BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483780
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46300.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1291 0.0
> AT2G46300.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr2:19008291-19009558
FORWARD LENGTH=1171
Length=1171
Score = 1291 bits (699), Expect = 0.0
Identities = 810/862 (94%), Gaps = 14/862 (2%)
Strand=Plus/Plus
Query 1 TTTTGATCTTCTTTGATACGATTTATCTGGAGATCGTCAGAGAGGTGTGAAGAATT---a 57
||||||||||| ||||||||||||||| ||||||||||||||| | ||||| |||| |
Sbjct 36 TTTTGATCTTCCTTGATACGATTTATCAGGAGATCGTCAGAGA-G-GTGAATAATTAAGA 93
Query 58 -aaaaaa-aTGGCAGATTATCAGATGAAACCC-GTTCTTCAAAAGCCACCAGGTTATAGA 114
|||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 94 GAAAAAAGATGGCAGATTATCAGATG-AACCCGGTTCTTCAAAAGCCACCAGGTTACAGA 152
Query 115 GATCCAAACATGTCGTctcctcctcctccccctcctcccATGTC-ACAACAACCTATGAG 173
|||||||||||||| |||||||||||||| || |||||||| || |||||||||||||||
Sbjct 153 GATCCAAACATGTCCTCTCCTCCTCCTCCTCCACCTCCCAT-TCAACAACAACCTATGAG 211
Query 174 AAAAGCCGTCCCTATGCCTACTTCTTACCGACCAAAGAAAAAACGCAGAAGCTGTTGTCG 233
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 212 AAAAGCCGTCCCTATGCCTACTTCTTACCGACCAAAGAAAAAACGTAGAAGCTGTTGTCG 271
Query 234 TTTTTGTTGCTGTTGCATCTGCATTACTCTTGTCCTCTTCATCTTCCTCCTCTTGGTCGG 293
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 272 TTTCTGTTGCTGTTGCATCTGCATTACTCTTGTTCTCTTCATCTTCCTCCTCTTGGTCGG 331
Query 294 AACAGCTGTTTTCTACCTCTGGTTCGATCCTAAGCTTCCTACTTTCAGCCTCGCTTCCTT 353
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 332 AACAGCTGTTTTCTACCTCTGGTTCGATCCTAAGCTTCCCACTTTCAGCCTCGCTTCCTT 391
Query 354 CCGTCTCGACGGATTCAAACTCGCCGACGATCCCGACGGCGCGTCTCTCTCCGCCACCGC 413
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 CCGTCTCGACGGCTTCAAACTCGCCGACGATCCCGACGGCGCGTCTCTCTCCGCCACCGC 451
Query 414 CGTTGCCCGCGTTGAGATGAAGAATCCCAACTCGAAACTCGTCTTTTACTACGGAAACAC 473
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 452 CGTTGCCCGCGTTGAGATGAAGAATCCGAACTCGAAACTCGTTTTTTACTACGGAAACAC 511
Query 474 CGCCGTGGAAATGAGCGTTGGTTCAGGAAACGACGAGACCGGGATGGGAGAGACGACGGT 533
||||| || ||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct 512 TGCCGTTGATTTGAGCGTTGGTTCGGGAAACGATGAGACCGGGATGGGAGAGACGACGAT 571
Query 534 GAATGGATTCCGACAAGGCCCCAAGAATTCGACGAGCGTGAAAGTGGAGACGACGGTGAA 593
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 572 GAATGGATTCCGACAAGGTCCCAAAAACTCGACGAGCGTGAAAGTGGAGACGACGGTGAA 631
Query 594 GAA-CGAGCTCGTGGAGAGAGGACTGGCTAAGAGACTCGCTGCGAAATTTCAAAGCAAAG 652
||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 632 GAATC-AGCTCGTGGAGAGAGGATTGGCTAAGAGACTCGCTGCGAAATTTCAGAGCAAAG 690
Query 653 ATTTGGTAATTAATGTTGTTGCAAAGACTAAAGTTGGATTAGGTGTCGGCGGAATTAAGA 712
||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 691 ATTTGGTCATTAACGTTGTTGCCAAGACTAAAGTTGGATTAGGTGTCGGCGGTATTAAGA 750
Query 713 TCGGAATGCTCGCCGTTAATTTGAGATGCGGTGGCGTTAGCTTGAACAAGCTTGATACTG 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TCGGAATGCTCGCCGTTAATTTGAGATGCGGTGGCGTTAGCTTGAACAAGCTTGATACTG 810
Query 773 ATTCACCTCAATGCACCCTCAATACACTCAAATGGTTAAATATACAGTAATGAGGACGGA 832
|||||||| |||||| |||||||||||||||||| ||| |||||||||| || |||||
Sbjct 811 ATTCACCTAAATGCATTCTCAATACACTCAAATGGGTAACTATACAGTAACAAG-ACGGA 869
Query 833 AGGATTTGAGGATTTGGAAAAA 854
|||||| |||||||||||||||
Sbjct 870 AGGATTCGAGGATTTGGAAAAA 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5