BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483781
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46310.1 | Symbols: CRF5 | cytokinin response factor 5 | chr... 1672 0.0
> AT2G46310.1 | Symbols: CRF5 | cytokinin response factor 5 | chr2:19011503-19012857
FORWARD LENGTH=1355
Length=1355
Score = 1672 bits (905), Expect = 0.0
Identities = 1128/1233 (91%), Gaps = 25/1233 (2%)
Strand=Plus/Plus
Query 1 AAAGAGAAATGAAAAGCCGAGTGAGAAAAGCTAAGTACACGGTTCACCGGAAAACCACCT 60
||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||| |
Sbjct 104 AAAGAGAAATGAAAAGCCGAGTGAGAAAATCCAAGTACACGGTTCACCGGAAAATCACAT 163
Query 61 CCGTTCCGTTCGACGGTTTCCCAAAGGTTGTGAAAATCATCGTCACTGACCCATGTGCTA 120
|| ||||||||||||||||| ||| |||| |||||||| |||||||||||||| ||||
Sbjct 164 CCACACCGTTCGACGGTTTCCCGAAGATTGTCAAAATCATAGTCACTGACCCATGCGCTA 223
Query 121 CTGATTCTTCCAGTGATGAGGAAAACGACAGCAAATCTGTTGCTCCGAGGGTGAAACGTT 180
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 224 CTGATTCTTCCAGCGATGAGGAAAACGACAACAAATCTGTTGCTCCGAGGGTGAAACGTT 283
Query 181 ATGTGGAAGAGATTAGGTTCGGTGAATACGACGATGAACCTAAACCGGCGAGGAAAGCGA 240
||||||| ||||| |||||| |||| | || || |||||||||||||||||||||||
Sbjct 284 ATGTGGATGAGATCAGGTTCTGTGACGAAGATGACGAACCTAAACCGGCGAGGAAAGC-- 341
Query 241 GGAATAAAACAG-CCACGGCGGCGGCGGTGGTGAACGGTGGTGATTTGGTGAAGCCTGTG 299
||| |||| || || ||||||| |||| || ||||||||| |||||||| ||| |||||
Sbjct 342 -GAAGAAAA-AGTCCCCGGCGGCTGCGGCGGAGAACGGTGGAGATTTGGTAAAGTCTGTG 399
Query 300 GTGAAGTATAGAGGAGTTAGACAACGACCTTGGGGAAAGTTCGCGGCGGAGATTCGTGAT 359
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 400 GTGAAGTATAGAGGAGTGAGACAACGACCTTGGGGAAAATTTGCGGCGGAGATTCGTGAT 459
Query 360 CCTTCGAGTCGTACTCGACTCTGGCTTGGAACTTTCGCCACGGCGGAGGAAGCTGCTATA 419
||||||||||||||| ||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 460 CCTTCGAGTCGTACTAGACTCTGGCTTGGGACTTTTGCGACGGCGGAGGAAGCTGCTATA 519
Query 420 GGTTACGACAGAGCCGCGATTCGACTCAAAGGACATAACGCTCAGACGAATTTCCTCACT 479
|||||||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 520 GGTTACGATAGAGCCGCGATTCGAATCAAAGGTCATAACGCTCAGACGAATTTTCTCACT 579
Query 480 CCTCCTCCTAGTCCGACGAGTGAGGTGTTGCCGGAAACACCGGTGATTGATCTTGAAACG 539
||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||
Sbjct 580 CCTCCTCCTAGTCCGACGACTGAGGTGTTACCGGAAACTCCGGTGATTGACCTTGAAACT 639
Query 540 GTCTCTGGTTGTGATTCGGCGAGGGACTCACAAATCAGCCTGTCTTCTCCGACTTCTGTT 599
|||||||||||||||||||||||||| || |||||||| |||| ||||||||||||||||
