = 54/1380 (4%)
Strand=Plus/Plus
Query 152 CAATGGCGGATCAAACGAAG-AAGAGATACGTTAC-AAGCGAGGAT-TTGAAAAAACACA 208
|||||||||| | ||| || || || ||| |||| || ||| ||| || ||||||||||
Sbjct 205 CAATGGCGGAAGAGACGGAGAAAAAG-TACATTACGAA-CGAAGATCTT-AAAAAACACA 261
Query 209 ACAAACCTGGAGATTTATGGATATCGATTCAAGGTAAAGTTTGCGACGTTTCCGATTGGG 268
||||| |||||||| ||||||| |||||||||| || || | | |||| |||||||||
Sbjct 262 ACAAATCTGGAGATCTATGGATCGCGATTCAAGGCAAGGTCTACAACGTCTCCGATTGGA 321
Query 269 TTAAATCTCATCCCGGAGGCGA-AGCAGCGATTCTCAATCTCGCCGGCCAAGACGTCACC 327
||||| |||||||||||||||| | | | |||||||||||||| || ||||||||||||
Sbjct 322 TTAAAACTCATCCCGGAGGCGACA-CGGTGATTCTCAATCTCGTTGGTCAAGACGTCACC 380
Query 328 GACGCGTTCATCGC-TTACCATCCCGGAACCGCATGGCACCACCTCGA--AAAGCTTCAC 384
|| || |||||||| || |||||||||||||| |||||||| ||||| | ||||||
Sbjct 381 GATGCTTTCATCGCATT-TCATCCCGGAACCGCTTGGCACCATCTCGACCATCTCTTCAC 439
Query 385 AATGGCTATCACGTGAGAGACTTCCACGTGTCTGACGTGTCACGTGATTACCGCCGAT-T 443
|| || ||| | ||||| ||||| || || || || ||||| |||||||| || | |
Sbjct 440 --CGGTTACCACATCAGAGATTTCCAAGTCTCCGAAGTCTCACGCGATTACCGTCG-TAT 496
Query 444 AGCCGCCGAGTTCTC-CAAACGCGGCCTCTTCGACAAA-AAAGGTCACGTGACTCTCTAC 501
|| |||||||| || |||| ||| |||||||| ||| ||||||||||| |||||||||
Sbjct 497 GGCTGCCGAGTT-TCGTAAACTCGGTCTCTTCGA-AAACAAAGGTCACGTTACTCTCTAC 554
Query 502 ACGCTCA-CGTGCGTCGGTGTAATGCT-CGCGGCGGTTCTCTACGGCGTTTTGGCGTGTA 559
|| || | | | ||||| | ||| | | ||| ||||||||||| |||||||| ||||
Sbjct 555 ACTCT-AGCCTTCGTCGCCGCCATGTTCCTCGG-AGTTCTCTACGGTGTTTTGGCTTGTA 612
Query 560 CCAGCGTCTGGGCTCACCTCATCTCCGCCG-TCTTACTCGGCCTCCTCTGGATCCAGAGC 618
|| ||||| ||||||| ||| |||||| ||| ||||| ||||||||||||||||||
Sbjct 613 CCTCCGTCTTCGCTCACCAAATCGCCGCCGCGCTT-CTCGGTCTCCTCTGGATCCAGAGC 671
Query 619 GCTTACGTCGGCCACGATTCCGGTCACTACACGGTGACGTCGACCAAACCGTGTAATAAA 678
|||||| | || |||||||| ||||| ||| | | ||||| |||| | | ||| | |
Sbjct 672 GCTTACATAGGTCACGATTCTGGTCATTACGTTATCATGTCGAACAAATCTTATAACAGA 731
Query 679 CTAATC-CAGCTTCTCTCCGGTAACTGTCTCACCGGAATCTCAATCGCGTGGTGGAAATG 737
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 -TTCGCTCAGCTTCTCTCCGGTAACTGTCTCACCGGAATCTCAATCGCGTGGTGGAAATG 790
Query 738 GACGCACAACGCTCACCA-CATCGCTTGTAACAGCCTTGATCACGATCCAGATCTACAAC 796
||| ||||| ||||| || | | |||||||||||||| ||| ||||||||||||||||||
Sbjct 791 GACTCACAATGCTCATCATC-TAGCTTGTAACAGCCTCGATTACGATCCAGATCTACAAC 849
Query 797 ACATCCC-GATCTTCGCCGTCTCAACCAAATTCTTCAATTCGAT-GACGTC-ACGTTTCT 853
||||||| | ||||||||||||| |||||||||||| || || ||| || | | ||||
Sbjct 850 ACATCCCTG-TCTTCGCCGTCTCCACCAAATTCTTCTCCTC-ATTGACCTCGA-GATTCT 906
