BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483770
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46225.2 | Symbols: ABIL1 | ABI-1-like 1 | chr2:18981918-189... 1149 0.0
AT2G46230.1 | Symbols: | PIN domain-like family protein | chr2... 99.0 1e-19
> AT2G46225.2 | Symbols: ABIL1 | ABI-1-like 1 | chr2:18981918-18984292
FORWARD LENGTH=1403
Length=1403
Score = 1149 bits (622), Expect = 0.0
Identities = 680/708 (96%), Gaps = 3/708 (0%)
Strand=Plus/Plus
Query 1 AGAGTCCTTTGGATTTGGAATCGCTTCTACTTCACTCTGACCTTCGTCctctctctctct 60
|||||||||||||||||||||||||||||||||||||| |||||| |||| | |||||||
Sbjct 13 AGAGTCCTTTGGATTTGGAATCGCTTCTACTTCACTCTCACCTTCCTCCTAT-TCTCTCT 71
Query 61 ctctttctctGTCAAGTTAGCTTAGCCGTCTCACCAGAAAGCTAGCCTTACCTCACAAGC 120
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 72 CTCTTTCTATGTCAAGTTAGCTTAGCCGTCTCACCAGAAAGCTAACCTTACCTCACAAAC 131
Query 121 ATTGA-T-TGTTACACTAATCTCTCGTATACAGAGCCGTAATTTCAACACACTCTGATCG 178
||||| | |||||||||||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 132 ATTGATTGTGTTACACTAATCTCTTAAATAGAGAGCCGTAATTTCTACACACTCTGATCG 191
Query 179 CTAAATGGAAACGGAGATATCGGGAATGGATAATCCAGCAATGACCTTCGACGAGGTTTC 238
||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 192 CTAGATGGAAACGGAGATATCAGGAATGGATAATCCAGCTATGACCTTGGACGAGGTTTC 251
Query 239 CATGGAACGCAGCAAGAGCTTCGTTAAGGCATTGCAGGAGCTCAAGAACTTGAGGCCACA 298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 252 CATGGAACGCAACAAGAGCTTCGTTAAGGCATTGCAGGAGCTCAAGAACTTGAGGCCTCA 311
Query 299 ACTTTATTCAGCTGCTGATTACTGTGAAAAGTCTTATCTTCATAGCGAGCAAAAGCAAAT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 ACTTTATTCAGCTGCTGATTACTGTGAAAAGTCTTATCTTCATAGCGAGCAAAAGCAAAT 371
Query 359 GGTATTGGACAATTTGAAAGACTACACTGTAAAGGCTCTAGTTAATGCTGTTGATCACCT 418
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 372 GGTATTGGACAATTTGAAAGACTACACTGTGAAGGCTCTAGTTAATGCTGTTGATCACCT 431
Query 419 TGGAACTGTAGCTTCCAAGCTTACTGATCTTTTTGATCAGCAAAATTCAGACATATCAAC 478
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 432 TGGAACTGTAGCTTCCAAGCTTACTGATCTTTTTGATCACCAAAATTCAGACATATCAAC 491
Query 479 TATGGAGTTGAGAGCTTCTTGTGTTAGCCAGCAACTGCTTACATGCCGGACTTATATCGA 538
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 492 TATGGAAATGAGAGCTTCTTGTGTTAGCCAGCAACTGCTTACATGCCGGACATATATCGA 551
Query 539 CAAAGAAGGTCTTAGACAGCAACAGCTATTAGCAGTTATCCCATTGCATCACAAGCATTA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 CAAAGAAGGTCTTAGACAGCAACAGCTATTAGCAGTTATCCCATTGCATCACAAGCATTA 611
Query 599 CATTCTTCCCAATTCAGTTAACAAGCGGGTACACTTTAGTCCTCTTAGACGAACTGACAC 658
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 612 CATTCTTCCCAATTCTGTTAACAAGCGGGTACACTTTAGTCCTCTCAGACGAACTGACAC 671
Query 659 AAGACAGAATCATTACCAAGCTATATCCCGTCTTCAACCTTCAGATGC 706