Sbjct 640 GTCTCTGGTTGTGATTCGGCGAGGGAATCGCAAATCAGTCTGTGTTCTCCGACTTCTGTT 699
Query 600 CTCCGGTTTAATCACATCGACGAAACAGAGTACAGAACAGAGCCAAAGGAAGAACAAACT 659
|||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 700 CTCCGGTTTAGTCACAACGACGAAACAGAGTACAGAACAGAGCCAACGGAAGAACAAAAT 759
Query 660 CCGTTTTTCTTGCCTGATTTATTTCGCGCCGGAGATTATTTTTGGGATTCCGAAATTACC 719
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 760 CCGTTTTTCTTGCCTGATTTGTTTCGCTCCGGAGATTATTTTTGGGATTCCGAAATTACC 819
Query 720 CCTGATCCTTTGTTTCTAGACGAAATCCACCAGTCGTTGTTA-CAAA-A-CAACAACAAG 776
||||| ||||||||||| |||||| |||||||||| |||||| |||| | |||||||||
Sbjct 820 CCTGACCCTTTGTTTCTCGACGAATTCCACCAGTCCTTGTTACCAAACATCAACAACAAC 879
Query 777 AACACTGTGTCTGATAAAGAAACGAATCTCTCTGAGAGTTTTCCGTTGGGAGTGATCGGA 836
||||| |||| |||||| || |||||||| ||||| ||||||||||||||||||||||||
Sbjct 880 AACACAGTGTGTGATAAGGATACGAATCTGTCTGATAGTTTTCCGTTGGGAGTGATCGGA 939
Query 837 GATTTCAGCTCATGGGACGTGGATGAGTTTTTCCAAGATCATTTGTTGGATAAGTAA-TA 895
||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
Sbjct 940 GATTTCAGCTCATGGGATGTTGATGAGTTTTTCCAAGATCATTTGTTGGATAAGTAATTT 999
Query 896 GATG-GTTCTTCCTCAGAAATTTTCTGGGTTTCtttttttttGGTTGTGTGAGTGAGATG 954
|||| |||||||| ||||| ||||||||||||| | |||||||||||||||||||||||
Sbjct 1000 GATGAGTTCTTCCCCAGAATTTTTCTGGGTTTC--TCTTTTTGGTTGTGTGAGTGAGATG 1057
Query 955 AGTGGTTTGATGACAACGAC-GGGATGAATCTTAGCCGTCCGTTTTCCCTTTCGTGGACG 1013
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1058 AGTGGTTTGATGACAACGACGGGGATGAATCTTAGCCGTCCGTTTTCCATTTCGTGGACG 1117
Query 1014 GCTCCGATCAGCGGAAGAAGCGCAACGGAGtttttttATTTATCTATTGGAGAATTTTTA 1073
|||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||
Sbjct 1118 GCTCCGATCAGCGGAAGAAGCGCAACGGAG--TTTTTATTTATCTGTTTGAGAA-TTTTA 1174
Query 1074 -AATTTAATTTGCGAGTAAATATAGTAATTAGTGTTAAGATTGTGAGAGTTTAAATTA-T 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1175 TAATTTAATTTGCGAGTAAATATAGTAATTAGTGTTAAGATTGTGAGAGTTTAAGTTAAT 1234
Query 1132 TAggg-ggg-ttttgaat-t-ggggattttgggaggtttttgttgtttggtttCTCTCCG 1187
||||| ||| |||||||| | ||||||||||||||||||||||| | |||||||||||
Sbjct 1235 TAGGGAGGGGTTTTGAATATTGGGGATTTTGGGAGGTTTTTGTT-T--GGTTTCTCTCCA 1291
Query 1188 AGTCTGTCACTATGCAAGGACGCAGTATATAGA 1220
|||||||||||||||||||| |||||||| |||
Sbjct 1292 AGTCTGTCACTATGCAAGGAAGCAGTATAAAGA 1324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59939450730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5