Query 854 ATGG-CAGGAAATTAACATTCGATCCTCTAGCTCGATTCTTAATCAGCTACCAACACTGG 912
| | | ||||| | || || ||||| | || |||||||| ||||||| |||||||
Sbjct 907 ACGATC-GGAAACTCACGTTTGATCCAGTCGCGAGATTCTTAGTCAGCTATCAACACTTT 965
Query 913 ACATT-TTACCCAGTAATGTGCGTCGGAAGAATCAATCTCTTTATCCAAACATTCCTATT 971
|| || ||| ||||| |||||| | ||||||||||||||||| || ||||| || || ||
Sbjct 966 AC-TTATTATCCAGTTATGTGCTTTGGAAGAATCAATCTCTTCATTCAAACGTTTCTCTT 1024
Query 972 GCTATTCTCGAAACGCCACGTCCCAGATCGAGCCTTAAACATCGCCGGAATTTTAGTTTT 1031
||| ||||| ||||| | || |||||||| || |||||| |||||||||| ||||| ||
Sbjct 1025 GCTCTTCTCCAAACGTGAAGTACCAGATCGTGCTTTAAACTTCGCCGGAATCTTAGTCTT 1084
Query 1032 CTGGACATGGTTCCCGCTCTTAGTCTCGTTTCTTCCAAGTTGGTCAGAGAGATTCATCTT 1091
|||||| |||||||| ||||||||||| | ||| |||| ||| | ||||||||| ||||
Sbjct 1085 CTGGACTTGGTTCCCACTCTTAGTCTCATGTCTACCAAACTGGCCTGAGAGATTCTTCTT 1144
Query 1092 CGTCTTCGTTAGCTTCGCCGTCACTGCGATTCAACACGTTCAGTTCT-GTTTAAACCATT 1150
||||||| |||||| ||||||| ||| |||||||| |||| ||| | |||| |||||
Sbjct 1145 CGTCTTCACAAGCTTCACCGTCACGGCGCTTCAACACATTCAATTCACGCTTAA-CCATT 1203
Query 1151 TCGCAGCAGATGTTTATACCGGTCCACCTAACGGAAACGATTGGTTCGAGAAACAAACCG 1210
|||| || ||||| || |||||||| | ||| | ||| ||||||||||| ||| | |
Sbjct 1204 TCGCTGCTGATGTCTACGTTGGTCCACCCACCGGTAGCGACTGGTTCGAGAAGCAAGCGG 1263
Query 1211 CCGGTACGCTTGATATATCGTGTAGATCGTATATGGATTGGTTCTTTGGTGGATTGCAGT 1270
| || || | ||||| || |||||||| || ||||||||||||||||||||||| ||||
Sbjct 1264 CGGGAACAATCGATATCTCTTGTAGATCATACATGGATTGGTTCTTTGGTGGATTACAGT 1323
Query 1271 TTCAG-TTAGAGCATCATTTATTTCCTCGGCTT-CCTCGTTGTCATCTCCGGACAGTATC 1328
||||| || ||||||||||| || ||||| ||| |||||||| |||||||||| ||| ||
Sbjct 1324 TTCAGCTT-GAGCATCATTTGTTCCCTCG-CTTACCTCGTTGCCATCTCCGGAAAGTTTC 1381
Query 1329 TCCGGTGGTT-AAGGAGCTTTGTAAGAAGCATAATCTTCCTTATAGGAGTCTTTCGTGGT 1387
|||||||||| ||| ||||||| ||||||||||||||||| ||||||||| | |||||||
Sbjct 1382 TCCGGTGGTTCAAG-AGCTTTGCAAGAAGCATAATCTTCCGTATAGGAGTATGTCGTGGT 1440
Query 1388 GGGAGGCTAATGTGTGGACGATTAGGACTTTGAAGA-ATGCGGCG-ATTCAAGCTAGAGA 1445
|| || ||||||| ||| |||| |||||||||| | || || || |||||||||||
Sbjct 1441 TTGAAGCAAATGTGTTGACCATTAACACTTTGAAGACA-GCAGCTTAT-CAAGCTAGAGA 1498
Query 1446 TGCGACTAATCCTGTG-TTGAAGAACTTGCTTTGGGAAGCTGTGAATACTCATGGCTAAA 1504
| | ||||||| ||| || ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1499 CGTGGCTAATCCGGTGGTT-AAGAACTTGGTTTGGGAAGCTTTGAATACTCATGGCTAAA 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78764655105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5