BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483782
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46320.1 | Symbols: | Mitochondrial substrate carrier famil... 1886 0.0
> AT2G46320.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr2:19015813-19018230 FORWARD LENGTH=1481
Length=1481
Score = 1886 bits (1021), Expect = 0.0
Identities = 1180/1254 (94%), Gaps = 21/1254 (2%)
Strand=Plus/Plus
Query 1 GAACACCAACCATTCGCAATCGTGCGACGTGAACATTGGAAGAATTC-GATT-GCTGAAG 58
||||||||||||| ||| ||||||||||||||| ||||| |||| || |||| |||||||
Sbjct 81 GAACACCAACCATACGCCATCGTGCGACGTGAAAATTGG-AGAA-TCTGATTGGCTGAAG 138
Query 59 GATTATTGAAATTGAAAGTTATTGTGATCGAGTTCT-AATTTTCCTGATGGTGGAAGAAG 117
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 139 GATTATTGAAATTGAAAGTTATTGTGATCGAGTTTTGTTTTTTCCTGATGGTGGAAGAAG 198
Query 118 CAAAATTGGATTCAAAATCGAAATCGATTCCGAATGAGAATTTGAGATTCGGAGAAAGGG 177
|| |||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 199 CACAATTGGATCCTAAATCGAAATCGATTCCGAATGAGAATTTGAAATTTGGAGAAAGGG 258
Query 178 CTTTGTCTGCCGGCGGCGCCGCTTTTTTATCGGCGGTCATAGTTAATCCCCTCGATGTTG 237
||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 259 CTTTGTCTGCCGGAGGCGCCGCTTTTATATCGGCGGTCATAGTCAATCCTCTCGATGTTG 318
Query 238 TTAAGACGAGATTACAAGCACAGGCTGCAGGAGTTCCGTATCAAGGCTCGTGTCGTCTTG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 TTAAGACGAGATTACAAGCACAGGCTGCAGGAGTTCCGTATCAAGGCTCGTGTCGTCTTG 378
Query 298 GTTGTTTCGATTCGAATTCCTCGGTGGTACATGGTTTGACAAGTAATTCTGCTCCAGGGA 357
|||||||||| |||||||| || ||||||||| ||||| ||||||||||||||||||||
Sbjct 379 GTTGTTTCGACACGAATTCCACGTTGGTACATGATTTGAGAAGTAATTCTGCTCCAGGGA 438
Query 358 TGTGTAGAATTACTGGCTCTGCATCTGTATGCTCAGATAATCAGTACAAGGGAACTCTTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TGTGTAGAATTACTGGCTCTGCATCTGTATGCTCAGATAATCAGTACAAGGGAACTCTTG 498
Query 418 ATGTCTTCTACAAAATTATCCGCCAGGAAGGGTTTTCTAGGCTTTGGAGAGGTACAAACG 477
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 ATGTTTTCTACAAAATTATCCGCCAGGAAGGGTTTTCTAGGCTTTGGAGAGGTACAAACG 558
Query 478 CAAGTTTAGCTTTGGCCGTTCCGACTGTTGGGATCTACATGCCTTGTTATGATTATTTTC 537
|||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 CAAGTTTAACTTTAGCCATTCCGACTGTTGGGATCTACATGCCTTGTTATGATTATTTTC 618
Query 538 GCAACATAATGGAGGAGTTCACGACAGAGAAGTCCCCAACTTTGACGATTTATGTCCCTC 597
||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||
Sbjct 619 GCAACATAATGGAGGAGTTCACGACTGAGAAGTCTCCATCTTTGACGGTTTATGTCCCTC 678
Query 598 TAGTTGCCGGGACAATAGCCCGCTCCTTGGCTTGTATCTCTTGTTACCCTGTTGAGTTAG 657
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 679 TAGTTGCTGGGACAATAGCACGCTCCTTGGCTTGTATCTCTTGTTACCCTGTTGAGTTAG 738
Query 658 CCAGGACACGGATGCAGGCCTTTAAGGGAACGCAGAGAGATGTGAAACTGCCTGGCGTCT 717
| ||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| |
Sbjct 739 CAAGGACACGGATGCAGGCATTTAAGGGAACGCAAAGAAATGTGAAACTGCCTGGCGTTT 798
Query 718 GGAAGACATTAGTTGACGTCGTCAATCCAGTCAAGGGCTCAAATAATGGATACAGGATGT 777
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 799 GGAAGACATTAGTTGACGTCGTCAATCCAGTGAAGGGCTCAAATAATGGATATAGGATGT 858
Query 778 TATGGACTGGTCTTGGTGCTCAGCTTGCTAGGGATGTTCCATTCTCTGCAATCTGCTGGT 837
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 859 TATGGACTGGTCTTGGTGCTCAACTTGCTAGGGATGTTCCATTCTCTGCAATCTGCTGGT 918
Query 838 CGATACTTGAGCCTACCCGGAGAAGCATTCACG-CGGCCATGGGTGAAGAACCAGGGGCA 896
||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct 919 CGATACTTGAGCCTACCCGGAGAAGCATTCA-GTCGGCCATGGGTGAAGAACCAAGGGCA 977
Query 897 GGCAGTATAATAGGTGCGAACTTCACTGCTGGTTTTGTTGCGGGTGCAGTTGCTGCTGCA 956
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 978 GGCAGTATAATAGGTGCAAACTTCGCTGCTGGTTTTGTTGCGGGTGCAGTTGCTGCAGCA 1037
Query 957 GCTACTTGCCCACTAGATGTTGCAAAGACTAGGCGTCAAATAGAGAAGAATACAGATAGA 1016
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1038 GCTACTTGCCCTCTAGATGTTGCAAAGACTAGGCGTCAAATAGAGAAGAACACAGATAGA 1097
Query 1017 GCCATGACAATGACCACAAGACAAACCTTAGCAGAGATTTGGAGGGACGGAGGAATAAGA 1076
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 1098 GCCATGACAATGACCACAAGACAAACCTTGGCAGAGATTTGGAGGGACGGAGGGATGAGA 1157
Query 1077 GGGATGTTTAGTGGAGCAGGGGCTCGGGTGGGACGAGCAGGACCATCTGTAGCCATTGTG 1136
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1158 GGGATGTTTAGTGGAGCAGGGGCTAGAGTGGGACGAGCAGGACCATCTGTAGCCATTGTG 1217
Query 1137 GTATCCTTTTACGAAGTGGTCAAGTACGGACTGCACAATTTTCACCAACAGTAAGTCAGT 1196
||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||
Sbjct 1218 GTATCGTTTTACGAAGTGGTCAAGTACGGACTGCACAACTTCCACCAACAGTAA--CA-- 1273
Query 1197 AACACTTATAGTTACTGTAGACAGATTTTGTTTTGATGCGAAGCTAAAAAGAAC 1250
| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1274 --C--TTATA----CT--AGACAGATTTTGTTTTGATGCGAAGCTAAAAAGAAC 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5