BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483769
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46220.1 | Symbols: | Uncharacterized conserved protein (DU... 1314 0.0
> AT2G46220.1 | Symbols: | Uncharacterized conserved protein (DUF2358)
| chr2:18979471-18980770 FORWARD LENGTH=1123
Length=1123
Score = 1314 bits (711), Expect = 0.0
Identities = 855/921 (93%), Gaps = 24/921 (3%)
Strand=Plus/Plus
Query 1 AGAATCGTTATCCATGCGGAC-TGAAAGATTATCCTTA-GAGAATTTTCCTGACCTATCC 58
||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||||
Sbjct 5 AGAATCGTTATCCATGCGGACTTGAAAAATTATCCTTAGGAGATTTTTCCTGACCTATCC 64
Query 59 TCGCGTCGCAACCTTCTCGTCTTCTCTCTCAATCCA-CA-AAGCC-A-GCATATTCCTTC 114
||||||||| |||||| |||||||||||||||||| || | || | ||| || ||||
Sbjct 65 TCGCGTCGC-GCCTTCTTGTCTTCTCTCTCAATCCAGCATATTCCTACGCAAATCCCTTA 123
Query 115 TCGTTTTCATGTTTGCT-CTAGTTTAAATCTTCAATCTCCTTCCCGGtttttttCATCCT 173
||||||||||||||| | || |||||||||||||||||||| ||||| | ||||||||||
Sbjct 124 TCGTTTTCATGTTTG-TCCTGGTTTAAATCTTCAATCTCCTACCCGG-TCTTTTCATCCT 181
Query 174 CCGATGGCATTCCTTGTTCGTTCGCCGGAAATTCCCACCTTCTCGGCGAGAATCTTCTCC 233
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||
Sbjct 182 CCGATGGCATTCCTTGTTCGTTCGCCGGAGATACCCACCGTCTCGGCGAGAATCTTCTCC 241
Query 234 GATTCGAATTCGAGTGTTATTAGTCATGCGTTTATGAGGAGGAAGGTTACGGTTTCAGTG 293
||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| | |
Sbjct 242 GATGCGAATTCGAGTGTTATTAGTCATGTGTTTATGAGGAGGAAGGCTACGGTTTCGGCG 301
Query 294 ATTGACGCAAAAGATTTGTCTGGTGTTAAGAATCCGAAATCGAGATTGTAC-GGAAAATT 352
|||||||| | ||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 302 ATTGACGCCAGAGATTTGCCTGGTGTTAAGAATCCGAAATCGAGATTGTACTGG-CAATT 360
Query 353 CTCAGCTCCGGTGAAAGAAGACTGCAAGATTAGC-------A-G-AG-AG--GAAGAAGA 400
||||||||||||||||||||||| |||||||||| | | || || ||||||||
Sbjct 361 CTCAGCTCCGGTGAAAGAAGACTACAAGATTAGCAGAGAGGAGGAAGAAGAAGAAGAAGA 420
Query 401 AGATAAGCAGAGTTATTACGTGAATATGGGTCACGCCGTTCGTAGTATCAGAGAAGAGTT 460
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGATAAGCAGAGTTACTACGTGAATATGGGTCACGCCGTTCGTAGTATCAGAGAAGAGTT 480
Query 461 TCCTTTGTTGTTCTACAAAGAGCCCAATTTTGACATTTACAGGGATGATATTGTTTTCAG 520
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 TCCTTTGTTGTTCTACAAAGAGCTTAATTTTGACATTTACAGGGATGATATTGTTTTCAA 540
Query 521 AGACCCTATGAACACATTCATAGGAATTGATAACTACAAATCCATATTTTGGGCCTTACG 580
||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 541 AGACCCTATGAACACTTTCATGGGAATTGATAACTACAAATCCATATTTGGGGCCTTACG 600
Query 581 TTTCCATGGAAGGATCTTCTTCAGAGCACTCTGTGTTGACATTGTTAGTGTTTGGCAACC 640
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 601 TTTCCATGGAAGGATCTTCTTCAGAGCACTATGTGTGGACATTGTTAGTGTTTGGCAACC 660
Query 641 TACAGAGAACACTCTGATGATACGATGGACTGTTCATGGAATTCCTCGTGGTCCTTGGGA 700
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 CACAGAGAACACTCTGATGATACGATGGACTGTTCATGGAATTCCTCGTGGTCCGTGGGA 720
Query 701 GACTCGTGGTCGATTCGATGGTACTTCTGAGTATAAATTCGATAAGAGTGGGAAGATTTA 760
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 721 GACTCGTGGTCGATTCGATGGTACTTCTGAGTATAAATTCGATAAGAATGGCAAGATTTA 780
Query 761 TGAACATAAAGTGGATAACATCGCCATTAATTCGCCTCCAAAGTTTCAAATGCTCACTGT 820
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGAGCATAAAGTCGATAACATAGCCATTAATTCGCCTCCAAAGTTTCAAATGCTCACTGT 840
Query 821 TCAAGAGCTTGTTGAAGCCATTAGCTGCCCTTCTACTCCCAAGCCGACCTACTTTGAGTT 880
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 841 TCAAGAGCTTGTTGAAGCCATTAGCTGCCCTTCGACTCCCAAGCCGACCTACTTTGAGTT 900
Query 881 CGGAGATTGATTCATCATCAT 901
|||||||||||||||||||||
Sbjct 901 CGGAGATTGATTCATCATCAT 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48224781120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5