|||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 672 AAGACAGAATCATTACCAAGCTATATCCCGTCTTCAACCTTCAGGTGC 719
Score = 852 bits (461), Expect = 0.0
Identities = 538/574 (94%), Gaps = 9/574 (2%)
Strand=Plus/Plus
Query 697 CTTCAGATGCTCCTGCATCAAAATCACTCTCCTGGCATTTAGGCTCAGAGACCAAGTCTA 756
||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 804 CTT-AGATGCCCCTGCATCGAAATCACTCTCCTGGCATTTAGGCTCAGAGACCAAGTCTA 862
Query 757 CCCTCAAAGGAACATCCACAGTTGCACCAAGTTCCAAAGATTCAAAAGCTTTCACAAAGA 816
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 863 CCCTCAAAGGAACATCCACAGTTGCACCAAGCTCCAAAGATTCAAAAGCTTTCTCAAAGA 922
Query 817 CATCTGGAGTGTTCCATCTCTTAGGTGATGAAGAAAACATAGTAAACAAGAAGCCTTCGG 876
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 923 CATCTGGAGTGTTCCATCTCTTAGGTGATGATGAAAACATAGCAAACAAGAAGCCTTTGG 982
Query 877 CTGGTTCTCAGGTCTCAGGTGTTCCTGCTGCATCCACTGCCCATAAGGATTTGGAGGTTC 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 CTGGTTCTCAGGTCTCAGGTGTTCCTGCTGCATCCACTGCCCATAAGGATTTGGAGGTTC 1042
Query 937 CCAAACTTCTGACTGCACACAGGTCACTTGACAATAACCCGCGACGAGAGATCATTCAAG 996
| |||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1043 CGAAACTTCTAACTGCACACAGGTCACTTGATAACAACCCGCGACGAGAGATCATTCAAG 1102
Query 997 CTCCTGTCCGGACAAAGAGTGTTCTTTCTGCGTTCTTCGTCAAACAGAAAGCTCCAAAGC 1056
||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||
Sbjct 1103 CTCCTGTCCGGACAAAGAGTGTTCTTTCTGCGTTCTTTGTTAAACAGAAAACTCCAAAGC 1162
Query 1057 TCAAAGCCGGCTACGTCTCGTGAAAACACCAACTCTTTGTACTGATAAGGAA-TGTCAAT 1115
||||||| ||||| ||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 1163 TCAAAGCTGGCTATGTCTCGTGAAAACACCAACTCTTTGTACTGAGAAGGAAATTTCAAT 1222
Query 1116 GTCATACCACGTTTCTTTTATCTTAATAATAATAACAGGTTGATTTTAATGTAATTATCT 1175
||||||||||||||||||| |||| || |||||||| ||||||||| ||||||||||||
Sbjct 1223 CTCATACCACGTTTCTTTTACCTTA-TA-TAATAACATGTTGATTTTCATGTAATTATCT 1280
Query 1176 TAATCACCACATCACATCAACGTACGAAATCCAACAAGACGTGATTTTGGTCTGTCATTA 1235
|||||||||||||| | | ||||||| |||| ||||| |||||||||||| ||||||
Sbjct 1281 TAATCACCACATCA-A-C---GTACGAAGTCCAGTAAGACATGATTTTGGTCTATCATTA 1335
Query 1236 ACAAAACTGTGTAATAGATTAAGAATGTGTTTTT 1269
||||||||||||||||||||||||||||||||||
Sbjct 1336 ACAAAACTGTGTAATAGATTAAGAATGTGTTTTT 1369
> AT2G46230.1 | Symbols: | PIN domain-like family protein | chr2:18984199-18985959
REVERSE LENGTH=960
Length=960
Score = 99.0 bits (53), Expect = 1e-19
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 1211 AAGACGTGATTTTGGTCTGTCATTAACAAAACTGTGTAATAGATTAAGAATGTGTTTTT 1269
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAGACATGATTTTGGTCTATCATTAACAAAACTGTGTAATAGATTAAGAATGTGTTTTT 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62399277435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5