BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483786
Length=480
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46330.1 | Symbols: AGP16, ATAGP16 | arabinogalactan protein... 617 2e-176
> AT2G46330.1 | Symbols: AGP16, ATAGP16 | arabinogalactan protein
16 | chr2:19018509-19019255 REVERSE LENGTH=590
Length=590
Score = 617 bits (334), Expect = 2e-176
Identities = 413/446 (93%), Gaps = 25/446 (6%)
Strand=Plus/Plus
Query 1 CTCCTCCGTCGTCTCTGCAGAATCACTCTCTCGCCGGAGTTTTTCACCTGCAGAGCTCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 CTCCTCCGTCGTCTCTGCAGAATCACTCTCTCGCCGGAGTTTTTCACCTGCAGAGCTCTC 98
Query 61 GA-TTTTTCTCTCGAGCATCATCATTTTC-TACGGATCAATCACCAACGGATAGAGAGAT 118
|| |||||||||||||||||||||||||| | ||||||||||| | | | ||||||
Sbjct 99 GATTTTTTCTCTCGAGCATCATCATTTTCGT-CGGATCAATCA-C--C----A-AGAGAT 149
Query 119 GGCGTCGAGAAACTCCGTCACCGGATTCGCGTTGTTCAGTTTTGTATTCGCCGTCATCTT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 GGCGTCGAGAAACTCCGTCACCGGATTCGCGTTGTTCAGTTTTGTATTCGCCGTCATCTT 209
Query 179 ATCTCTCGCCGGCGCTCAATCCCTAGCTCCAGCTCCTGCTCCAACCAGCGATGGAACATC 238
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 210 ATCTCTCGCCGGCGCTCAATCCCTGGCTCCAGCTCCTGCTCCCACCAGCGATGGAACATC 269
Query 239 GATAGATCAAGGGATAGCGTACTTGCTAATGGTGGTGGCGTTAGTGCTGACTTACCTAAT 298
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 270 GATAGATCAAGGGATAGCGTATTTGCTAATGGTGGTGGCGTTAGTGCTGACTTACCTAAT 329
Query 299 TCATCctcttgatgcttcttcttcctactctttcttctaatctctctctctttctttcAT 358
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 330 TCATCCTCTTGATGCTTCTTCTTCCTACTCCTTCTTCTAATCTCTCTCTCT--CTTTCTT 387
Query 359 CAGttttttttt-ttt-tttGCAACTTGTTCTTAGTTTC---AATTTGCCTTTT--CT-C 410
| |||||||||| ||| |||||||||| || |||||||| |||||||||||| || |
Sbjct 388 CTGTTTTTTTTTATTTCTTTGCAACTTCTTATTAGTTTCTTCAATTTGCCTTTTTTCTTC 447
Query 411 TT---GTGGATAAAATTTTCA-GAGT 432
|| |||||||||||||||| ||||
Sbjct 448 TTCTTGTGGATAAAATTTTCAAGAGT 473
Score = 54.7 bits (29), Expect = 8e-07
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 432 TCTCGATTATGATTTCTGGAGATTGATTG 460
|||||||||||||||||||||||||||||
Sbjct 491 TCTCGATTATGATTTCTGGAGATTGATTG 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22856536885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5